Wall clock time and date at job start Wed Apr 1 2020 03:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28814 * 125.94707 * 2 1 4 4 N 1.28640 * 111.79526 * 180.02562 * 3 2 1 5 5 C 1.34747 * 109.29189 * 359.97438 * 4 3 2 6 6 C 1.39911 * 134.58805 * 180.02562 * 5 4 3 7 7 C 1.36167 * 119.97353 * 179.75571 * 6 5 4 8 8 C 1.40258 * 120.55783 * 0.47170 * 7 6 5 9 9 C 1.47708 * 119.88121 * 179.77701 * 8 7 6 10 10 O 1.21569 * 120.00398 * 179.72824 * 9 8 7 11 11 N 1.34782 * 120.00072 * 359.73096 * 9 8 7 12 12 C 1.46505 * 120.00055 * 183.45897 * 11 9 8 13 13 C 1.53000 * 113.27908 * 306.24996 * 12 11 9 14 14 C 1.53009 * 109.47020 * 292.15548 * 13 12 11 15 15 O 1.42900 * 109.46752 * 184.81058 * 14 13 12 16 16 C 1.53487 * 114.20712 * 173.18238 * 12 11 9 17 17 N 1.47066 * 87.98534 * 220.14676 * 16 12 11 18 18 C 1.36936 * 136.05788 * 207.07923 * 17 16 12 19 19 H 1.07999 * 120.00043 * 354.43202 * 18 17 16 20 20 C 1.38810 * 120.00020 * 174.42068 * 18 17 16 21 21 N 1.31624 * 119.99819 * 182.16396 * 20 18 17 22 22 Si 1.86799 * 119.99899 * 2.43935 * 20 18 17 23 23 H 1.48503 * 109.47137 * 173.51233 * 22 20 18 24 24 H 1.48492 * 109.47085 * 293.51061 * 22 20 18 25 25 H 1.48492 * 109.46980 * 53.51235 * 22 20 18 26 26 C 1.47062 * 87.88507 * 27.34366 * 17 16 12 27 27 C 1.39171 * 120.23614 * 359.50752 * 8 7 6 28 28 C 1.37372 * 125.94096 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46578 * 269.95607 * 1 2 3 30 30 H 1.08999 * 109.46840 * 29.95443 * 1 2 3 31 31 H 1.08994 * 109.47127 * 149.95288 * 1 2 3 32 32 H 1.08000 * 120.01225 * 359.96736 * 6 5 4 33 33 H 1.07999 * 119.72107 * 180.23774 * 7 6 5 34 34 H 0.96993 * 119.99687 * 3.45596 * 11 9 8 35 35 H 1.08990 * 109.47465 * 52.15563 * 13 12 11 36 36 H 1.08998 * 109.47001 * 172.15914 * 13 12 11 37 37 H 1.09003 * 109.46422 * 304.81014 * 14 13 12 38 38 H 1.09000 * 109.46894 * 64.80899 * 14 13 12 39 39 H 0.96701 * 113.99267 * 179.97438 * 15 14 13 40 40 H 1.09006 * 113.47060 * 105.36620 * 16 12 11 41 41 H 1.09005 * 113.52206 * 334.93541 * 16 12 11 42 42 H 0.96999 * 119.99803 * 5.29663 * 21 20 18 43 43 H 1.08996 * 113.47031 * 87.43837 * 26 17 16 44 44 H 1.09000 * 113.46689 * 217.87746 * 26 17 16 45 45 H 1.07993 * 120.24295 * 180.27531 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0428 0.0000 4 7 3.4686 0.7283 -0.0005 5 6 3.5893 -0.6137 -0.0004 6 6 4.6697 -1.5027 -0.0003 7 6 4.4455 -2.8458 0.0049 8 6 3.1369 -3.3504 0.0003 9 6 2.9110 -4.8101 0.0011 10 8 1.7776 -5.2498 0.0021 11 7 3.9614 -5.6546 0.0008 12 6 3.7388 -7.1006 -0.0750 13 6 2.7840 -7.6226 1.0005 14 6 3.4445 -7.4942 2.3747 15 8 2.6003 -8.0834 3.3658 16 6 5.0222 -7.9276 -0.2323 17 7 4.2933 -8.7823 -1.1816 18 6 4.3730 -10.0844 -1.5980 19 1 5.1827 -10.7120 -1.2562 20 6 3.4130 -10.5976 -2.4593 21 7 3.4655 -11.8607 -2.8258 22 14 2.0510 -9.4937 -3.1042 23 1 1.2550 -10.2307 -4.1184 24 1 1.1683 -9.0890 -1.9808 25 1 2.6470 -8.2842 -3.7261 26 6 3.4454 -7.6214 -1.4916 27 6 2.0504 -2.4806 0.0006 28 6 2.2713 -1.1122 -0.0005 29 1 -0.3632 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 5.6810 -1.1238 -0.0009 33 1 5.2825 -3.5283 0.0089 34 1 4.8648 -5.3049 0.0506 35 1 1.8637 -7.0388 0.9838 36 1 2.5536 -8.6698 0.8046 37 1 4.4062 -8.0073 2.3648 38 1 3.5972 -6.4403 2.6073 39 1 2.9572 -8.0385 4.2634 40 1 5.3189 -8.4463 0.6793 41 1 5.8431 -7.3742 -0.6885 42 1 4.1280 -12.4518 -2.4353 43 1 3.8499 -6.9866 -2.2799 44 1 2.3986 -7.8792 -1.6529 45 1 1.0427 -2.8690 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725206568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:16 Heat of formation + Delta-G solvation = 109.399826 kcal Electronic energy + Delta-G solvation = -30265.111299 eV Core-core repulsion = 26094.779587 eV Total energy + Delta-G solvation = -4170.331712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.54776 -40.60596 -38.91129 -37.41981 -36.57268 -35.25860 -34.05786 -32.38943 -31.20816 -31.19277 -30.29654 -28.32959 -27.38798 -25.74230 -25.08168 -23.90722 -23.10490 -21.86581 -21.52465 -20.63742 -19.14539 -18.56983 -18.07596 -17.55381 -17.33647 -17.10963 -16.77665 -16.04779 -15.55622 -15.31643 -14.97117 -14.66333 -14.62500 -14.24855 -14.03019 -13.91331 -13.70436 -13.54443 -13.32900 -13.14322 -12.51712 -12.43436 -12.28375 -12.10263 -11.99797 -11.86569 -11.58846 -11.25743 -11.18366 -11.07994 -10.88806 -10.52235 -10.40959 -9.98635 -9.61473 -9.38740 -9.37380 -9.16492 -8.97158 -8.81156 -8.67415 -7.24630 -6.35153 -3.30721 -0.01930 0.77978 1.73775 1.77636 2.70266 2.99901 3.44140 3.46383 3.47005 3.55477 3.65687 4.01158 4.21626 4.24616 4.37738 4.50667 4.56993 4.61078 4.63049 4.65608 4.80578 4.86191 4.93017 4.95927 5.32747 5.35823 5.44408 5.45844 5.55503 5.61633 5.65622 5.77979 5.81991 5.88209 6.01303 6.04679 6.14722 6.18809 6.19079 6.28129 6.49511 6.65361 6.89194 6.97054 7.51361 7.75504 7.91788 8.17610 8.18918 8.91468 9.42931 10.25046 11.16172 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002868 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.412137 B = 9759.140996 C =10248.015528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.016 5.016 4 N -0.258 5.258 5 C 0.027 3.973 6 C -0.055 4.055 7 C -0.090 4.090 8 C -0.098 4.098 9 C 0.559 3.441 10 O -0.523 6.523 11 N -0.706 5.706 12 C 0.134 3.866 13 C -0.107 4.107 14 C 0.084 3.916 15 O -0.571 6.571 16 C 0.123 3.877 17 N -0.616 5.616 18 C -0.304 4.304 19 H 0.085 0.915 20 C -0.018 4.018 21 N -0.931 5.931 22 Si 1.067 2.933 23 H -0.294 1.294 24 H -0.287 1.287 25 H -0.290 1.290 26 C 0.096 3.904 27 C -0.033 4.033 28 C 0.013 3.987 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.373 0.627 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 23.540 10.025 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.115 5.115 3 N 0.003 4.997 4 N -0.132 5.132 5 C -0.099 4.099 6 C -0.077 4.077 7 C -0.112 4.112 8 C -0.106 4.106 9 C 0.345 3.655 10 O -0.400 6.400 11 N -0.358 5.358 12 C 0.047 3.953 13 C -0.145 4.145 14 C 0.006 3.994 15 O -0.376 6.376 16 C -0.004 4.004 17 N -0.344 5.344 18 C -0.430 4.430 19 H 0.103 0.897 20 C -0.218 4.218 21 N -0.572 5.572 22 Si 0.900 3.100 23 H -0.222 1.222 24 H -0.215 1.215 25 H -0.217 1.217 26 C -0.030 4.030 27 C -0.056 4.056 28 C -0.105 4.105 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.219 0.781 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.267 24.386 8.358 25.985 hybrid contribution 2.100 -0.685 1.401 2.616 sum -1.167 23.701 9.759 25.658 Atomic orbital electron populations 1.22316 0.71757 1.06269 1.05246 1.47150 1.08966 1.02962 1.52436 1.77996 0.96929 1.12340 1.12463 1.75369 1.07571 1.11294 1.18990 1.20095 0.93249 0.91235 1.05356 1.19920 0.97613 0.91009 0.99123 1.20915 0.96068 0.95163 0.99030 1.19863 0.93275 0.93499 1.03918 1.18021 0.85292 0.85298 0.76908 1.90773 1.22413 1.77910 1.48893 1.45919 1.08800 1.06741 1.74361 1.22527 0.98779 0.76916 0.97042 1.21450 0.98980 1.04024 0.90024 1.22112 0.92959 0.95513 0.88778 1.86525 1.49063 1.82778 1.19231 1.22636 0.92466 0.90991 0.94351 1.45740 1.36606 1.05415 1.46670 1.20099 1.11137 0.82564 1.29181 0.89735 1.25673 0.99980 0.98751 0.97355 1.70929 1.38179 1.03881 1.44239 0.83749 0.76275 0.73844 0.76108 1.22183 1.21526 1.21737 1.23180 0.97419 0.89094 0.93337 1.20083 1.00602 0.87568 0.97322 1.19624 0.91034 0.90830 1.09061 0.88913 0.87697 0.88031 0.83727 0.84052 0.76524 0.88671 0.88891 0.93647 0.94540 0.78146 0.92615 0.93946 0.92818 0.93539 0.92136 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.41 59.85 0.68 1.05 16 2 N -0.31 -2.91 3.80 -65.54 -0.25 -3.16 16 3 N -0.02 -0.19 13.07 60.35 0.79 0.60 16 4 N -0.26 -3.22 12.42 32.09 0.40 -2.83 16 5 C 0.03 0.30 7.36 -84.95 -0.63 -0.33 16 6 C -0.05 -0.47 10.03 -39.70 -0.40 -0.87 16 7 C -0.09 -0.73 9.46 -39.57 -0.37 -1.10 16 8 C -0.10 -1.04 5.88 -104.92 -0.62 -1.65 16 9 C 0.56 7.49 7.56 -12.39 -0.09 7.40 16 10 O -0.52 -8.91 14.08 5.30 0.07 -8.83 16 11 N -0.71 -8.88 5.19 -48.28 -0.25 -9.13 16 12 C 0.13 2.25 0.82 -131.57 -0.11 2.14 16 13 C -0.11 -1.90 4.91 -26.73 -0.13 -2.03 16 14 C 0.08 1.20 6.89 37.16 0.26 1.46 16 15 O -0.57 -8.37 13.66 -35.23 -0.48 -8.85 16 16 C 0.12 2.18 7.81 -8.52 -0.07 2.11 16 17 N -0.62 -14.55 3.46 -184.60 -0.64 -15.19 16 18 C -0.30 -8.54 11.09 -15.06 -0.17 -8.71 16 19 H 0.08 2.48 8.05 -52.49 -0.42 2.06 16 20 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 21 N -0.93 -29.19 13.70 55.49 0.76 -28.43 16 22 Si 1.07 27.37 25.05 -169.99 -4.26 23.11 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.29 -7.14 6.51 56.52 0.37 -6.77 16 25 H -0.29 -7.00 6.53 56.52 0.37 -6.63 16 26 C 0.10 2.04 5.30 -8.38 -0.04 1.99 16 27 C -0.03 -0.34 9.59 -39.10 -0.38 -0.71 16 28 C 0.01 0.14 6.93 -84.23 -0.58 -0.45 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 0.74 6.36 -52.49 -0.33 0.41 16 34 H 0.40 3.55 6.68 -40.82 -0.27 3.28 16 35 H 0.09 1.82 5.78 -51.93 -0.30 1.52 16 36 H 0.09 1.98 7.94 -51.93 -0.41 1.57 16 37 H 0.05 0.61 6.63 -51.93 -0.34 0.27 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.37 3.41 9.12 45.56 0.42 3.82 16 40 H 0.06 0.94 6.70 -51.93 -0.35 0.60 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 43 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 44 H 0.06 1.42 3.99 -51.93 -0.21 1.21 16 45 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -38.01 369.55 -5.83 -43.84 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.80 Total: 3.66 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.74 Total: -0.35 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.81 Total: -58.14 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.41 Total: -17.68 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.26 Total: 23.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.01 -5.83 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.237 kcal (2) G-P(sol) polarization free energy of solvation -38.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds