Wall clock time and date at job start Wed Apr 1 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35452 * 124.79315 * 2 1 4 4 C 1.36382 * 109.77380 * 180.02562 * 3 2 1 5 5 C 1.46903 * 126.76372 * 179.97438 * 4 3 2 6 6 O 1.21676 * 119.99856 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99989 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99898 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46899 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.47678 * 295.00302 * 9 8 7 11 11 N 1.46501 * 109.47099 * 55.00253 * 9 8 7 12 12 C 1.36939 * 120.00453 * 204.99583 * 11 9 8 13 13 H 1.08003 * 119.99235 * 0.02562 * 12 11 9 14 14 C 1.38803 * 120.00348 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99850 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00114 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47248 * 60.00016 * 16 14 12 18 18 H 1.48497 * 109.47126 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46837 * 299.99730 * 16 14 12 20 20 C 1.52999 * 109.47101 * 175.00105 * 9 8 7 21 21 C 1.53002 * 117.50292 * 248.74942 * 20 9 8 22 22 C 1.52997 * 117.49832 * 180.08706 * 20 9 8 23 23 C 1.47448 * 106.47412 * 359.97438 * 4 3 2 24 24 C 1.39287 * 133.98036 * 180.02562 * 23 4 3 25 25 C 1.37958 * 119.64829 * 179.20361 * 24 23 4 26 26 F 1.35099 * 119.87364 * 180.25376 * 25 24 23 27 27 C 1.38948 * 120.24632 * 0.69840 * 25 24 23 28 28 C 1.37749 * 120.60822 * 359.53068 * 27 25 24 29 29 C 1.38055 * 124.79518 * 179.70483 * 2 1 3 30 30 H 1.09002 * 109.47391 * 90.02040 * 1 2 3 31 31 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 33 33 H 1.07998 * 125.11193 * 0.04030 * 3 2 1 34 34 H 0.97000 * 120.00105 * 0.02562 * 7 5 4 35 35 H 1.08990 * 109.47338 * 299.99990 * 8 7 5 36 36 H 1.09001 * 109.46659 * 60.00515 * 8 7 5 37 37 H 0.97000 * 119.99680 * 24.99971 * 11 9 8 38 38 H 0.97004 * 120.00032 * 180.02562 * 15 14 12 39 39 H 1.09006 * 115.54972 * 34.41866 * 20 9 8 40 40 H 1.08998 * 117.49337 * 359.97438 * 21 20 9 41 41 H 1.08993 * 117.50152 * 145.01682 * 21 20 9 42 42 H 1.09000 * 117.50086 * 214.98161 * 22 20 9 43 43 H 1.08994 * 117.50399 * 359.97438 * 22 20 9 44 44 H 1.08005 * 120.17728 * 359.96147 * 24 23 4 45 45 H 1.08000 * 119.69221 * 179.56036 * 27 25 24 46 46 H 1.08001 * 120.02044 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7589 -0.0006 5 6 4.7093 1.6677 -0.0013 6 8 5.8392 1.2162 -0.0022 7 7 4.5167 3.0016 -0.0009 8 6 5.6677 3.9079 -0.0011 9 6 5.1760 5.3568 -0.0012 10 1 4.6478 5.5612 -0.9326 11 7 4.2689 5.5647 1.1303 12 6 3.3251 6.5555 1.0782 13 1 3.2492 7.1834 0.2027 14 6 2.4661 6.7529 2.1505 15 7 2.5590 5.9880 3.2175 16 14 1.1782 8.1040 2.0791 17 1 0.2685 7.8607 0.9308 18 1 0.3933 8.1068 3.3397 19 1 1.8485 9.4183 1.9098 20 6 6.3729 6.3016 0.1243 21 6 6.5176 7.0892 1.4280 22 6 6.0874 7.8045 0.1448 23 6 3.5926 -0.7151 -0.0003 24 6 4.6191 -1.6565 -0.0002 25 6 4.3117 -3.0013 0.0167 26 9 5.3038 -3.9184 0.0221 27 6 2.9856 -3.4162 0.0189 28 6 1.9622 -2.4942 0.0140 29 6 2.2528 -1.1337 0.0058 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 1.8668 2.1266 0.0006 34 1 3.6160 3.3616 0.0002 35 1 6.2713 3.7288 0.8886 36 1 6.2707 3.7292 -0.8914 37 1 4.3370 5.0006 1.9164 38 1 1.9584 6.1256 3.9668 39 1 7.2874 5.9697 -0.3673 40 1 5.7598 6.9346 2.1961 41 1 7.5271 7.2758 1.7939 42 1 6.8142 8.4615 -0.3329 43 1 5.0470 8.1203 0.0685 44 1 5.6503 -1.3354 -0.0009 45 1 2.7552 -4.4713 0.0250 46 1 0.9348 -2.8272 0.0153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731395701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:38 Heat of formation + Delta-G solvation = 21.427130 kcal Electronic energy + Delta-G solvation = -29619.695742 eV Core-core repulsion = 25425.629286 eV Total energy + Delta-G solvation = -4194.066456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.79673 -41.61995 -38.96854 -37.51952 -37.01639 -34.38667 -33.28773 -33.08039 -30.93123 -30.23542 -29.28547 -28.10570 -26.65004 -23.90088 -23.24226 -23.03819 -21.84411 -21.48500 -21.27673 -19.72358 -18.97220 -17.89752 -17.42376 -17.19654 -16.50206 -15.85195 -15.74548 -15.50141 -15.34655 -15.15203 -15.05724 -14.67879 -14.40717 -14.20462 -13.67046 -13.54028 -13.35496 -13.01942 -12.95525 -12.88532 -12.81071 -12.70455 -12.48055 -12.01652 -11.30166 -11.18902 -11.17713 -11.07883 -10.91759 -10.87946 -10.53707 -10.18997 -9.79003 -9.74123 -9.62984 -9.43071 -9.16413 -9.01512 -8.58411 -8.33305 -7.78908 -7.10962 -5.88110 -3.18302 0.78740 1.23953 1.98798 2.48689 3.33385 3.39792 3.41007 3.42891 3.63690 3.89157 4.20214 4.38371 4.44329 4.45807 4.62838 4.65776 4.80672 4.89617 5.07025 5.14198 5.22364 5.33886 5.38355 5.42837 5.55547 5.58551 5.63934 5.75239 5.80518 5.85418 6.00332 6.05102 6.08194 6.11922 6.13279 6.38422 6.46079 6.48638 6.55450 6.65829 6.76774 6.91133 6.93658 6.96846 7.03137 7.27390 7.60626 8.04348 8.28978 8.70115 9.41228 9.95942 10.32549 11.32960 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002920 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.388578 B = 9587.453394 C =11374.527882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.471 5.471 3 C 0.122 3.878 4 C -0.223 4.223 5 C 0.586 3.414 6 O -0.555 6.555 7 N -0.711 5.711 8 C 0.122 3.878 9 C 0.192 3.808 10 H 0.057 0.943 11 N -0.717 5.717 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.007 4.007 15 N -0.928 5.928 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.286 1.286 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.176 4.176 23 C -0.036 4.036 24 C -0.095 4.095 25 C 0.071 3.929 26 F -0.143 7.143 27 C -0.136 4.136 28 C -0.096 4.096 29 C 0.075 3.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -13.575 -7.862 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.152 5.152 3 C -0.010 4.010 4 C -0.233 4.233 5 C 0.374 3.626 6 O -0.435 6.435 7 N -0.362 5.362 8 C -0.003 4.003 9 C 0.081 3.919 10 H 0.075 0.925 11 N -0.359 5.359 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.213 1.213 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.213 4.213 23 C -0.041 4.041 24 C -0.115 4.115 25 C 0.051 3.949 26 F -0.121 7.121 27 C -0.156 4.156 28 C -0.116 4.116 29 C -0.029 4.029 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.202 0.798 34 H 0.242 0.758 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.164 0.836 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.492 -13.772 -7.887 16.250 hybrid contribution -1.022 0.843 0.380 1.378 sum -4.514 -12.929 -7.508 15.618 Atomic orbital electron populations 1.22114 0.76267 1.04995 1.03547 1.43599 1.06519 1.04138 1.60938 1.22326 0.89796 0.91832 0.96999 1.20055 0.92402 0.91914 1.18939 1.17126 0.87543 0.81688 0.76234 1.90738 1.24098 1.76974 1.51677 1.45772 1.11047 1.04964 1.74416 1.21555 0.87874 0.89269 1.01591 1.20001 0.89593 0.89449 0.92835 0.92537 1.42485 1.37005 1.39827 1.16622 1.19125 1.08300 1.08859 1.00767 0.91144 1.24694 0.99868 0.99317 0.96524 1.69654 1.40653 1.40804 1.06418 0.86370 0.81654 0.82147 0.76589 1.21405 1.21839 1.21252 1.23066 1.00197 0.93897 1.02717 1.22909 1.01143 1.03455 0.92482 1.22845 1.02310 0.93777 1.02360 1.18436 0.91210 0.91808 1.02661 1.20594 1.00786 0.89804 1.00269 1.17352 0.84887 0.86056 1.06618 1.91477 1.60614 1.65677 1.94357 1.20708 0.90490 1.00198 1.04179 1.19764 0.99338 0.88496 1.03990 1.18261 0.89869 0.88336 1.06454 0.90672 0.88982 0.89758 0.79825 0.75804 0.91643 0.91819 0.77870 0.93430 0.89589 0.86366 0.91297 0.91057 0.87992 0.83600 0.84496 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.99 59.85 0.66 1.12 16 2 N -0.47 -5.02 3.15 -121.58 -0.38 -5.41 16 3 C 0.12 1.50 10.76 -16.62 -0.18 1.32 16 4 C -0.22 -3.40 6.27 -103.31 -0.65 -4.05 16 5 C 0.59 10.27 7.79 -12.76 -0.10 10.17 16 6 O -0.56 -11.33 16.16 5.21 0.08 -11.25 16 7 N -0.71 -11.66 5.38 -61.55 -0.33 -11.99 16 8 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 9 C 0.19 3.42 2.86 -67.93 -0.19 3.23 16 10 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 11 N -0.72 -15.35 3.08 -53.42 -0.16 -15.51 16 12 C -0.24 -5.73 8.15 -15.06 -0.12 -5.85 16 13 H 0.07 1.67 6.91 -52.48 -0.36 1.30 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -25.35 13.06 55.49 0.72 -24.62 16 16 Si 0.90 20.56 29.55 -169.99 -5.02 15.53 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.18 -3.04 5.70 -90.62 -0.52 -3.55 16 21 C -0.16 -3.01 9.74 -26.69 -0.26 -3.27 16 22 C -0.18 -3.09 9.87 -26.69 -0.26 -3.35 16 23 C -0.04 -0.54 6.26 -104.96 -0.66 -1.20 16 24 C -0.10 -1.41 9.83 -39.29 -0.39 -1.80 16 25 C 0.07 0.93 7.29 -39.42 -0.29 0.64 16 26 F -0.14 -1.91 17.26 2.25 0.04 -1.87 16 27 C -0.14 -1.42 9.99 -39.50 -0.39 -1.81 16 28 C -0.10 -0.95 9.91 -39.43 -0.39 -1.34 16 29 C 0.07 0.92 6.79 -83.93 -0.57 0.35 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.52 8.13 -51.93 -0.42 0.09 16 32 H 0.08 0.41 8.01 -51.93 -0.42 0.00 16 33 H 0.18 1.89 7.38 -52.49 -0.39 1.50 16 34 H 0.41 6.40 7.02 -40.82 -0.29 6.11 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.39 9.19 7.80 -40.82 -0.32 8.87 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.12 2.62 6.68 -51.93 -0.35 2.27 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 1.99 6.22 -51.93 -0.32 1.67 16 44 H 0.15 2.32 7.45 -52.48 -0.39 1.92 16 45 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.13 0.87 8.00 -52.49 -0.42 0.45 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -30.12 388.74 -9.81 -39.93 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -6.19 Total: 17.00 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.43 Total: -7.67 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.15 Total: -57.53 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.12 -9.81 -39.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731395701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.358 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds