Wall clock time and date at job start Wed Apr 1 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36253 * 126.29939 * 2 1 4 4 N 1.30130 * 110.05330 * 180.02562 * 3 2 1 5 5 C 1.35703 * 109.49816 * 0.02562 * 4 3 2 6 6 C 1.39480 * 134.43052 * 179.97438 * 5 4 3 7 7 N 1.31767 * 120.63053 * 179.74830 * 6 5 4 8 8 C 1.31950 * 122.59869 * 0.52965 * 7 6 5 9 9 C 1.39375 * 121.01604 * 359.47113 * 8 7 6 10 10 C 1.47535 * 120.75004 * 180.27672 * 9 8 7 11 11 O 1.21597 * 119.99753 * 138.92250 * 10 9 8 12 12 N 1.34775 * 120.00033 * 318.91804 * 10 9 8 13 13 C 1.46507 * 119.99717 * 184.24968 * 12 10 9 14 14 C 1.52995 * 112.94491 * 295.82715 * 13 12 10 15 15 C 1.53002 * 109.47291 * 299.24844 * 14 13 12 16 16 O 1.42897 * 109.47717 * 184.84796 * 15 14 13 17 17 C 1.53944 * 113.73817 * 164.23462 * 13 12 10 18 18 N 1.47818 * 86.03902 * 222.08389 * 17 13 12 19 19 C 1.36934 * 134.46093 * 204.64909 * 18 17 13 20 20 H 1.07999 * 119.99714 * 184.58176 * 19 18 17 21 21 C 1.38811 * 119.99690 * 4.57613 * 19 18 17 22 22 N 1.31617 * 120.00235 * 5.40762 * 21 19 18 23 23 Si 1.86804 * 119.99813 * 185.40468 * 21 19 18 24 24 H 1.48495 * 109.46979 * 94.99130 * 23 21 19 25 25 H 1.48496 * 109.47086 * 214.99454 * 23 21 19 26 26 H 1.48500 * 109.47036 * 334.99261 * 23 21 19 27 27 C 1.47582 * 91.04467 * 24.54828 * 18 17 13 28 28 C 1.36920 * 126.30052 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46983 * 263.38902 * 1 2 3 30 30 H 1.09006 * 109.47260 * 23.38667 * 1 2 3 31 31 H 1.09000 * 109.47346 * 143.38699 * 1 2 3 32 32 H 1.08003 * 124.97682 * 0.04874 * 3 2 1 33 33 H 1.07995 * 119.68165 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.49078 * 179.74228 * 8 7 6 35 35 H 0.96997 * 120.00252 * 4.25610 * 12 10 9 36 36 H 1.08999 * 109.47568 * 59.25127 * 14 13 12 37 37 H 1.09000 * 109.47274 * 179.25369 * 14 13 12 38 38 H 1.09005 * 109.47111 * 304.85088 * 15 14 13 39 39 H 1.09001 * 109.47106 * 64.84477 * 15 14 13 40 40 H 0.96694 * 114.00487 * 180.02562 * 16 15 14 41 41 H 1.09000 * 113.77254 * 336.34838 * 17 13 12 42 42 H 1.09003 * 113.77301 * 107.74654 * 17 13 12 43 43 H 0.97000 * 120.00019 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.77129 * 221.15080 * 27 18 17 45 45 H 1.09006 * 113.77063 * 89.75518 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.0981 0.0000 4 7 3.5210 0.7341 -0.0005 5 6 3.5980 -0.6208 -0.0015 6 6 4.6478 -1.5391 -0.0028 7 7 4.4066 -2.8345 0.0014 8 6 3.1836 -3.3299 -0.0032 9 6 2.0695 -2.4925 -0.0019 10 6 0.7047 -3.0528 -0.0009 11 8 -0.1586 -2.5495 0.6919 12 7 0.4147 -4.1223 -0.7681 13 6 -0.9608 -4.6215 -0.8391 14 6 -1.4733 -5.1504 0.5020 15 6 -0.5945 -6.3160 0.9601 16 8 -1.1385 -6.8825 2.1538 17 6 -1.2132 -5.5769 -2.0195 18 7 -2.4898 -4.8535 -2.1989 19 6 -3.7012 -5.1690 -2.7537 20 1 -4.4739 -4.4179 -2.8264 21 6 -3.9361 -6.4542 -3.2227 22 7 -3.0360 -7.3967 -3.0388 23 14 -5.5298 -6.8461 -4.1149 24 1 -5.3179 -6.7313 -5.5802 25 1 -5.9556 -8.2294 -3.7832 26 1 -6.5829 -5.8889 -3.6906 27 6 -1.9353 -3.6561 -1.5378 28 6 2.2756 -1.1035 -0.0005 29 1 -0.3633 -0.1183 1.0209 30 1 -0.3634 0.9433 -0.4079 31 1 -0.3634 -0.8249 -0.6129 32 1 1.9250 2.1210 0.0008 33 1 5.6680 -1.1850 -0.0029 34 1 3.0438 -4.4008 -0.0035 35 1 1.1168 -4.5616 -1.2731 36 1 -1.4364 -4.3536 1.2449 37 1 -2.5016 -5.4936 0.3882 38 1 -0.5626 -7.0758 0.1791 39 1 0.4149 -5.9546 1.1567 40 1 -0.6310 -7.6281 2.5022 41 1 -0.5150 -5.4476 -2.8465 42 1 -1.3353 -6.6187 -1.7232 43 1 -3.2003 -8.2948 -3.3662 44 1 -2.6326 -3.1671 -0.8576 45 1 -1.4495 -2.9612 -2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717504526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:11 Heat of formation + Delta-G solvation = 40.949224 kcal Electronic energy + Delta-G solvation = -30960.624517 eV Core-core repulsion = 26787.324563 eV Total energy + Delta-G solvation = -4173.299953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.52791 -41.52572 -39.80025 -39.12074 -37.68498 -35.36891 -35.21033 -33.95702 -32.75374 -31.75891 -30.96543 -29.01188 -28.19631 -26.90242 -26.03129 -24.88961 -24.05553 -23.48404 -22.87140 -21.24916 -20.23814 -19.03018 -18.79332 -18.67981 -18.32705 -18.22808 -17.21914 -17.09269 -16.77039 -16.49189 -16.09226 -16.01036 -15.67972 -15.54509 -15.28360 -14.98639 -14.83421 -14.65335 -14.41597 -13.83891 -13.65570 -13.52312 -13.33426 -13.26699 -13.18410 -12.85912 -12.81775 -12.57348 -12.27742 -12.07770 -11.80345 -11.65120 -11.61076 -11.39786 -11.25752 -10.94623 -10.83548 -10.46221 -10.16216 -10.02415 -9.42311 -8.96026 -7.92760 -5.27512 -0.61523 0.25799 1.38916 1.46305 1.46821 1.53553 1.55756 1.78927 2.01050 2.47296 2.73949 3.05428 3.11891 3.23027 3.27910 3.37855 3.46117 3.60493 3.70998 3.80548 3.95468 4.08450 4.15122 4.26282 4.33347 4.36286 4.37438 4.47190 4.59639 4.65041 4.68906 4.74778 4.82360 4.97736 4.99687 5.13041 5.16205 5.19003 5.23941 5.36079 5.48034 5.65421 5.90240 5.96718 6.48040 6.55546 6.85324 6.88667 6.91314 7.12293 7.56474 8.48323 9.22261 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.003118 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.001239 B = 8978.970191 C = 9744.894523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.481 5.481 3 C 0.275 3.725 4 N -0.505 5.505 5 C -0.030 4.030 6 C 0.193 3.807 7 N -0.497 5.497 8 C 0.136 3.864 9 C -0.181 4.181 10 C 0.569 3.431 11 O -0.554 6.554 12 N -0.695 5.695 13 C 0.159 3.841 14 C -0.088 4.088 15 C 0.090 3.910 16 O -0.593 6.593 17 C 0.160 3.840 18 N -0.629 5.629 19 C -0.237 4.237 20 H 0.080 0.920 21 C -0.055 4.055 22 N -0.942 5.942 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.271 1.271 27 C 0.127 3.873 28 C 0.096 3.904 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.267 0.733 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.034 0.966 42 H 0.068 0.932 43 H 0.251 0.749 44 H 0.045 0.955 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.160 12.518 6.900 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.168 5.168 3 C -0.011 4.011 4 N -0.224 5.224 5 C -0.151 4.151 6 C 0.027 3.973 7 N -0.207 5.207 8 C -0.015 4.015 9 C -0.190 4.190 10 C 0.355 3.645 11 O -0.432 6.432 12 N -0.347 5.347 13 C 0.072 3.928 14 C -0.127 4.127 15 C 0.013 3.987 16 O -0.402 6.402 17 C 0.034 3.966 18 N -0.356 5.356 19 C -0.365 4.365 20 H 0.098 0.902 21 C -0.249 4.249 22 N -0.590 5.590 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.196 1.196 27 C 0.001 3.999 28 C -0.025 4.025 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.282 0.718 33 H 0.209 0.791 34 H 0.207 0.793 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.034 13.040 7.142 20.445 hybrid contribution -1.820 -0.985 -0.859 2.241 sum 12.214 12.055 6.283 18.275 Atomic orbital electron populations 1.22266 0.73574 1.05324 1.04427 1.45475 1.08936 1.04917 1.57503 1.26565 0.84084 0.94839 0.95585 1.70486 1.19704 1.09510 1.22682 1.20411 0.92909 0.92230 1.09560 1.22708 0.99101 0.86033 0.89432 1.67780 1.23236 1.14149 1.15502 1.23116 0.85412 1.00751 0.92249 1.19886 0.95187 0.90658 1.13233 1.18102 0.87151 0.79973 0.79226 1.90765 1.49420 1.61100 1.41960 1.45926 1.10423 1.30706 1.47607 1.22278 0.80434 0.95483 0.94630 1.21191 0.99218 0.97487 0.94778 1.21983 0.95811 0.94640 0.86264 1.86429 1.57270 1.53233 1.43220 1.22631 0.85700 0.96844 0.91383 1.45868 1.08694 1.12026 1.68999 1.19279 0.89662 0.95325 1.32270 0.90243 1.25510 1.01433 0.95451 1.02549 1.69929 1.36221 1.01759 1.51100 0.85120 0.79349 0.77042 0.78169 1.21403 1.21955 1.19575 1.22882 0.93413 0.90695 0.92876 1.18974 0.92470 0.89227 1.01797 0.90326 0.85756 0.91566 0.71791 0.79068 0.79309 0.74940 0.91146 0.93091 0.93583 0.92120 0.75451 0.94810 0.91409 0.94023 0.93720 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 9.43 127.77 1.21 2.75 16 2 N -0.48 -9.86 3.18 -542.64 -1.73 -11.59 16 3 C 0.27 4.40 12.50 179.98 2.25 6.64 16 4 N -0.50 -10.95 11.28 -191.90 -2.17 -13.12 16 5 C -0.03 -0.72 7.27 39.46 0.29 -0.43 16 6 C 0.19 3.97 11.25 85.00 0.96 4.92 16 7 N -0.50 -10.73 10.30 -193.92 -2.00 -12.73 16 8 C 0.14 2.84 10.52 84.95 0.89 3.74 16 9 C -0.18 -4.45 5.77 -20.02 -0.12 -4.56 16 10 C 0.57 15.77 6.36 86.70 0.55 16.32 16 11 O -0.55 -18.08 11.87 -4.02 -0.05 -18.13 16 12 N -0.69 -18.78 4.82 -430.67 -2.07 -20.86 16 13 C 0.16 5.63 0.66 5.35 0.00 5.63 16 14 C -0.09 -3.29 4.85 30.59 0.15 -3.14 16 15 C 0.09 2.82 6.82 71.98 0.49 3.31 16 16 O -0.59 -18.46 13.66 -148.98 -2.03 -20.49 16 17 C 0.16 6.91 6.82 86.44 0.59 7.50 16 18 N -0.63 -31.11 3.54 -715.40 -2.53 -33.65 16 19 C -0.24 -13.02 10.69 84.03 0.90 -12.13 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 22 N -0.94 -53.91 11.29 21.65 0.24 -53.67 16 23 Si 0.97 44.73 29.56 68.60 2.03 46.75 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.13 5.18 7.80 86.48 0.67 5.85 16 28 C 0.10 2.39 6.77 39.50 0.27 2.66 16 29 H 0.08 1.59 7.80 -2.39 -0.02 1.57 16 30 H 0.12 1.22 8.13 -2.38 -0.02 1.20 16 31 H 0.07 1.59 6.28 -2.39 -0.01 1.57 16 32 H 0.27 1.22 8.06 -2.91 -0.02 1.19 16 33 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.19 2.86 7.84 -2.91 -0.02 2.84 16 35 H 0.41 8.98 8.12 -92.71 -0.75 8.23 16 36 H 0.07 2.71 6.61 -2.39 -0.02 2.70 16 37 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 38 H 0.05 1.49 7.02 -2.38 -0.02 1.48 16 39 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 40 H 0.40 7.84 9.12 -74.06 -0.68 7.17 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 3.29 5.85 -2.39 -0.01 3.27 16 43 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -76.01 373.23 -1.10 -77.11 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.37 Total: 23.87 kcal Atomic # 6 Polarization: 26.93 SS G_CDS: 9.57 Total: 36.50 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -10.25 Total: -145.61 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -2.08 Total: -38.63 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.01 -1.10 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.062 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds