Wall clock time and date at job start Wed Apr 1 2020 03:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35452 * 124.79315 * 2 1 4 4 C 1.36382 * 109.77380 * 180.02562 * 3 2 1 5 5 C 1.46903 * 126.76372 * 179.97438 * 4 3 2 6 6 O 1.21676 * 119.99856 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99989 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99898 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46899 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.47678 * 295.00302 * 9 8 7 11 11 N 1.46501 * 109.47099 * 55.00253 * 9 8 7 12 12 C 1.36939 * 120.00453 * 204.99583 * 11 9 8 13 13 H 1.08003 * 119.99235 * 0.02562 * 12 11 9 14 14 C 1.38803 * 120.00348 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99850 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00114 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47248 * 60.00016 * 16 14 12 18 18 H 1.48497 * 109.47126 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46837 * 299.99730 * 16 14 12 20 20 C 1.52999 * 109.47101 * 175.00105 * 9 8 7 21 21 C 1.53002 * 117.50292 * 248.74942 * 20 9 8 22 22 C 1.52997 * 117.49832 * 180.08706 * 20 9 8 23 23 C 1.47448 * 106.47412 * 359.97438 * 4 3 2 24 24 C 1.39287 * 133.98036 * 180.02562 * 23 4 3 25 25 C 1.37958 * 119.64829 * 179.20361 * 24 23 4 26 26 F 1.35099 * 119.87364 * 180.25376 * 25 24 23 27 27 C 1.38948 * 120.24632 * 0.69840 * 25 24 23 28 28 C 1.37749 * 120.60822 * 359.53068 * 27 25 24 29 29 C 1.38055 * 124.79518 * 179.70483 * 2 1 3 30 30 H 1.09002 * 109.47391 * 90.02040 * 1 2 3 31 31 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 33 33 H 1.07998 * 125.11193 * 0.04030 * 3 2 1 34 34 H 0.97000 * 120.00105 * 0.02562 * 7 5 4 35 35 H 1.08990 * 109.47338 * 299.99990 * 8 7 5 36 36 H 1.09001 * 109.46659 * 60.00515 * 8 7 5 37 37 H 0.97000 * 119.99680 * 24.99971 * 11 9 8 38 38 H 0.97004 * 120.00032 * 180.02562 * 15 14 12 39 39 H 1.09006 * 115.54972 * 34.41866 * 20 9 8 40 40 H 1.08998 * 117.49337 * 359.97438 * 21 20 9 41 41 H 1.08993 * 117.50152 * 145.01682 * 21 20 9 42 42 H 1.09000 * 117.50086 * 214.98161 * 22 20 9 43 43 H 1.08994 * 117.50399 * 359.97438 * 22 20 9 44 44 H 1.08005 * 120.17728 * 359.96147 * 24 23 4 45 45 H 1.08000 * 119.69221 * 179.56036 * 27 25 24 46 46 H 1.08001 * 120.02044 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7589 -0.0006 5 6 4.7093 1.6677 -0.0013 6 8 5.8392 1.2162 -0.0022 7 7 4.5167 3.0016 -0.0009 8 6 5.6677 3.9079 -0.0011 9 6 5.1760 5.3568 -0.0012 10 1 4.6478 5.5612 -0.9326 11 7 4.2689 5.5647 1.1303 12 6 3.3251 6.5555 1.0782 13 1 3.2492 7.1834 0.2027 14 6 2.4661 6.7529 2.1505 15 7 2.5590 5.9880 3.2175 16 14 1.1782 8.1040 2.0791 17 1 0.2685 7.8607 0.9308 18 1 0.3933 8.1068 3.3397 19 1 1.8485 9.4183 1.9098 20 6 6.3729 6.3016 0.1243 21 6 6.5176 7.0892 1.4280 22 6 6.0874 7.8045 0.1448 23 6 3.5926 -0.7151 -0.0003 24 6 4.6191 -1.6565 -0.0002 25 6 4.3117 -3.0013 0.0167 26 9 5.3038 -3.9184 0.0221 27 6 2.9856 -3.4162 0.0189 28 6 1.9622 -2.4942 0.0140 29 6 2.2528 -1.1337 0.0058 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 1.8668 2.1266 0.0006 34 1 3.6160 3.3616 0.0002 35 1 6.2713 3.7288 0.8886 36 1 6.2707 3.7292 -0.8914 37 1 4.3370 5.0006 1.9164 38 1 1.9584 6.1256 3.9668 39 1 7.2874 5.9697 -0.3673 40 1 5.7598 6.9346 2.1961 41 1 7.5271 7.2758 1.7939 42 1 6.8142 8.4615 -0.3329 43 1 5.0470 8.1203 0.0685 44 1 5.6503 -1.3354 -0.0009 45 1 2.7552 -4.4713 0.0250 46 1 0.9348 -2.8272 0.0153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731395701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:36 Heat of formation + Delta-G solvation = 4.794536 kcal Electronic energy + Delta-G solvation = -29620.416986 eV Core-core repulsion = 25425.629286 eV Total energy + Delta-G solvation = -4194.787700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -49.83463 -42.56045 -40.34819 -39.02004 -37.91775 -35.83628 -35.01420 -34.02954 -32.56260 -31.13504 -30.45773 -29.45986 -27.54757 -25.57294 -24.53266 -24.11698 -23.15858 -22.75146 -22.32290 -21.05078 -20.33446 -19.26512 -18.73059 -18.40125 -17.50307 -16.95225 -16.84667 -16.77630 -16.54274 -16.30883 -16.26613 -16.04498 -15.84413 -15.34139 -15.16729 -14.98676 -14.50850 -14.27750 -14.13298 -13.81892 -13.74466 -13.67112 -13.50034 -13.18786 -12.90268 -12.80444 -12.60480 -12.57432 -12.13213 -12.05630 -12.03574 -11.94265 -11.55294 -11.06936 -10.99203 -10.76799 -10.76561 -10.59183 -9.98358 -9.28277 -8.95900 -8.75786 -7.83927 -5.11972 -0.17750 0.29273 0.92041 1.51969 1.55071 1.58967 1.67423 2.32015 2.37990 2.61668 2.74679 3.15921 3.23496 3.50288 3.53849 3.67308 3.77824 3.91470 3.99530 4.02875 4.20902 4.28860 4.32695 4.36203 4.43592 4.49988 4.50486 4.54227 4.62059 4.67774 4.74810 4.77891 4.93835 4.98359 4.99028 5.15363 5.18531 5.20903 5.28979 5.43726 5.45829 5.58544 5.61868 5.69623 5.70114 5.98009 6.14147 6.34956 6.71222 7.36203 7.43839 8.14084 8.40851 9.37874 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002920 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.388578 B = 9587.453394 C =11374.527882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C 0.144 3.856 4 C -0.269 4.269 5 C 0.583 3.417 6 O -0.596 6.596 7 N -0.706 5.706 8 C 0.130 3.870 9 C 0.195 3.805 10 H 0.064 0.936 11 N -0.719 5.719 12 C -0.218 4.218 13 H 0.076 0.924 14 C -0.063 4.063 15 N -0.963 5.963 16 Si 0.956 3.044 17 H -0.276 1.276 18 H -0.305 1.305 19 H -0.288 1.288 20 C -0.170 4.170 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.065 4.065 24 C -0.129 4.129 25 C 0.065 3.935 26 F -0.149 7.149 27 C -0.131 4.131 28 C -0.075 4.075 29 C 0.068 3.932 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.203 0.797 34 H 0.410 0.590 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.374 0.626 38 H 0.246 0.754 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.172 0.828 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -14.223 -9.403 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.140 5.140 3 C 0.009 3.991 4 C -0.279 4.279 5 C 0.373 3.627 6 O -0.479 6.479 7 N -0.356 5.356 8 C 0.005 3.995 9 C 0.086 3.914 10 H 0.082 0.918 11 N -0.359 5.359 12 C -0.350 4.350 13 H 0.094 0.906 14 C -0.255 4.255 15 N -0.614 5.614 16 Si 0.787 3.213 17 H -0.202 1.202 18 H -0.232 1.232 19 H -0.215 1.215 20 C -0.191 4.191 21 C -0.212 4.212 22 C -0.205 4.205 23 C -0.070 4.070 24 C -0.149 4.149 25 C 0.045 3.955 26 F -0.128 7.128 27 C -0.151 4.151 28 C -0.095 4.095 29 C -0.036 4.036 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.220 0.780 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.206 0.794 38 H 0.055 0.945 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.134 0.866 45 H 0.189 0.811 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.841 -14.416 -9.480 18.215 hybrid contribution -0.301 1.006 0.808 1.325 sum -6.142 -13.410 -8.673 17.110 Atomic orbital electron populations 1.22527 0.73156 1.06672 1.05407 1.43898 1.08147 1.03036 1.58887 1.22528 0.88972 0.93069 0.94523 1.19959 0.92904 0.92098 1.22929 1.17528 0.87860 0.82019 0.75284 1.90700 1.25841 1.77579 1.53786 1.45692 1.11010 1.04731 1.74197 1.21434 0.88020 0.88690 1.01315 1.20100 0.89458 0.90197 0.91630 0.91843 1.42529 1.37309 1.39041 1.17059 1.19376 1.07331 1.08142 1.00139 0.90578 1.25261 1.02140 1.01429 0.96705 1.69803 1.41752 1.42762 1.07056 0.85486 0.79805 0.79943 0.76100 1.20219 1.23212 1.21514 1.23067 1.00629 0.93569 1.01820 1.22770 1.01089 1.05163 0.92136 1.22837 1.01836 0.94330 1.01489 1.18660 0.92812 0.91742 1.03737 1.20482 0.99773 0.91206 1.03400 1.17604 0.86098 0.85212 1.06545 1.91454 1.61275 1.65658 1.94405 1.21085 0.88927 1.02157 1.02932 1.20259 1.01315 0.86982 1.00906 1.18517 0.88872 0.89732 1.06522 0.88648 0.88067 0.87494 0.78003 0.75373 0.93440 0.90542 0.79375 0.94470 0.86957 0.90344 0.89336 0.88166 0.90116 0.86551 0.81060 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.99 127.77 1.40 1.93 16 2 N -0.46 -8.66 3.15 -538.57 -1.69 -10.36 16 3 C 0.14 3.39 10.76 83.70 0.90 4.29 16 4 C -0.27 -8.48 6.27 -19.01 -0.12 -8.60 16 5 C 0.58 21.53 7.79 86.51 0.67 22.21 16 6 O -0.60 -26.13 16.16 -4.27 -0.07 -26.19 16 7 N -0.71 -23.76 5.38 -466.86 -2.51 -26.27 16 8 C 0.13 4.42 5.22 86.38 0.45 4.87 16 9 C 0.20 6.86 2.86 44.99 0.13 6.99 16 10 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 11 N -0.72 -31.03 3.08 -322.94 -0.99 -32.02 16 12 C -0.22 -10.39 8.15 84.03 0.69 -9.70 16 13 H 0.08 3.52 6.91 -2.91 -0.02 3.50 16 14 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 15 N -0.96 -53.80 13.06 21.65 0.28 -53.51 16 16 Si 0.96 42.39 29.55 68.60 2.03 44.42 16 17 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.31 -14.09 7.11 99.48 0.71 -13.39 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 C -0.17 -5.56 5.70 -10.79 -0.06 -5.63 16 21 C -0.17 -6.35 9.74 30.62 0.30 -6.05 16 22 C -0.17 -5.59 9.87 30.62 0.30 -5.29 16 23 C -0.06 -1.99 6.26 -20.08 -0.13 -2.12 16 24 C -0.13 -4.10 9.83 22.46 0.22 -3.88 16 25 C 0.07 1.72 7.29 22.37 0.16 1.88 16 26 F -0.15 -4.08 17.26 44.97 0.78 -3.30 16 27 C -0.13 -2.39 9.99 22.32 0.22 -2.17 16 28 C -0.07 -1.21 9.91 22.37 0.22 -0.98 16 29 C 0.07 1.54 6.79 38.89 0.26 1.80 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 32 H 0.11 0.49 8.01 -2.38 -0.02 0.47 16 33 H 0.20 3.86 7.38 -2.91 -0.02 3.83 16 34 H 0.41 13.02 7.02 -92.71 -0.65 12.37 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.37 18.27 7.80 -92.71 -0.72 17.55 16 38 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.11 3.16 8.11 -2.38 -0.02 3.15 16 40 H 0.08 3.55 6.68 -2.39 -0.02 3.53 16 41 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.08 3.05 6.22 -2.39 -0.01 3.04 16 44 H 0.12 4.23 7.45 -2.91 -0.02 4.21 16 45 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 46 H 0.18 1.25 8.00 -2.91 -0.02 1.22 16 Total: -1.00 -69.46 388.74 3.58 -65.89 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.34 Total: 44.56 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 6.10 Total: -3.21 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.91 Total: -122.16 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -69.46 3.58 -65.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731395701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.680 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds