Wall clock time and date at job start Wed Apr 1 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00243 * 2 1 4 4 O 1.21605 * 120.00130 * 182.42783 * 3 2 1 5 5 C 1.47373 * 119.99616 * 2.15275 * 3 2 1 6 6 C 1.38135 * 126.46699 * 173.81462 * 5 3 2 7 7 N 1.34423 * 108.38734 * 179.86617 * 6 5 3 8 8 H 0.96996 * 125.39072 * 180.13663 * 7 6 5 9 9 C 1.37705 * 109.22414 * 0.40769 * 7 6 5 10 10 C 1.43201 * 125.84626 * 179.73169 * 9 7 6 11 11 N 6.46164 * 51.37737 * 0.09311 * 2 1 3 12 12 C 1.36362 * 108.31359 * 359.74320 * 9 7 6 13 13 C 1.46504 * 119.99833 * 180.02562 * 2 1 3 14 14 C 1.53772 * 113.61690 * 37.48978 * 13 2 1 15 15 C 1.53781 * 87.08469 * 220.02449 * 14 13 2 16 16 N 1.46892 * 113.61721 * 139.98306 * 15 14 13 17 17 C 1.46902 * 111.00033 * 107.50198 * 16 15 14 18 18 C 1.50703 * 109.47419 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99485 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00138 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99696 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99783 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99421 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00447 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99688 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46862 * 59.99873 * 25 23 21 27 27 H 1.48496 * 109.47141 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47019 * 300.00305 * 25 23 21 29 29 C 1.53775 * 87.07917 * 25.43368 * 15 14 13 30 30 H 1.08998 * 109.47217 * 59.77437 * 1 2 3 31 31 H 1.08997 * 109.47235 * 179.77748 * 1 2 3 32 32 H 1.09002 * 109.47053 * 299.77873 * 1 2 3 33 33 H 1.08005 * 125.80098 * 359.97438 * 6 5 3 34 34 H 1.08001 * 126.49209 * 179.97438 * 12 9 7 35 35 H 1.08998 * 112.85032 * 168.80119 * 13 2 1 36 36 H 1.08999 * 113.61994 * 334.56901 * 14 13 2 37 37 H 1.09004 * 113.61625 * 105.47483 * 14 13 2 38 38 H 1.09008 * 113.61047 * 270.88730 * 15 14 13 39 39 H 1.00897 * 111.00526 * 343.55045 * 16 15 14 40 40 H 1.08999 * 109.47404 * 299.99998 * 17 16 15 41 41 H 1.09010 * 109.47147 * 59.99963 * 17 16 15 42 42 H 0.96999 * 119.99957 * 359.97438 * 20 18 17 43 43 H 0.97004 * 120.00155 * 179.97438 * 24 23 21 44 44 H 1.09005 * 113.61432 * 220.02151 * 29 15 14 45 45 H 1.08996 * 113.61492 * 89.12030 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3542 1.1676 -0.0446 5 6 1.4028 2.4430 0.0479 6 6 1.9527 3.7039 0.1735 7 7 0.9541 4.6038 0.1750 8 1 1.0639 5.5646 0.2492 9 6 -0.2498 3.9452 0.0606 10 6 -1.5427 4.5603 0.0314 11 7 -2.5683 5.0483 0.0082 12 6 -0.0003 2.6070 -0.0198 13 6 2.1975 -1.2688 -0.0006 14 6 1.5373 -2.3609 -0.8586 15 6 1.9128 -3.3527 0.2551 16 7 0.8687 -4.3477 0.5336 17 6 1.2583 -5.6733 0.0347 18 6 0.1655 -6.6656 0.3384 19 8 -0.8393 -6.3038 0.9135 20 7 0.3046 -7.9548 -0.0289 21 6 -0.6899 -8.8573 0.2470 22 1 -1.5846 -8.5352 0.7590 23 6 -0.5466 -10.1864 -0.1322 24 7 0.5418 -10.5781 -0.7557 25 14 -1.9013 -11.4163 0.2443 26 1 -3.1582 -10.9870 -0.4201 27 1 -1.5077 -12.7562 -0.2606 28 1 -2.1153 -11.4830 1.7122 29 6 1.8953 -2.1550 1.2194 30 1 -0.3633 0.5173 -0.8879 31 1 -0.3633 -1.0276 -0.0040 32 1 -0.3633 0.5104 0.8920 33 1 3.0060 3.9286 0.2548 34 1 -0.7350 1.8213 -0.1162 35 1 3.2624 -1.1426 -0.1956 36 1 0.4623 -2.2292 -0.9817 37 1 2.0526 -2.5469 -1.8009 38 1 2.9000 -3.7974 0.1290 39 1 -0.0170 -4.0610 0.1447 40 1 1.4158 -5.6242 -1.0427 41 1 2.1807 -5.9886 0.5227 42 1 1.1080 -8.2439 -0.4891 43 1 0.6420 -11.5061 -1.0201 44 1 2.6998 -2.1747 1.9547 45 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725774316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:48 Heat of formation + Delta-G solvation = 28.028562 kcal Electronic energy + Delta-G solvation = -28284.579956 eV Core-core repulsion = 24110.719721 eV Total energy + Delta-G solvation = -4173.860235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57241 -41.10046 -40.07197 -39.12861 -37.58332 -36.31493 -35.84766 -34.26824 -33.20423 -32.22849 -30.76851 -28.60380 -27.99586 -26.57215 -26.20812 -24.97736 -23.55348 -22.57591 -21.23883 -21.16672 -20.30628 -19.81610 -19.43506 -18.04690 -17.55237 -16.93907 -16.84152 -16.72566 -16.52808 -16.30147 -16.01060 -15.71898 -15.62811 -15.36079 -15.08793 -14.76175 -14.31889 -14.25953 -14.15972 -14.09769 -14.07310 -13.85618 -13.48654 -13.32847 -13.29712 -13.21744 -13.01939 -12.76865 -12.40984 -12.28210 -12.11934 -11.89934 -11.83093 -11.55898 -11.47081 -10.87248 -10.29349 -10.18439 -9.98691 -9.62373 -9.30449 -9.15958 -8.43977 -5.92633 0.37813 0.79798 1.23852 1.41783 1.43642 1.54407 2.04195 2.09047 2.19492 2.30035 2.31748 2.56126 2.99274 3.02834 3.23556 3.51353 3.62010 3.81576 3.84973 4.03448 4.07775 4.16976 4.20309 4.32541 4.38043 4.50547 4.54918 4.60999 4.69057 4.71552 4.77699 4.85293 4.89750 4.99514 5.11256 5.15194 5.25374 5.42505 5.43362 5.55635 5.75666 5.96403 6.19612 6.24997 6.40684 6.47893 6.55200 6.63277 7.15345 7.29716 7.59819 8.15007 8.73028 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.001635 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.577370 B =17123.491639 C =18206.529586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.596 5.596 3 C 0.586 3.414 4 O -0.589 6.589 5 C -0.254 4.254 6 C 0.137 3.863 7 N -0.504 5.504 8 H 0.443 0.557 9 C 0.037 3.963 10 C 0.302 3.698 11 N -0.450 5.450 12 C -0.087 4.087 13 C 0.128 3.872 14 C -0.169 4.169 15 C 0.068 3.932 16 N -0.667 5.667 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 C -0.132 4.132 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.214 0.786 34 H 0.186 0.814 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.347 0.653 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.409 29.763 -1.555 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.325 5.325 3 C 0.378 3.622 4 O -0.471 6.471 5 C -0.263 4.263 6 C -0.008 4.008 7 N -0.099 5.099 8 H 0.285 0.715 9 C -0.074 4.074 10 C -0.012 4.012 11 N -0.127 5.127 12 C -0.114 4.114 13 C 0.024 3.976 14 C -0.209 4.209 15 C -0.043 4.043 16 N -0.299 5.299 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.172 4.172 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.167 0.833 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.994 30.609 -0.659 31.020 hybrid contribution 0.051 -0.716 -0.914 1.162 sum 5.045 29.892 -1.573 30.356 Atomic orbital electron populations 1.22584 0.78358 1.04475 1.03063 1.47605 1.07691 1.04970 1.72278 1.17719 0.86064 0.83572 0.74875 1.90746 1.15033 1.87962 1.53398 1.19411 0.93612 0.92954 1.20359 1.22716 0.94860 0.86715 0.96538 1.41633 1.03675 1.10873 1.53675 0.71473 1.15142 0.80323 0.90766 1.21182 1.24394 0.91838 0.92840 0.92161 1.81394 1.11838 1.07511 1.11968 1.22378 0.95752 0.94185 0.99076 1.22340 0.97378 0.81049 0.96877 1.24172 1.02293 0.95591 0.98818 1.22929 0.95755 0.90146 0.95431 1.60011 1.05584 1.00532 1.63755 1.21586 0.96529 0.89038 0.99620 1.20943 0.89683 0.83655 0.83232 1.90487 1.33690 1.79498 1.47339 1.41939 1.19526 1.07242 1.52396 1.19638 0.99778 0.89878 1.37131 0.90287 1.26024 0.99985 0.99047 0.96205 1.69665 1.27716 1.18865 1.39837 0.85000 0.77814 0.76958 0.78634 1.19668 1.19573 1.19812 1.23509 1.02797 0.93880 0.97015 0.89492 0.89898 0.89907 0.76968 0.79683 0.87121 0.88430 0.90238 0.87368 0.83293 0.91369 0.87944 0.76975 0.91343 0.91067 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 7.57 127.77 0.97 1.58 16 2 N -0.60 -9.77 3.08 -823.59 -2.54 -12.31 16 3 C 0.59 10.99 7.67 86.65 0.66 11.65 16 4 O -0.59 -15.09 16.38 -4.05 -0.07 -15.15 16 5 C -0.25 -3.07 6.05 -20.11 -0.12 -3.19 16 6 C 0.14 0.86 11.73 84.27 0.99 1.85 16 7 N -0.50 -1.65 6.02 -186.46 -1.12 -2.77 16 8 H 0.44 -1.35 8.96 -92.71 -0.83 -2.18 16 9 C 0.04 0.31 6.90 39.03 0.27 0.58 16 10 C 0.30 3.81 15.88 88.33 1.40 5.21 16 11 N -0.45 -8.30 18.54 19.00 0.35 -7.95 16 12 C -0.09 -0.79 8.63 22.62 0.20 -0.60 16 13 C 0.13 2.32 4.22 45.52 0.19 2.51 16 14 C -0.17 -2.90 7.07 31.12 0.22 -2.68 16 15 C 0.07 1.43 4.18 45.44 0.19 1.62 16 16 N -0.67 -19.43 6.24 -492.85 -3.08 -22.51 16 17 C 0.06 2.11 6.01 85.56 0.51 2.62 16 18 C 0.44 20.36 7.82 87.66 0.69 21.05 16 19 O -0.62 -33.90 15.78 -3.08 -0.05 -33.95 16 20 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 25 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C -0.13 -2.61 7.41 31.12 0.23 -2.38 16 30 H 0.09 0.65 6.32 -2.39 -0.02 0.63 16 31 H 0.08 0.95 5.66 -2.39 -0.01 0.93 16 32 H 0.08 0.71 6.64 -2.39 -0.02 0.69 16 33 H 0.21 0.46 8.06 -2.91 -0.02 0.43 16 34 H 0.19 1.18 4.23 -2.91 -0.01 1.16 16 35 H 0.11 2.28 7.22 -2.39 -0.02 2.27 16 36 H 0.10 1.58 5.72 -2.39 -0.01 1.57 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 2.10 7.87 -2.38 -0.02 2.09 16 39 H 0.35 10.39 7.89 -89.70 -0.71 9.68 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 3.05 8.13 -2.38 -0.02 3.03 16 42 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 43 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.09 1.79 7.51 -2.39 -0.02 1.78 16 Total: -1.00 -77.97 383.58 0.70 -77.28 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -1.17 Total: 30.91 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 7.68 Total: 21.53 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -7.73 Total: -125.34 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.11 Total: -49.10 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -77.97 0.70 -77.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725774316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.304 kcal (2) G-P(sol) polarization free energy of solvation -77.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds