Wall clock time and date at job start Wed Apr 1 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28814 * 125.94707 * 2 1 4 4 N 1.28640 * 111.79526 * 180.02562 * 3 2 1 5 5 C 1.34747 * 109.29189 * 359.97438 * 4 3 2 6 6 C 1.39911 * 134.58805 * 180.02562 * 5 4 3 7 7 C 1.36167 * 119.97353 * 179.75571 * 6 5 4 8 8 C 1.40258 * 120.55783 * 0.47170 * 7 6 5 9 9 C 1.47708 * 119.88121 * 179.77701 * 8 7 6 10 10 O 1.21569 * 120.00398 * 179.72824 * 9 8 7 11 11 N 1.34782 * 120.00072 * 359.73096 * 9 8 7 12 12 C 1.46505 * 120.00055 * 183.45897 * 11 9 8 13 13 C 1.53000 * 113.27908 * 306.24996 * 12 11 9 14 14 C 1.53009 * 109.47020 * 292.15548 * 13 12 11 15 15 O 1.42900 * 109.46752 * 184.81058 * 14 13 12 16 16 C 1.53487 * 114.20712 * 173.18238 * 12 11 9 17 17 N 1.47066 * 87.98534 * 220.14676 * 16 12 11 18 18 C 1.36936 * 136.05788 * 207.07923 * 17 16 12 19 19 H 1.07999 * 120.00043 * 354.43202 * 18 17 16 20 20 C 1.38810 * 120.00020 * 174.42068 * 18 17 16 21 21 N 1.31624 * 119.99819 * 182.16396 * 20 18 17 22 22 Si 1.86799 * 119.99899 * 2.43935 * 20 18 17 23 23 H 1.48503 * 109.47137 * 173.51233 * 22 20 18 24 24 H 1.48492 * 109.47085 * 293.51061 * 22 20 18 25 25 H 1.48492 * 109.46980 * 53.51235 * 22 20 18 26 26 C 1.47062 * 87.88507 * 27.34366 * 17 16 12 27 27 C 1.39171 * 120.23614 * 359.50752 * 8 7 6 28 28 C 1.37372 * 125.94096 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46578 * 269.95607 * 1 2 3 30 30 H 1.08999 * 109.46840 * 29.95443 * 1 2 3 31 31 H 1.08994 * 109.47127 * 149.95288 * 1 2 3 32 32 H 1.08000 * 120.01225 * 359.96736 * 6 5 4 33 33 H 1.07999 * 119.72107 * 180.23774 * 7 6 5 34 34 H 0.96993 * 119.99687 * 3.45596 * 11 9 8 35 35 H 1.08990 * 109.47465 * 52.15563 * 13 12 11 36 36 H 1.08998 * 109.47001 * 172.15914 * 13 12 11 37 37 H 1.09003 * 109.46422 * 304.81014 * 14 13 12 38 38 H 1.09000 * 109.46894 * 64.80899 * 14 13 12 39 39 H 0.96701 * 113.99267 * 179.97438 * 15 14 13 40 40 H 1.09006 * 113.47060 * 105.36620 * 16 12 11 41 41 H 1.09005 * 113.52206 * 334.93541 * 16 12 11 42 42 H 0.96999 * 119.99803 * 5.29663 * 21 20 18 43 43 H 1.08996 * 113.47031 * 87.43837 * 26 17 16 44 44 H 1.09000 * 113.46689 * 217.87746 * 26 17 16 45 45 H 1.07993 * 120.24295 * 180.27531 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0428 0.0000 4 7 3.4686 0.7283 -0.0005 5 6 3.5893 -0.6137 -0.0004 6 6 4.6697 -1.5027 -0.0003 7 6 4.4455 -2.8458 0.0049 8 6 3.1369 -3.3504 0.0003 9 6 2.9110 -4.8101 0.0011 10 8 1.7776 -5.2498 0.0021 11 7 3.9614 -5.6546 0.0008 12 6 3.7388 -7.1006 -0.0750 13 6 2.7840 -7.6226 1.0005 14 6 3.4445 -7.4942 2.3747 15 8 2.6003 -8.0834 3.3658 16 6 5.0222 -7.9276 -0.2323 17 7 4.2933 -8.7823 -1.1816 18 6 4.3730 -10.0844 -1.5980 19 1 5.1827 -10.7120 -1.2562 20 6 3.4130 -10.5976 -2.4593 21 7 3.4655 -11.8607 -2.8258 22 14 2.0510 -9.4937 -3.1042 23 1 1.2550 -10.2307 -4.1184 24 1 1.1683 -9.0890 -1.9808 25 1 2.6470 -8.2842 -3.7261 26 6 3.4454 -7.6214 -1.4916 27 6 2.0504 -2.4806 0.0006 28 6 2.2713 -1.1122 -0.0005 29 1 -0.3632 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 5.6810 -1.1238 -0.0009 33 1 5.2825 -3.5283 0.0089 34 1 4.8648 -5.3049 0.0506 35 1 1.8637 -7.0388 0.9838 36 1 2.5536 -8.6698 0.8046 37 1 4.4062 -8.0073 2.3648 38 1 3.5972 -6.4403 2.6073 39 1 2.9572 -8.0385 4.2634 40 1 5.3189 -8.4463 0.6793 41 1 5.8431 -7.3742 -0.6885 42 1 4.1280 -12.4518 -2.4353 43 1 3.8499 -6.9866 -2.2799 44 1 2.3986 -7.8792 -1.6529 45 1 1.0427 -2.8690 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725206568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:14 Heat of formation + Delta-G solvation = 76.854506 kcal Electronic energy + Delta-G solvation = -30266.522570 eV Core-core repulsion = 26094.779587 eV Total energy + Delta-G solvation = -4171.742983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.28443 -41.86558 -40.10454 -38.35450 -37.72648 -35.92928 -35.49947 -34.24978 -32.44757 -31.88521 -31.32503 -29.20157 -28.83877 -27.30268 -26.08879 -24.65593 -24.41957 -23.33614 -22.20486 -21.91466 -20.56113 -19.53215 -19.48658 -18.77239 -18.49097 -17.89838 -17.79949 -17.17590 -16.94174 -16.49364 -16.18845 -15.88859 -15.54400 -15.33175 -15.27514 -15.08854 -14.96474 -14.44306 -14.37513 -13.87283 -13.79833 -13.54761 -13.44482 -13.26502 -13.18717 -13.07158 -12.78314 -12.73805 -12.55120 -12.31198 -11.95800 -11.84084 -11.81060 -11.36876 -11.22884 -11.13234 -11.00927 -10.58721 -10.22823 -10.02812 -9.44240 -9.23789 -8.63129 -5.49313 -0.79267 0.09557 0.96839 1.14945 1.35816 1.42938 1.61019 1.79979 1.92011 2.47574 2.64430 2.82118 2.96260 3.05767 3.18987 3.45626 3.48551 3.55354 3.60548 3.92063 3.96868 4.07020 4.14680 4.24019 4.27071 4.28045 4.37877 4.43369 4.51961 4.55322 4.56000 4.59371 4.77186 4.82359 4.85421 4.93275 5.04570 5.10488 5.15166 5.16598 5.25215 5.40918 5.49958 5.57855 5.93966 6.52928 6.68176 6.93295 7.14867 7.18083 7.29999 8.21090 8.90872 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002868 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.412137 B = 9759.140996 C =10248.015528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.306 5.306 3 N -0.032 5.032 4 N -0.289 5.289 5 C 0.012 3.988 6 C -0.054 4.054 7 C -0.076 4.076 8 C -0.105 4.105 9 C 0.562 3.438 10 O -0.562 6.562 11 N -0.690 5.690 12 C 0.163 3.837 13 C -0.106 4.106 14 C 0.092 3.908 15 O -0.596 6.596 16 C 0.129 3.871 17 N -0.649 5.649 18 C -0.277 4.277 19 H 0.063 0.937 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 1.103 2.897 23 H -0.304 1.304 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.083 3.917 27 C -0.032 4.032 28 C 0.001 3.999 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.422 0.578 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 26.429 11.246 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.107 5.107 3 N -0.012 5.012 4 N -0.163 5.163 5 C -0.115 4.115 6 C -0.076 4.076 7 C -0.097 4.097 8 C -0.112 4.112 9 C 0.350 3.650 10 O -0.442 6.442 11 N -0.344 5.344 12 C 0.075 3.925 13 C -0.145 4.145 14 C 0.014 3.986 15 O -0.404 6.404 16 C 0.003 3.997 17 N -0.378 5.378 18 C -0.405 4.405 19 H 0.081 0.919 20 C -0.271 4.271 21 N -0.617 5.617 22 Si 0.933 3.067 23 H -0.232 1.232 24 H -0.214 1.214 25 H -0.192 1.192 26 C -0.043 4.043 27 C -0.055 4.055 28 C -0.119 4.119 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.188 0.812 33 H 0.194 0.806 34 H 0.262 0.738 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.247 0.753 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.921 27.376 9.634 29.085 hybrid contribution 1.676 -1.489 1.139 2.515 sum -0.245 25.887 10.773 28.040 Atomic orbital electron populations 1.22762 0.69294 1.07812 1.06896 1.47545 1.10318 1.02213 1.50652 1.77919 0.97119 1.13151 1.13051 1.75318 1.08183 1.12278 1.20476 1.20575 0.94427 0.91113 1.05370 1.20246 0.98193 0.90790 0.98375 1.21186 0.95790 0.95465 0.97274 1.19650 0.94600 0.91438 1.05533 1.18367 0.84579 0.86363 0.75652 1.90775 1.24105 1.78743 1.50544 1.45563 1.10115 1.04564 1.74127 1.21774 0.97607 0.79282 0.93883 1.21361 0.99278 1.00945 0.92922 1.22013 0.92546 0.97247 0.86771 1.86466 1.49957 1.83027 1.20994 1.22872 0.93171 0.90051 0.93588 1.45725 1.38713 1.05008 1.48317 1.19977 1.09074 0.84686 1.26783 0.91926 1.26663 1.02302 0.99155 0.98976 1.71001 1.39238 1.05002 1.46498 0.83270 0.74528 0.73334 0.75598 1.23219 1.21372 1.19238 1.23390 0.95641 0.88633 0.96635 1.20112 1.00863 0.87519 0.96985 1.19711 0.91287 0.91060 1.09802 0.87171 0.86070 0.86673 0.81224 0.80584 0.73788 0.90201 0.93305 0.92421 0.91845 0.75317 0.91479 0.90090 0.94086 0.92156 0.94668 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.41 127.77 1.46 1.93 16 2 N -0.31 -5.19 3.80 -361.28 -1.37 -6.56 16 3 N -0.03 -0.69 13.07 37.02 0.48 -0.21 16 4 N -0.29 -6.89 12.42 -52.39 -0.65 -7.54 16 5 C 0.01 0.24 7.36 39.75 0.29 0.53 16 6 C -0.05 -0.74 10.03 22.19 0.22 -0.51 16 7 C -0.08 -0.89 9.46 22.28 0.21 -0.68 16 8 C -0.11 -1.88 5.88 -20.06 -0.12 -1.99 16 9 C 0.56 13.40 7.56 86.75 0.66 14.06 16 10 O -0.56 -18.32 14.08 -3.93 -0.06 -18.38 16 11 N -0.69 -14.53 5.19 -424.92 -2.20 -16.73 16 12 C 0.16 5.02 0.82 4.16 0.00 5.02 16 13 C -0.11 -3.68 4.91 30.60 0.15 -3.53 16 14 C 0.09 2.36 6.89 71.99 0.50 2.86 16 15 O -0.60 -16.26 13.66 -148.98 -2.04 -18.29 16 16 C 0.13 4.11 7.81 83.17 0.65 4.76 16 17 N -0.65 -29.87 3.46 -737.95 -2.56 -32.43 16 18 C -0.28 -15.76 11.09 84.03 0.93 -14.82 16 19 H 0.06 3.76 8.05 -2.91 -0.02 3.74 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -63.15 13.70 21.65 0.30 -62.85 16 22 Si 1.10 56.63 25.05 68.60 1.72 58.35 16 23 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 24 H -0.29 -14.36 6.51 99.48 0.65 -13.71 16 25 H -0.27 -12.43 6.53 99.48 0.65 -11.78 16 26 C 0.08 3.38 5.30 83.26 0.44 3.82 16 27 C -0.03 -0.59 9.59 22.58 0.22 -0.37 16 28 C 0.00 0.01 6.93 39.02 0.27 0.28 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.18 0.74 6.36 -2.91 -0.02 0.72 16 34 H 0.42 5.06 6.68 -92.71 -0.62 4.44 16 35 H 0.08 3.02 5.78 -2.39 -0.01 3.01 16 36 H 0.05 2.10 7.94 -2.39 -0.02 2.09 16 37 H 0.06 1.35 6.63 -2.39 -0.02 1.33 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.40 6.18 9.12 -74.06 -0.68 5.51 16 40 H 0.07 2.03 6.70 -2.38 -0.02 2.01 16 41 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 43 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 44 H 0.04 1.63 3.99 -2.39 -0.01 1.62 16 45 H 0.15 2.61 7.63 -2.91 -0.02 2.59 16 Total: -1.00 -87.20 369.55 -0.41 -87.61 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -0.38 Total: 9.94 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 6.35 Total: 7.08 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.00 Total: -126.31 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -2.09 Total: -36.67 kcal Atomic # 14 Polarization: 56.63 SS G_CDS: 1.72 Total: 58.35 kcal Total: -87.20 -0.41 -87.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.461 kcal (2) G-P(sol) polarization free energy of solvation -87.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds