Wall clock time and date at job start Wed Apr 1 2020 03:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28814 * 125.94429 * 2 1 4 4 N 1.28643 * 111.79227 * 180.02562 * 3 2 1 5 5 C 1.34752 * 109.29186 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.58691 * 180.02562 * 5 4 3 7 7 C 1.36169 * 119.97412 * 179.97438 * 6 5 4 8 8 C 1.40257 * 120.55278 * 0.02562 * 7 6 5 9 9 C 1.47723 * 119.87867 * 179.97438 * 8 7 6 10 10 O 1.21564 * 120.00259 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00122 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.00405 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47139 * 180.02562 * 12 11 9 14 14 O 1.42898 * 110.88633 * 303.87721 * 13 12 11 15 15 C 1.55152 * 111.00408 * 179.97438 * 13 12 11 16 16 C 1.54318 * 102.94511 * 206.38522 * 15 13 12 17 17 N 1.47022 * 107.27253 * 22.18990 * 16 15 13 18 18 C 1.36933 * 125.65341 * 181.02674 * 17 16 15 19 19 H 1.08006 * 120.00444 * 153.90406 * 18 17 16 20 20 C 1.38817 * 119.99751 * 333.90252 * 18 17 16 21 21 N 1.31616 * 120.00100 * 145.63931 * 20 18 17 22 22 Si 1.86797 * 119.99742 * 325.63468 * 20 18 17 23 23 H 1.48495 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46991 * 120.00404 * 22 20 18 25 25 H 1.48502 * 109.47132 * 239.99993 * 22 20 18 26 26 C 1.47424 * 108.69946 * 1.29134 * 17 16 15 27 27 C 1.39162 * 120.24380 * 0.23259 * 8 7 6 28 28 C 1.37370 * 125.94259 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47312 * 89.97699 * 1 2 3 30 30 H 1.08997 * 109.47311 * 209.97343 * 1 2 3 31 31 H 1.09000 * 109.47251 * 329.97414 * 1 2 3 32 32 H 1.07993 * 120.01737 * 359.97438 * 6 5 4 33 33 H 1.07991 * 119.72513 * 180.02562 * 7 6 5 34 34 H 0.97005 * 119.99678 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.47372 * 59.99647 * 12 11 9 36 36 H 1.09001 * 109.46705 * 299.99729 * 12 11 9 37 37 H 0.96701 * 113.99994 * 56.12246 * 14 13 12 38 38 H 1.09001 * 110.72609 * 88.01809 * 15 13 12 39 39 H 1.09005 * 110.72274 * 324.74668 * 15 13 12 40 40 H 1.09006 * 109.88476 * 262.77823 * 16 15 13 41 41 H 1.08998 * 109.88900 * 141.61115 * 16 15 13 42 42 H 0.97006 * 120.00091 * 5.05677 * 21 20 18 43 43 H 1.09000 * 110.36988 * 94.48149 * 26 17 16 44 44 H 1.09005 * 110.36594 * 216.80532 * 26 17 16 45 45 H 1.08002 * 120.24934 * 179.72445 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7283 -0.0005 5 6 3.5892 -0.6138 -0.0015 6 6 4.6696 -1.5027 -0.0019 7 6 4.4455 -2.8458 -0.0024 8 6 3.1368 -3.3503 -0.0031 9 6 2.9108 -4.8101 -0.0042 10 8 1.7775 -5.2498 -0.0042 11 7 3.9612 -5.6546 -0.0051 12 6 3.7372 -7.1024 -0.0068 13 6 5.0847 -7.8270 -0.0070 14 8 5.8864 -7.4116 -1.1146 15 6 4.8886 -9.3661 -0.0081 16 6 6.1812 -9.8798 0.6603 17 7 6.7319 -8.7720 1.4547 18 6 7.8877 -8.8130 2.1878 19 1 8.4347 -7.9028 2.3852 20 6 8.3564 -10.0244 2.6774 21 7 9.6515 -10.2441 2.7599 22 14 7.1491 -11.3428 3.2191 23 1 5.7608 -10.8521 3.0264 24 1 7.3575 -12.5686 2.4072 25 1 7.3691 -11.6561 4.6539 26 6 5.8302 -7.6116 1.3363 27 6 2.0504 -2.4806 -0.0081 28 6 2.2713 -1.1122 -0.0005 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 5.6809 -1.1239 -0.0019 33 1 5.2824 -3.5283 -0.0024 34 1 4.8656 -5.3038 -0.0047 35 1 3.1738 -7.3819 -0.8970 36 1 3.1739 -7.3838 0.8829 37 1 6.0364 -6.4572 -1.1555 38 1 4.8051 -9.7436 -1.0272 39 1 4.0138 -9.6438 0.5800 40 1 6.8988 -10.1810 -0.1030 41 1 5.9521 -10.7241 1.3105 42 1 10.2783 -9.5345 2.5485 43 1 5.1239 -7.5938 2.1663 44 1 6.4051 -6.6860 1.3064 45 1 1.0426 -2.8690 -0.0130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724421543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:34 Heat of formation + Delta-G solvation = 72.114740 kcal Electronic energy + Delta-G solvation = -29589.335764 eV Core-core repulsion = 25417.387249 eV Total energy + Delta-G solvation = -4171.948515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.62780 -40.43744 -38.89548 -37.72104 -35.45828 -35.32497 -34.39239 -32.44047 -31.37346 -31.28858 -29.94452 -28.63472 -28.35173 -26.23985 -24.65463 -23.99570 -23.03267 -21.62143 -21.26465 -20.48975 -20.19368 -18.92493 -18.20761 -17.55727 -17.36927 -17.18861 -16.31856 -16.21142 -15.53421 -15.23280 -15.06579 -14.74243 -14.62895 -14.22394 -14.09383 -13.79278 -13.70553 -13.54651 -13.43429 -13.12884 -12.99443 -12.57561 -12.53760 -12.24400 -12.17949 -11.85016 -11.36167 -11.26645 -11.19210 -11.16351 -10.89234 -10.65305 -10.58225 -10.22555 -9.82847 -9.59937 -9.52056 -9.30983 -9.29704 -8.82606 -8.27475 -7.09369 -6.33973 -3.28420 -0.12835 0.69441 1.65377 1.67271 2.54295 2.76853 3.31477 3.44494 3.46371 3.51068 3.65113 3.92768 4.13904 4.21585 4.27088 4.42088 4.51053 4.51511 4.55384 4.58081 4.71339 4.82223 4.86134 4.90011 5.07867 5.19219 5.36928 5.39704 5.49791 5.60823 5.65068 5.69736 5.74055 5.83428 5.95964 6.00510 6.07250 6.11919 6.14215 6.32978 6.37734 6.68880 6.85116 7.13230 7.73198 7.84692 7.86164 7.87352 8.34643 8.98063 9.57617 10.30579 11.03213 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002218 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.132714 B =12623.205347 C =13237.100717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.014 5.014 4 N -0.256 5.256 5 C 0.029 3.971 6 C -0.051 4.051 7 C -0.091 4.091 8 C -0.102 4.102 9 C 0.563 3.437 10 O -0.535 6.535 11 N -0.718 5.718 12 C 0.104 3.896 13 C 0.102 3.898 14 O -0.535 6.535 15 C -0.114 4.114 16 C 0.127 3.873 17 N -0.595 5.595 18 C -0.343 4.343 19 H 0.065 0.935 20 C -0.004 4.004 21 N -0.900 5.900 22 Si 1.049 2.951 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.297 1.297 26 C 0.109 3.891 27 C -0.032 4.032 28 C 0.012 3.988 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.364 0.636 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.266 0.734 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 17.937 -7.808 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.115 5.115 3 N 0.005 4.995 4 N -0.130 5.130 5 C -0.097 4.097 6 C -0.073 4.073 7 C -0.112 4.112 8 C -0.109 4.109 9 C 0.350 3.650 10 O -0.412 6.412 11 N -0.370 5.370 12 C -0.020 4.020 13 C 0.059 3.941 14 O -0.339 6.339 15 C -0.152 4.152 16 C 0.002 3.998 17 N -0.322 5.322 18 C -0.471 4.471 19 H 0.083 0.917 20 C -0.209 4.209 21 N -0.538 5.538 22 Si 0.880 3.120 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.225 1.225 26 C -0.017 4.017 27 C -0.054 4.054 28 C -0.107 4.107 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.236 0.764 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.211 0.789 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.717 16.948 -7.312 27.008 hybrid contribution 0.293 1.295 -0.295 1.360 sum -19.424 18.243 -7.607 27.712 Atomic orbital electron populations 1.22312 0.71769 1.06246 1.05247 1.47159 1.08965 1.02944 1.52462 1.78018 0.96935 1.12288 1.12292 1.75397 1.07514 1.11258 1.18828 1.20112 0.93221 0.91266 1.05082 1.19961 0.97819 0.90977 0.98543 1.20910 0.95957 0.95312 0.99029 1.19722 0.93409 0.93065 1.04672 1.17964 0.84865 0.85572 0.76612 1.90791 1.22340 1.78397 1.49704 1.45844 1.09189 1.07142 1.74861 1.22078 0.98173 0.78284 1.03491 1.22734 0.87816 0.95528 0.87984 1.86644 1.72833 1.27035 1.47421 1.22570 0.99448 0.91507 1.01690 1.21592 0.92364 0.92092 0.93734 1.44525 1.24323 1.09139 1.54219 1.19730 0.98052 0.96844 1.32447 0.91690 1.26065 0.98784 0.99210 0.96795 1.70918 1.01349 1.32578 1.48984 0.84033 0.75836 0.75554 0.76576 1.20578 1.21857 1.22546 1.22298 0.93002 0.93442 0.92980 1.20036 1.00391 0.87618 0.97381 1.19606 0.91079 0.90812 1.09176 0.88901 0.88109 0.87645 0.83476 0.84041 0.76434 0.90304 0.89906 0.78949 0.90185 0.90081 0.94195 0.95126 0.92334 0.95292 0.93966 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.40 59.85 0.68 0.96 16 2 N -0.31 -2.65 3.80 -65.54 -0.25 -2.90 16 3 N -0.01 -0.16 13.07 60.35 0.79 0.63 16 4 N -0.26 -3.11 12.42 32.09 0.40 -2.71 16 5 C 0.03 0.31 7.36 -84.95 -0.63 -0.31 16 6 C -0.05 -0.43 10.03 -39.70 -0.40 -0.83 16 7 C -0.09 -0.70 9.46 -39.57 -0.37 -1.07 16 8 C -0.10 -0.95 5.88 -104.92 -0.62 -1.56 16 9 C 0.56 6.34 7.77 -12.38 -0.10 6.25 16 10 O -0.53 -7.66 16.32 5.31 0.09 -7.57 16 11 N -0.72 -7.36 5.15 -61.29 -0.32 -7.67 16 12 C 0.10 1.26 4.88 -4.04 -0.02 1.24 16 13 C 0.10 1.51 0.97 -88.35 -0.09 1.42 16 14 O -0.54 -7.98 13.21 -35.23 -0.47 -8.44 16 15 C -0.11 -1.84 6.15 -24.90 -0.15 -1.99 16 16 C 0.13 2.72 6.04 -3.07 -0.02 2.71 16 17 N -0.60 -14.16 3.05 -169.93 -0.52 -14.68 16 18 C -0.34 -9.62 10.24 -15.06 -0.15 -9.77 16 19 H 0.07 1.93 8.06 -52.48 -0.42 1.50 16 20 C 0.00 -0.13 5.29 -17.43 -0.09 -0.22 16 21 N -0.90 -27.57 13.70 55.49 0.76 -26.81 16 22 Si 1.05 25.86 26.22 -169.99 -4.46 21.41 16 23 H -0.28 -6.43 6.18 56.52 0.35 -6.08 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.11 2.02 6.22 -2.41 -0.02 2.00 16 27 C -0.03 -0.28 9.59 -39.10 -0.38 -0.66 16 28 C 0.01 0.11 6.93 -84.24 -0.58 -0.47 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.14 0.74 6.36 -52.49 -0.33 0.41 16 34 H 0.40 3.26 5.28 -40.82 -0.22 3.04 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.36 3.90 7.69 45.56 0.35 4.25 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 42 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 43 H 0.03 0.54 7.99 -51.93 -0.41 0.13 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.15 1.15 7.63 -52.49 -0.40 0.75 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -37.25 372.32 -6.35 -43.60 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.06 Total: 1.86 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.93 Total: -2.31 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.86 Total: -54.15 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.38 Total: -16.01 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -4.46 Total: 21.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.25 -6.35 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724421543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.711 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds