Wall clock time and date at job start Wed Apr 1 2020 03:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36252 * 126.29615 * 2 1 4 4 N 1.30133 * 110.05388 * 180.02562 * 3 2 1 5 5 C 1.35711 * 109.49387 * 359.75936 * 4 3 2 6 6 C 1.39470 * 134.42950 * 179.97438 * 5 4 3 7 7 N 1.31773 * 120.63583 * 180.02562 * 6 5 4 8 8 C 1.31941 * 122.59617 * 0.02562 * 7 6 5 9 9 C 1.39383 * 121.01891 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.75469 * 180.02562 * 9 8 7 11 11 O 1.21587 * 119.99577 * 143.05442 * 10 9 8 12 12 N 1.34776 * 119.99853 * 323.05967 * 10 9 8 13 13 C 1.46503 * 119.99530 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46903 * 179.97438 * 13 12 10 15 15 O 1.42903 * 110.64265 * 66.68918 * 14 13 12 16 16 C 1.55157 * 110.72200 * 190.02229 * 14 13 12 17 17 C 1.54908 * 101.58365 * 153.86725 * 16 14 13 18 18 N 1.47424 * 104.82929 * 322.98769 * 17 16 14 19 19 C 1.36943 * 125.64675 * 204.16247 * 18 17 16 20 20 H 1.08004 * 119.99363 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00161 * 359.96659 * 19 18 17 22 22 N 1.31613 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99893 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47455 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47351 * 119.99864 * 23 21 19 26 26 H 1.48501 * 109.46967 * 239.99526 * 23 21 19 27 27 C 1.47026 * 108.70502 * 24.13346 * 18 17 16 28 28 C 1.36917 * 126.29871 * 179.55483 * 2 1 3 29 29 H 1.08996 * 109.46987 * 264.48610 * 1 2 3 30 30 H 1.08998 * 109.46651 * 24.49297 * 1 2 3 31 31 H 1.09003 * 109.46557 * 144.48958 * 1 2 3 32 32 H 1.07998 * 124.97534 * 359.77711 * 3 2 1 33 33 H 1.08004 * 119.68725 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.49670 * 180.02562 * 8 7 6 35 35 H 0.96990 * 120.00349 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47032 * 299.99754 * 13 12 10 37 37 H 1.08994 * 109.47219 * 59.99849 * 13 12 10 38 38 H 0.96704 * 113.99565 * 300.69686 * 15 14 13 39 39 H 1.09003 * 111.00275 * 271.93983 * 16 14 13 40 40 H 1.09002 * 111.00535 * 35.79012 * 16 14 13 41 41 H 1.08996 * 110.36355 * 204.15462 * 17 16 14 42 42 H 1.08996 * 110.36668 * 81.82956 * 17 16 14 43 43 H 0.97008 * 120.00059 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.88224 * 239.52150 * 27 18 17 45 45 H 1.09001 * 109.88286 * 118.35210 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7342 -0.0005 5 6 3.5980 -0.6207 0.0044 6 6 4.6478 -1.5390 0.0058 7 7 4.4067 -2.8345 0.0107 8 6 3.1838 -3.3299 0.0140 9 6 2.0696 -2.4925 0.0130 10 6 0.7048 -3.0528 0.0172 11 8 -0.1761 -2.5028 0.6497 12 7 0.4345 -4.1741 -0.6799 13 6 -0.9210 -4.7301 -0.6761 14 6 -0.9565 -5.9930 -1.5389 15 8 -0.1717 -7.0300 -0.9467 16 6 -2.4178 -6.4646 -1.7619 17 6 -2.2969 -7.2277 -3.1046 18 7 -1.3239 -6.4507 -3.8939 19 6 -1.2322 -6.4393 -5.2602 20 1 -0.4816 -5.8335 -5.7459 21 6 -2.1038 -7.2066 -6.0208 22 7 -3.0181 -7.9454 -5.4288 23 14 -1.9791 -7.1904 -7.8845 24 1 -0.8774 -6.2852 -8.2991 25 1 -1.7018 -8.5647 -8.3740 26 1 -3.2594 -6.7082 -8.4621 27 6 -0.4689 -5.6896 -2.9713 28 6 2.2756 -1.1034 0.0086 29 1 -0.3633 -0.0987 1.0229 30 1 -0.3632 0.9352 -0.4261 31 1 -0.3632 -0.8366 -0.5970 32 1 1.9249 2.1209 -0.0034 33 1 5.6681 -1.1850 0.0029 34 1 3.0439 -4.4007 0.0184 35 1 1.1371 -4.6126 -1.1847 36 1 -1.2086 -4.9792 0.3453 37 1 -1.6165 -3.9946 -1.0803 38 1 0.7587 -6.7973 -0.8232 39 1 -2.7397 -7.1308 -0.9615 40 1 -3.0929 -5.6139 -1.8554 41 1 -3.2608 -7.2565 -3.6126 42 1 -1.9265 -8.2385 -2.9344 43 1 -3.6270 -8.4819 -5.9603 44 1 -0.5603 -4.6229 -3.1759 45 1 0.5690 -6.0031 -3.0838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724399621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:14 Heat of formation + Delta-G solvation = 14.840135 kcal Electronic energy + Delta-G solvation = -30319.729484 eV Core-core repulsion = 26145.297356 eV Total energy + Delta-G solvation = -4174.432128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56347 -41.19225 -39.99901 -39.39763 -36.83892 -35.50875 -35.24829 -34.01971 -32.93180 -31.44198 -31.06406 -29.68297 -28.24624 -27.52041 -26.01218 -24.94600 -24.09558 -23.02529 -22.18457 -21.38546 -21.22057 -19.31823 -18.89106 -18.75442 -18.47790 -17.69680 -17.22787 -16.86416 -16.76865 -16.68551 -16.20077 -15.80343 -15.70866 -15.52801 -15.31216 -14.88919 -14.83773 -14.67703 -14.46531 -13.93368 -13.85516 -13.67112 -13.49119 -13.30611 -13.11565 -12.90883 -12.81172 -12.37895 -12.08774 -12.00303 -11.92854 -11.72521 -11.69479 -11.55052 -11.34916 -10.94380 -10.76722 -10.60102 -10.28803 -10.07019 -9.46531 -8.92175 -7.79694 -5.24542 -0.68101 0.21857 1.31475 1.46166 1.46728 1.50624 1.56886 1.74627 1.94371 2.47150 2.70446 3.02061 3.15232 3.22376 3.30259 3.37943 3.43996 3.64908 3.70230 3.76081 3.88979 3.90901 3.94280 4.05917 4.32030 4.36075 4.47235 4.54520 4.59312 4.63588 4.72266 4.77468 4.93855 4.95321 4.99034 5.05549 5.15396 5.19745 5.32282 5.44895 5.60854 5.78666 5.93987 6.25988 6.28326 6.52589 6.79425 6.81708 6.94937 7.08048 7.75019 8.38105 9.22374 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002639 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.749289 B =10605.740170 C =11006.358219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.482 5.482 3 C 0.275 3.725 4 N -0.506 5.506 5 C -0.033 4.033 6 C 0.194 3.806 7 N -0.499 5.499 8 C 0.138 3.862 9 C -0.187 4.187 10 C 0.570 3.430 11 O -0.559 6.559 12 N -0.707 5.707 13 C 0.121 3.879 14 C 0.125 3.875 15 O -0.554 6.554 16 C -0.119 4.119 17 C 0.159 3.841 18 N -0.622 5.622 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.290 1.290 27 C 0.112 3.888 28 C 0.098 3.902 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.267 0.733 33 H 0.191 0.809 34 H 0.193 0.807 35 H 0.411 0.589 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.075 0.925 42 H -0.016 1.016 43 H 0.247 0.753 44 H 0.036 0.964 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 17.057 14.086 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.169 5.169 3 C -0.010 4.010 4 N -0.225 5.225 5 C -0.153 4.153 6 C 0.029 3.971 7 N -0.209 5.209 8 C -0.013 4.013 9 C -0.196 4.196 10 C 0.357 3.643 11 O -0.439 6.439 12 N -0.358 5.358 13 C -0.003 4.003 14 C 0.084 3.916 15 O -0.361 6.361 16 C -0.158 4.158 17 C 0.034 3.966 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.808 3.192 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.217 1.217 27 C -0.014 4.014 28 C -0.023 4.023 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.283 0.717 33 H 0.208 0.792 34 H 0.209 0.791 35 H 0.248 0.752 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.002 0.998 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.721 16.942 14.331 24.227 hybrid contribution -0.785 -0.307 -1.335 1.579 sum 8.936 16.635 12.996 22.924 Atomic orbital electron populations 1.22317 0.73359 1.05358 1.04561 1.45505 1.09093 1.04795 1.57498 1.26589 0.84056 0.94900 0.95488 1.70493 1.19847 1.09533 1.22641 1.20418 0.93016 0.92254 1.09638 1.22721 0.99169 0.86083 0.89118 1.67788 1.23419 1.14136 1.15564 1.23184 0.85445 1.00880 0.91832 1.19857 0.95237 0.90583 1.13889 1.17992 0.87298 0.80230 0.78789 1.90766 1.48302 1.60697 1.44122 1.45819 1.12681 1.26966 1.50382 1.21859 0.83642 0.93856 1.00945 1.22206 0.93198 0.86299 0.89947 1.86608 1.24984 1.41372 1.83144 1.22901 0.93229 1.01214 0.98447 1.21660 0.95241 0.90956 0.88737 1.44699 1.36979 1.51664 1.01511 1.19473 1.13518 1.22258 0.81577 0.90067 1.25626 0.98373 0.99270 1.02590 1.70050 1.22523 1.32919 1.34266 0.84996 0.77401 0.77087 0.79749 1.19093 1.22060 1.21715 1.22133 0.94294 0.95146 0.89804 1.18980 0.92438 0.89327 1.01588 0.90174 0.85870 0.91213 0.71717 0.79182 0.79057 0.75246 0.89498 0.90510 0.76472 0.89486 0.89332 0.90736 0.99794 0.94277 0.94641 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.40 127.77 1.20 2.44 16 2 N -0.48 -8.69 3.18 -542.64 -1.73 -10.41 16 3 C 0.27 3.91 12.50 179.98 2.25 6.16 16 4 N -0.51 -10.33 11.28 -191.90 -2.17 -12.49 16 5 C -0.03 -0.72 7.27 39.46 0.29 -0.44 16 6 C 0.19 3.80 11.25 85.00 0.96 4.76 16 7 N -0.50 -10.18 10.30 -193.91 -2.00 -12.18 16 8 C 0.14 2.59 10.51 84.95 0.89 3.48 16 9 C -0.19 -4.06 5.79 -20.02 -0.12 -4.17 16 10 C 0.57 13.04 6.87 86.70 0.60 13.64 16 11 O -0.56 -15.18 13.27 -3.99 -0.05 -15.24 16 12 N -0.71 -14.35 5.05 -466.28 -2.36 -16.70 16 13 C 0.12 2.89 4.80 86.38 0.41 3.31 16 14 C 0.13 3.77 0.93 -9.61 -0.01 3.76 16 15 O -0.55 -16.01 13.10 -148.98 -1.95 -17.96 16 16 C -0.12 -4.24 6.26 31.99 0.20 -4.04 16 17 C 0.16 7.77 5.88 86.85 0.51 8.28 16 18 N -0.62 -31.05 3.39 -691.99 -2.35 -33.40 16 19 C -0.24 -13.15 10.27 84.03 0.86 -12.29 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 22 N -0.95 -56.07 10.09 21.65 0.22 -55.85 16 23 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 27 C 0.11 4.15 5.76 86.73 0.50 4.65 16 28 C 0.10 2.21 6.77 39.50 0.27 2.48 16 29 H 0.08 1.28 7.80 -2.39 -0.02 1.26 16 30 H 0.12 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.07 1.37 6.10 -2.39 -0.01 1.36 16 32 H 0.27 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.19 2.37 7.70 -2.91 -0.02 2.35 16 35 H 0.41 6.92 6.76 -92.72 -0.63 6.30 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.95 8.03 -2.39 -0.02 1.94 16 38 H 0.39 7.51 8.44 -74.05 -0.62 6.88 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.09 2.92 7.96 -2.39 -0.02 2.90 16 41 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 42 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 44 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 45 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 Total: -1.00 -78.07 369.67 -1.27 -79.34 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.19 Total: 18.99 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 9.28 Total: 28.79 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -10.38 Total: -141.04 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -2.00 Total: -33.20 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.07 -1.27 -79.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724399621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.176 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds