Wall clock time and date at job start Wed Apr 1 2020 03:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36253 * 126.29939 * 2 1 4 4 N 1.30130 * 110.05330 * 180.02562 * 3 2 1 5 5 C 1.35703 * 109.49816 * 0.02562 * 4 3 2 6 6 C 1.39480 * 134.43052 * 179.97438 * 5 4 3 7 7 N 1.31767 * 120.63053 * 179.74830 * 6 5 4 8 8 C 1.31950 * 122.59869 * 0.52965 * 7 6 5 9 9 C 1.39375 * 121.01604 * 359.47113 * 8 7 6 10 10 C 1.47535 * 120.75004 * 180.27672 * 9 8 7 11 11 O 1.21597 * 119.99753 * 138.92250 * 10 9 8 12 12 N 1.34775 * 120.00033 * 318.91804 * 10 9 8 13 13 C 1.46507 * 119.99717 * 184.24968 * 12 10 9 14 14 C 1.52995 * 112.94491 * 295.82715 * 13 12 10 15 15 C 1.53002 * 109.47291 * 299.24844 * 14 13 12 16 16 O 1.42897 * 109.47717 * 184.84796 * 15 14 13 17 17 C 1.53944 * 113.73817 * 164.23462 * 13 12 10 18 18 N 1.47818 * 86.03902 * 222.08389 * 17 13 12 19 19 C 1.36934 * 134.46093 * 204.64909 * 18 17 13 20 20 H 1.07999 * 119.99714 * 184.58176 * 19 18 17 21 21 C 1.38811 * 119.99690 * 4.57613 * 19 18 17 22 22 N 1.31617 * 120.00235 * 5.40762 * 21 19 18 23 23 Si 1.86804 * 119.99813 * 185.40468 * 21 19 18 24 24 H 1.48495 * 109.46979 * 94.99130 * 23 21 19 25 25 H 1.48496 * 109.47086 * 214.99454 * 23 21 19 26 26 H 1.48500 * 109.47036 * 334.99261 * 23 21 19 27 27 C 1.47582 * 91.04467 * 24.54828 * 18 17 13 28 28 C 1.36920 * 126.30052 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46983 * 263.38902 * 1 2 3 30 30 H 1.09006 * 109.47260 * 23.38667 * 1 2 3 31 31 H 1.09000 * 109.47346 * 143.38699 * 1 2 3 32 32 H 1.08003 * 124.97682 * 0.04874 * 3 2 1 33 33 H 1.07995 * 119.68165 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.49078 * 179.74228 * 8 7 6 35 35 H 0.96997 * 120.00252 * 4.25610 * 12 10 9 36 36 H 1.08999 * 109.47568 * 59.25127 * 14 13 12 37 37 H 1.09000 * 109.47274 * 179.25369 * 14 13 12 38 38 H 1.09005 * 109.47111 * 304.85088 * 15 14 13 39 39 H 1.09001 * 109.47106 * 64.84477 * 15 14 13 40 40 H 0.96694 * 114.00487 * 180.02562 * 16 15 14 41 41 H 1.09000 * 113.77254 * 336.34838 * 17 13 12 42 42 H 1.09003 * 113.77301 * 107.74654 * 17 13 12 43 43 H 0.97000 * 120.00019 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.77129 * 221.15080 * 27 18 17 45 45 H 1.09006 * 113.77063 * 89.75518 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.0981 0.0000 4 7 3.5210 0.7341 -0.0005 5 6 3.5980 -0.6208 -0.0015 6 6 4.6478 -1.5391 -0.0028 7 7 4.4066 -2.8345 0.0014 8 6 3.1836 -3.3299 -0.0032 9 6 2.0695 -2.4925 -0.0019 10 6 0.7047 -3.0528 -0.0009 11 8 -0.1586 -2.5495 0.6919 12 7 0.4147 -4.1223 -0.7681 13 6 -0.9608 -4.6215 -0.8391 14 6 -1.4733 -5.1504 0.5020 15 6 -0.5945 -6.3160 0.9601 16 8 -1.1385 -6.8825 2.1538 17 6 -1.2132 -5.5769 -2.0195 18 7 -2.4898 -4.8535 -2.1989 19 6 -3.7012 -5.1690 -2.7537 20 1 -4.4739 -4.4179 -2.8264 21 6 -3.9361 -6.4542 -3.2227 22 7 -3.0360 -7.3967 -3.0388 23 14 -5.5298 -6.8461 -4.1149 24 1 -5.3179 -6.7313 -5.5802 25 1 -5.9556 -8.2294 -3.7832 26 1 -6.5829 -5.8889 -3.6906 27 6 -1.9353 -3.6561 -1.5378 28 6 2.2756 -1.1035 -0.0005 29 1 -0.3633 -0.1183 1.0209 30 1 -0.3634 0.9433 -0.4079 31 1 -0.3634 -0.8249 -0.6129 32 1 1.9250 2.1210 0.0008 33 1 5.6680 -1.1850 -0.0029 34 1 3.0438 -4.4008 -0.0035 35 1 1.1168 -4.5616 -1.2731 36 1 -1.4364 -4.3536 1.2449 37 1 -2.5016 -5.4936 0.3882 38 1 -0.5626 -7.0758 0.1791 39 1 0.4149 -5.9546 1.1567 40 1 -0.6310 -7.6281 2.5022 41 1 -0.5150 -5.4476 -2.8465 42 1 -1.3353 -6.6187 -1.7232 43 1 -3.2003 -8.2948 -3.3662 44 1 -2.6326 -3.1671 -0.8576 45 1 -1.4495 -2.9612 -2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717504526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:12 Heat of formation + Delta-G solvation = 67.082093 kcal Electronic energy + Delta-G solvation = -30959.491311 eV Core-core repulsion = 26787.324563 eV Total energy + Delta-G solvation = -4172.166747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.69188 -40.17628 -38.76348 -37.85542 -36.36964 -34.41392 -33.83412 -32.35877 -31.52379 -30.43030 -30.02302 -27.45308 -27.11626 -25.21371 -24.97740 -23.44669 -23.18430 -22.27517 -21.44231 -20.16313 -18.81561 -18.06945 -17.74754 -17.32917 -17.04025 -16.90125 -16.26660 -15.71607 -15.52827 -15.07644 -14.85195 -14.82251 -14.52911 -14.25286 -13.93379 -13.79231 -13.77085 -13.59702 -12.89728 -12.66922 -12.65937 -12.49919 -11.95787 -11.76383 -11.66783 -11.18697 -10.99165 -10.85768 -10.80650 -10.76642 -10.62637 -10.43763 -10.16226 -9.96205 -9.73654 -9.61376 -9.24568 -9.17804 -8.99057 -8.77308 -8.53945 -7.01447 -5.87828 -3.21958 0.25351 1.15469 2.26719 2.31332 2.82712 3.20539 3.34053 3.39752 3.41174 3.63650 3.83665 4.11293 4.22352 4.37771 4.44620 4.50296 4.67154 4.74203 4.87087 5.07929 5.08148 5.14744 5.21535 5.38834 5.40232 5.49950 5.53910 5.71510 5.72030 5.85315 5.89860 6.02146 6.18622 6.21285 6.31778 6.34671 6.48307 6.68813 6.71003 6.75693 7.02112 7.19303 7.36425 7.40115 7.62640 7.71471 7.86433 7.90730 8.27010 8.92215 9.59323 10.43625 11.28152 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.003118 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.001239 B = 8978.970191 C = 9744.894523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.475 5.475 3 C 0.261 3.739 4 N -0.480 5.480 5 C -0.016 4.016 6 C 0.191 3.809 7 N -0.488 5.488 8 C 0.130 3.870 9 C -0.166 4.166 10 C 0.561 3.439 11 O -0.531 6.531 12 N -0.704 5.704 13 C 0.125 3.875 14 C -0.095 4.095 15 C 0.083 3.917 16 O -0.574 6.574 17 C 0.157 3.843 18 N -0.601 5.601 19 C -0.224 4.224 20 H 0.082 0.918 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.126 3.874 28 C 0.119 3.881 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.220 0.780 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.399 0.601 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.372 0.628 41 H 0.029 0.971 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.052 0.948 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 11.202 6.719 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.162 5.162 3 C -0.025 4.025 4 N -0.200 5.200 5 C -0.137 4.137 6 C 0.024 3.976 7 N -0.197 5.197 8 C -0.022 4.022 9 C -0.174 4.174 10 C 0.346 3.654 11 O -0.409 6.409 12 N -0.354 5.354 13 C 0.039 3.961 14 C -0.134 4.134 15 C 0.005 3.995 16 O -0.379 6.379 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.351 4.351 20 H 0.100 0.900 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.001 4.001 28 C -0.001 4.001 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.236 0.764 33 H 0.185 0.815 34 H 0.184 0.816 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.218 0.782 41 H 0.047 0.953 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.740 11.708 6.947 18.645 hybrid contribution -1.482 -0.688 -0.860 1.846 sum 11.258 11.020 6.088 16.889 Atomic orbital electron populations 1.22287 0.74104 1.04328 1.05343 1.45258 1.08530 1.04892 1.57549 1.25595 0.84976 0.93613 0.98287 1.70474 1.18328 1.09927 1.21222 1.20143 0.92817 0.91600 1.09101 1.22262 0.98134 0.86266 0.90891 1.67682 1.23290 1.13849 1.14889 1.22742 0.85898 0.99811 0.93729 1.20030 0.96062 0.90312 1.11019 1.17949 0.86669 0.80673 0.80076 1.90768 1.48455 1.60621 1.41057 1.46233 1.11768 1.30382 1.47062 1.23064 0.78933 0.97781 0.96304 1.21333 1.00803 0.96600 0.94629 1.22121 0.95380 0.95770 0.86223 1.86489 1.56067 1.51888 1.43412 1.22741 0.86569 0.97631 0.89975 1.45598 1.08418 1.09972 1.68771 1.18978 0.88369 0.95143 1.32597 0.90038 1.24768 0.98418 0.95479 1.01407 1.69773 1.34725 1.01810 1.50119 0.86077 0.82493 0.77604 0.79460 1.21624 1.21575 1.20480 1.22807 0.93089 0.91183 0.92973 1.18659 0.91565 0.88649 1.01267 0.89325 0.89635 0.88881 0.76361 0.81456 0.81578 0.76667 0.90565 0.89049 0.93013 0.94868 0.78195 0.95334 0.89000 0.93515 0.93025 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.43 59.85 0.56 1.35 16 2 N -0.48 -5.28 3.18 -122.87 -0.39 -5.67 16 3 C 0.26 2.44 12.50 -89.57 -1.12 1.32 16 4 N -0.48 -5.70 11.28 -12.01 -0.14 -5.84 16 5 C -0.02 -0.20 7.27 -84.74 -0.62 -0.81 16 6 C 0.19 2.13 11.25 -17.12 -0.19 1.94 16 7 N -0.49 -5.72 10.30 -12.64 -0.13 -5.85 16 8 C 0.13 1.47 10.52 -17.08 -0.18 1.29 16 9 C -0.17 -2.14 5.77 -104.86 -0.60 -2.74 16 10 C 0.56 8.03 6.36 -12.47 -0.08 7.95 16 11 O -0.53 -8.77 11.87 5.28 0.06 -8.70 16 12 N -0.70 -9.86 4.82 -50.10 -0.24 -10.10 16 13 C 0.13 2.21 0.66 -134.02 -0.09 2.12 16 14 C -0.10 -1.75 4.85 -26.73 -0.13 -1.88 16 15 C 0.08 1.31 6.82 37.16 0.25 1.57 16 16 O -0.57 -9.17 13.66 -35.23 -0.48 -9.65 16 17 C 0.16 3.34 6.82 -2.84 -0.02 3.32 16 18 N -0.60 -14.56 3.54 -177.47 -0.63 -15.19 16 19 C -0.22 -6.02 10.69 -15.06 -0.16 -6.18 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 22 N -0.92 -25.73 11.29 55.49 0.63 -25.11 16 23 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.13 2.53 7.80 -2.97 -0.02 2.51 16 28 C 0.12 1.55 6.77 -83.82 -0.57 0.99 16 29 H 0.09 0.93 7.80 -51.93 -0.40 0.52 16 30 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.09 1.14 6.28 -51.93 -0.33 0.81 16 32 H 0.22 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.17 1.47 7.84 -52.49 -0.41 1.06 16 35 H 0.40 4.65 8.12 -40.82 -0.33 4.32 16 36 H 0.08 1.45 6.61 -51.93 -0.34 1.11 16 37 H 0.09 1.99 8.02 -51.93 -0.42 1.58 16 38 H 0.05 0.85 7.02 -51.93 -0.36 0.48 16 39 H 0.03 0.46 7.95 -51.93 -0.41 0.05 16 40 H 0.37 3.98 9.12 45.56 0.42 4.39 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.17 5.85 -51.93 -0.30 1.87 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -34.42 373.23 -8.76 -43.17 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.98 Total: 8.28 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -3.06 Total: 12.55 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.90 Total: -67.76 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.42 Total: -18.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.42 -8.76 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.256 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds