Wall clock time and date at job start Wed Apr 1 2020 03:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36252 * 126.29615 * 2 1 4 4 N 1.30133 * 110.05388 * 180.02562 * 3 2 1 5 5 C 1.35711 * 109.49387 * 359.75936 * 4 3 2 6 6 C 1.39470 * 134.42950 * 179.97438 * 5 4 3 7 7 N 1.31773 * 120.63583 * 180.02562 * 6 5 4 8 8 C 1.31941 * 122.59617 * 0.02562 * 7 6 5 9 9 C 1.39383 * 121.01891 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.75469 * 180.02562 * 9 8 7 11 11 O 1.21587 * 119.99577 * 143.05442 * 10 9 8 12 12 N 1.34776 * 119.99853 * 323.05967 * 10 9 8 13 13 C 1.46503 * 119.99530 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46903 * 179.97438 * 13 12 10 15 15 O 1.42903 * 110.64265 * 66.68918 * 14 13 12 16 16 C 1.55157 * 110.72200 * 190.02229 * 14 13 12 17 17 C 1.54908 * 101.58365 * 153.86725 * 16 14 13 18 18 N 1.47424 * 104.82929 * 322.98769 * 17 16 14 19 19 C 1.36943 * 125.64675 * 204.16247 * 18 17 16 20 20 H 1.08004 * 119.99363 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00161 * 359.96659 * 19 18 17 22 22 N 1.31613 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99893 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47455 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47351 * 119.99864 * 23 21 19 26 26 H 1.48501 * 109.46967 * 239.99526 * 23 21 19 27 27 C 1.47026 * 108.70502 * 24.13346 * 18 17 16 28 28 C 1.36917 * 126.29871 * 179.55483 * 2 1 3 29 29 H 1.08996 * 109.46987 * 264.48610 * 1 2 3 30 30 H 1.08998 * 109.46651 * 24.49297 * 1 2 3 31 31 H 1.09003 * 109.46557 * 144.48958 * 1 2 3 32 32 H 1.07998 * 124.97534 * 359.77711 * 3 2 1 33 33 H 1.08004 * 119.68725 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.49670 * 180.02562 * 8 7 6 35 35 H 0.96990 * 120.00349 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47032 * 299.99754 * 13 12 10 37 37 H 1.08994 * 109.47219 * 59.99849 * 13 12 10 38 38 H 0.96704 * 113.99565 * 300.69686 * 15 14 13 39 39 H 1.09003 * 111.00275 * 271.93983 * 16 14 13 40 40 H 1.09002 * 111.00535 * 35.79012 * 16 14 13 41 41 H 1.08996 * 110.36355 * 204.15462 * 17 16 14 42 42 H 1.08996 * 110.36668 * 81.82956 * 17 16 14 43 43 H 0.97008 * 120.00059 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.88224 * 239.52150 * 27 18 17 45 45 H 1.09001 * 109.88286 * 118.35210 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7342 -0.0005 5 6 3.5980 -0.6207 0.0044 6 6 4.6478 -1.5390 0.0058 7 7 4.4067 -2.8345 0.0107 8 6 3.1838 -3.3299 0.0140 9 6 2.0696 -2.4925 0.0130 10 6 0.7048 -3.0528 0.0172 11 8 -0.1761 -2.5028 0.6497 12 7 0.4345 -4.1741 -0.6799 13 6 -0.9210 -4.7301 -0.6761 14 6 -0.9565 -5.9930 -1.5389 15 8 -0.1717 -7.0300 -0.9467 16 6 -2.4178 -6.4646 -1.7619 17 6 -2.2969 -7.2277 -3.1046 18 7 -1.3239 -6.4507 -3.8939 19 6 -1.2322 -6.4393 -5.2602 20 1 -0.4816 -5.8335 -5.7459 21 6 -2.1038 -7.2066 -6.0208 22 7 -3.0181 -7.9454 -5.4288 23 14 -1.9791 -7.1904 -7.8845 24 1 -0.8774 -6.2852 -8.2991 25 1 -1.7018 -8.5647 -8.3740 26 1 -3.2594 -6.7082 -8.4621 27 6 -0.4689 -5.6896 -2.9713 28 6 2.2756 -1.1034 0.0086 29 1 -0.3633 -0.0987 1.0229 30 1 -0.3632 0.9352 -0.4261 31 1 -0.3632 -0.8366 -0.5970 32 1 1.9249 2.1209 -0.0034 33 1 5.6681 -1.1850 0.0029 34 1 3.0439 -4.4007 0.0184 35 1 1.1371 -4.6126 -1.1847 36 1 -1.2086 -4.9792 0.3453 37 1 -1.6165 -3.9946 -1.0803 38 1 0.7587 -6.7973 -0.8232 39 1 -2.7397 -7.1308 -0.9615 40 1 -3.0929 -5.6139 -1.8554 41 1 -3.2608 -7.2565 -3.6126 42 1 -1.9265 -8.2385 -2.9344 43 1 -3.6270 -8.4819 -5.9603 44 1 -0.5603 -4.6229 -3.1759 45 1 0.5690 -6.0031 -3.0838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724399621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:15 Heat of formation + Delta-G solvation = 41.412846 kcal Electronic energy + Delta-G solvation = -30318.577205 eV Core-core repulsion = 26145.297356 eV Total energy + Delta-G solvation = -4173.279849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.83430 -40.15934 -38.87461 -38.41695 -35.25803 -34.59245 -34.36663 -32.33776 -31.94808 -30.42894 -29.62094 -28.30129 -27.50205 -25.95645 -24.89697 -23.60852 -23.33026 -22.09125 -20.76193 -20.10241 -19.96987 -18.39311 -18.01232 -17.67775 -17.02370 -16.55409 -16.37867 -15.86871 -15.75839 -15.37015 -14.92127 -14.80734 -14.52168 -14.32831 -14.08455 -13.95799 -13.77716 -13.42317 -13.05984 -13.01439 -12.77914 -12.72540 -12.20022 -12.13553 -11.66765 -11.11517 -10.97869 -10.94061 -10.89488 -10.85228 -10.60918 -10.40360 -10.17356 -10.07497 -9.78324 -9.73920 -9.50429 -9.34721 -9.26258 -8.71851 -8.70000 -6.92949 -5.72804 -3.15427 0.08280 1.01304 2.08836 2.16608 2.58795 2.87898 3.35006 3.40512 3.43063 3.49494 3.70680 3.96054 4.07648 4.35258 4.36979 4.39067 4.47449 4.59627 4.67749 4.77047 4.96626 5.03409 5.08156 5.24129 5.27581 5.35421 5.41981 5.53597 5.67208 5.75120 5.85792 5.88590 6.04385 6.11434 6.15143 6.31290 6.41661 6.50296 6.52994 6.57178 7.16398 7.24007 7.49679 7.54447 7.58307 7.77079 7.84039 7.87255 8.27460 9.13688 9.74024 10.37671 11.31002 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002639 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.749289 B =10605.740170 C =11006.358219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.476 5.476 3 C 0.263 3.737 4 N -0.478 5.478 5 C -0.016 4.016 6 C 0.197 3.803 7 N -0.487 5.487 8 C 0.136 3.864 9 C -0.173 4.173 10 C 0.565 3.435 11 O -0.538 6.538 12 N -0.715 5.715 13 C 0.104 3.896 14 C 0.105 3.895 15 O -0.542 6.542 16 C -0.127 4.127 17 C 0.156 3.844 18 N -0.599 5.599 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.116 3.884 28 C 0.121 3.879 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.221 0.779 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.402 0.598 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.365 0.635 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.029 0.971 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 15.222 13.482 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.164 5.164 3 C -0.023 4.023 4 N -0.197 5.197 5 C -0.137 4.137 6 C 0.031 3.969 7 N -0.196 5.196 8 C -0.016 4.016 9 C -0.182 4.182 10 C 0.351 3.649 11 O -0.416 6.416 12 N -0.367 5.367 13 C -0.019 4.019 14 C 0.063 3.937 15 O -0.346 6.346 16 C -0.166 4.166 17 C 0.031 3.969 18 N -0.325 5.325 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.011 4.011 28 C 0.001 3.999 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.211 0.789 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.664 15.087 13.710 22.150 hybrid contribution -0.533 0.218 -1.179 1.312 sum 8.131 15.305 12.532 21.387 Atomic orbital electron populations 1.22293 0.74190 1.04345 1.05134 1.45268 1.08524 1.04900 1.57671 1.25629 0.84932 0.93621 0.98168 1.70492 1.18321 1.09858 1.21013 1.20155 0.92750 0.91645 1.09135 1.22333 0.98283 0.86221 0.90047 1.67714 1.23151 1.13850 1.14927 1.22779 0.85937 0.99831 0.93021 1.19865 0.95494 0.90368 1.12466 1.17928 0.87199 0.80503 0.79284 1.90774 1.47587 1.60114 1.43164 1.45992 1.13182 1.27103 1.50374 1.22174 0.82747 0.95590 1.01436 1.22567 0.94834 0.85138 0.91144 1.86644 1.23250 1.41168 1.83547 1.23055 0.91033 1.01159 1.01396 1.21949 0.97187 0.91605 0.86145 1.44416 1.35641 1.51078 1.01397 1.19099 1.13796 1.22679 0.79897 0.90483 1.24796 0.98276 0.99041 0.98353 1.69796 1.21774 1.32100 1.33109 0.85990 0.77299 0.77359 0.84775 1.20531 1.21631 1.21662 1.21917 0.94646 0.95652 0.88880 1.18646 0.91673 0.88583 1.01042 0.89496 0.89602 0.88909 0.76241 0.81226 0.81468 0.76294 0.90292 0.90147 0.78898 0.90978 0.90613 0.87396 0.96288 0.93638 0.95335 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.40 59.85 0.56 1.23 16 2 N -0.48 -4.70 3.18 -122.87 -0.39 -5.09 16 3 C 0.26 2.18 12.50 -89.56 -1.12 1.06 16 4 N -0.48 -5.25 11.28 -12.01 -0.14 -5.38 16 5 C -0.02 -0.18 7.27 -84.73 -0.62 -0.80 16 6 C 0.20 2.03 11.25 -17.12 -0.19 1.84 16 7 N -0.49 -5.28 10.30 -12.64 -0.13 -5.41 16 8 C 0.14 1.38 10.51 -17.08 -0.18 1.20 16 9 C -0.17 -1.99 5.79 -104.86 -0.61 -2.59 16 10 C 0.56 6.89 6.87 -12.47 -0.09 6.80 16 11 O -0.54 -7.63 13.27 5.29 0.07 -7.56 16 12 N -0.72 -8.02 5.05 -61.35 -0.31 -8.33 16 13 C 0.10 1.36 4.80 -4.04 -0.02 1.34 16 14 C 0.10 1.67 0.93 -88.79 -0.08 1.59 16 15 O -0.54 -8.41 13.10 -35.23 -0.46 -8.87 16 16 C -0.13 -2.32 6.26 -24.58 -0.15 -2.47 16 17 C 0.16 3.71 5.88 -2.53 -0.01 3.70 16 18 N -0.60 -14.85 3.39 -170.07 -0.58 -15.43 16 19 C -0.23 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 23 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.12 2.22 5.76 -3.06 -0.02 2.20 16 28 C 0.12 1.44 6.77 -83.81 -0.57 0.87 16 29 H 0.09 0.75 7.80 -51.93 -0.41 0.34 16 30 H 0.09 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.09 0.96 6.10 -51.93 -0.32 0.64 16 32 H 0.22 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.17 1.23 7.70 -52.49 -0.40 0.82 16 35 H 0.40 3.88 6.76 -40.82 -0.28 3.60 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.36 4.06 8.44 45.56 0.38 4.45 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.29 7.96 -51.93 -0.41 0.88 16 41 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 45 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -35.05 369.67 -9.23 -44.28 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.06 Total: 6.05 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -3.34 Total: 9.29 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.98 Total: -65.44 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.39 Total: -16.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.05 -9.23 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724399621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.694 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds