Wall clock time and date at job start Wed Apr 1 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 120.00172 * 2 1 4 4 C 1.52993 * 109.47148 * 269.99952 * 3 2 1 5 5 H 1.09000 * 109.47300 * 305.00006 * 4 3 2 6 6 O 1.42898 * 109.47196 * 64.99940 * 4 3 2 7 7 C 1.53002 * 109.47005 * 184.99918 * 4 3 2 8 8 N 1.46501 * 109.46997 * 180.02562 * 7 4 3 9 9 C 1.36932 * 120.00055 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99700 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31612 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47290 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46968 * 120.00120 * 13 11 9 16 16 H 1.48499 * 109.46823 * 239.99903 * 13 11 9 17 17 C 1.34777 * 120.00051 * 180.02562 * 2 1 3 18 18 O 1.21548 * 120.00098 * 184.86704 * 17 2 1 19 19 C 1.47856 * 120.00141 * 4.86834 * 17 2 1 20 20 C 1.39622 * 120.11138 * 320.77781 * 19 17 2 21 21 C 1.37974 * 119.98583 * 180.02562 * 20 19 17 22 22 C 1.38265 * 120.21620 * 359.97438 * 21 20 19 23 23 C 1.38905 * 120.22504 * 359.97438 * 22 21 20 24 24 N 1.40274 * 119.99227 * 179.97438 * 23 22 21 25 25 C 1.36117 * 125.93713 * 4.71824 * 24 23 22 26 26 C 1.35377 * 106.04594 * 179.90095 * 25 24 23 27 27 N 1.33780 * 106.53777 * 0.34778 * 26 25 24 28 28 N 1.28599 * 109.05894 * 359.77460 * 27 26 25 29 29 C 1.38579 * 120.01330 * 0.26957 * 23 22 21 30 30 H 1.09002 * 109.47090 * 265.52505 * 1 2 3 31 31 H 1.08999 * 109.46646 * 25.52455 * 1 2 3 32 32 H 1.08997 * 109.46943 * 145.52229 * 1 2 3 33 33 H 1.09003 * 109.46589 * 30.00397 * 3 2 1 34 34 H 1.09000 * 109.46827 * 149.99622 * 3 2 1 35 35 H 0.96701 * 114.00274 * 59.99502 * 6 4 3 36 36 H 1.09000 * 109.46682 * 299.99948 * 7 4 3 37 37 H 1.08999 * 109.47147 * 60.00239 * 7 4 3 38 38 H 0.97003 * 120.00164 * 359.97438 * 8 7 4 39 39 H 0.97005 * 119.99467 * 180.02562 * 12 11 9 40 40 H 1.08005 * 120.00560 * 359.97400 * 20 19 17 41 41 H 1.08001 * 119.89350 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.88703 * 180.02562 * 22 21 20 43 43 H 1.07992 * 126.97889 * 0.03242 * 25 24 23 44 44 H 1.08004 * 126.73338 * 180.10486 * 26 25 24 45 45 H 1.08007 * 120.10503 * 179.74817 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7104 -1.4424 5 1 2.9643 0.9131 -1.9815 6 8 1.2062 1.9936 -2.0813 7 6 3.3239 2.9681 -1.4442 8 7 3.5676 3.3914 -2.8254 9 6 4.3276 4.5022 -3.0771 10 1 4.7470 5.0666 -2.2574 11 6 4.5590 4.9030 -4.3859 12 7 4.0474 4.2155 -5.3848 13 14 5.5964 6.4181 -4.7292 14 1 6.0513 7.0081 -3.4446 15 1 6.7779 6.0350 -5.5432 16 1 4.7852 7.4153 -5.4728 17 6 2.1389 -1.1672 -0.0005 18 8 3.3511 -1.1691 0.0888 19 6 1.4037 -2.4453 -0.1098 20 6 0.1903 -2.6149 0.5599 21 6 -0.4933 -3.8089 0.4566 22 6 0.0187 -4.8399 -0.3092 23 6 1.2245 -4.6805 -0.9801 24 7 1.7398 -5.7299 -1.7552 25 6 1.1208 -6.9158 -2.0069 26 6 1.9688 -7.6214 -2.7915 27 7 3.0486 -6.8527 -2.9729 28 7 2.8825 -5.7412 -2.3478 29 6 1.9216 -3.4870 -0.8788 30 1 -0.3633 -0.0802 1.0245 31 1 -0.3632 0.9274 -0.4428 32 1 -0.3633 -0.8471 -0.5817 33 1 1.6085 2.0284 0.5139 34 1 3.1499 1.1384 0.5139 35 1 0.6956 2.6950 -1.6542 36 1 2.8121 3.7653 -0.9052 37 1 4.2747 2.7521 -0.9569 38 1 3.1906 2.8847 -3.5617 39 1 4.2094 4.4954 -6.2994 40 1 -0.2125 -1.8119 1.1594 41 1 -1.4315 -3.9386 0.9756 42 1 -0.5210 -5.7721 -0.3867 43 1 0.1494 -7.2292 -1.6542 44 1 1.8073 -8.6124 -3.1894 45 1 2.8613 -3.3629 -1.3965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755795705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:48 Heat of formation + Delta-G solvation = 82.594408 kcal Electronic energy + Delta-G solvation = -29189.330511 eV Core-core repulsion = 25017.836429 eV Total energy + Delta-G solvation = -4171.494083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.79080 -40.84228 -39.12379 -37.48987 -35.61012 -34.88732 -33.99963 -32.28281 -31.48456 -31.16309 -30.63282 -29.30396 -27.10993 -25.94214 -24.73713 -24.26158 -22.99764 -22.14339 -21.79259 -21.22567 -20.18988 -18.73989 -17.23084 -17.13759 -16.90287 -16.79887 -16.69532 -16.22951 -15.62135 -15.36593 -15.22713 -15.05526 -14.59104 -14.43742 -14.30856 -13.83129 -13.76173 -13.45881 -13.30410 -12.94726 -12.90510 -12.47819 -12.43004 -12.17357 -12.01301 -11.84923 -11.59067 -11.38430 -11.31934 -10.92464 -10.81972 -10.72169 -10.25616 -10.10729 -9.86418 -9.82609 -9.68796 -9.64272 -9.13335 -8.87889 -8.63366 -6.89686 -5.72309 -3.01904 0.01502 0.44957 1.47062 1.77871 2.19102 2.43762 2.70531 3.19764 3.45666 3.50656 3.53454 3.84082 3.93628 4.12856 4.30906 4.43588 4.45020 4.56260 4.66054 4.70257 4.74985 4.78936 4.90101 4.95469 5.04546 5.12760 5.18215 5.26802 5.49299 5.55556 5.57222 5.59126 5.64125 5.67152 5.74030 5.77249 5.92884 5.98373 6.21065 6.34663 6.36193 6.54381 6.73201 7.10123 7.71572 7.90258 7.99699 8.07845 8.45700 9.57225 10.14993 10.50673 11.50122 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.002248 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.053292 B =12450.119042 C =13960.762120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.598 5.598 3 C 0.086 3.914 4 C 0.085 3.915 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.555 3.445 18 O -0.521 6.521 19 C -0.101 4.101 20 C -0.086 4.086 21 C -0.104 4.104 22 C -0.099 4.099 23 C 0.115 3.885 24 N -0.243 5.243 25 C -0.051 4.051 26 C -0.044 4.044 27 N -0.261 5.261 28 N -0.071 5.071 29 C -0.047 4.047 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.367 0.633 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.195 0.805 44 H 0.196 0.804 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.780 -21.932 16.331 32.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.577 5.577 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.342 3.658 18 O -0.397 6.397 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.119 4.119 23 C 0.024 3.976 24 N -0.030 5.030 25 C -0.199 4.199 26 C -0.199 4.199 27 N -0.127 5.127 28 N -0.050 5.050 29 C -0.067 4.067 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.213 0.787 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.211 0.789 44 H 0.213 0.787 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.491 -21.512 15.671 30.794 hybrid contribution -0.854 0.470 0.083 0.978 sum -16.344 -21.042 15.753 30.953 Atomic orbital electron populations 1.22183 0.79346 1.04612 1.00864 1.47582 1.07185 1.05620 1.72648 1.22319 0.98622 0.83999 0.98784 1.22560 0.85255 0.98310 0.91367 0.88215 1.86632 1.32283 1.58955 1.57516 1.21209 0.96380 0.92795 0.89817 1.42245 1.61813 1.32208 1.00758 1.19261 1.23690 1.02555 0.91839 0.91197 1.24771 1.01183 0.99423 0.95593 1.69696 1.49070 1.40759 0.98218 0.86112 0.79733 0.82544 0.77757 1.20571 1.21817 1.21863 1.18170 0.87071 0.83361 0.77151 1.90856 1.13260 1.86939 1.48658 1.19800 0.95910 0.94664 1.00137 1.21888 0.92824 0.98297 0.97487 1.20980 1.00608 0.92055 0.98631 1.21056 0.93523 1.00760 0.96606 1.17467 0.95744 0.87130 0.97254 1.44786 1.13137 1.12104 1.33013 1.23834 1.03094 0.87104 1.05876 1.23712 0.91570 1.02509 1.02115 1.75188 1.22589 0.98390 1.16526 1.78512 1.00416 1.17386 1.08649 1.21008 0.99814 0.89401 0.96493 0.92473 0.89851 0.90656 0.89734 0.88443 0.78718 0.96238 0.95450 0.77661 0.93543 0.83493 0.83716 0.84316 0.78852 0.78699 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.66 59.85 0.52 1.04 16 2 N -0.60 -6.71 2.84 -182.69 -0.52 -7.22 16 3 C 0.09 1.06 5.08 -4.04 -0.02 1.04 16 4 C 0.09 1.41 3.30 -26.73 -0.09 1.32 16 5 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 6 O -0.55 -8.84 11.99 -35.23 -0.42 -9.26 16 7 C 0.13 2.54 5.92 -4.04 -0.02 2.52 16 8 N -0.73 -19.08 5.49 -59.91 -0.33 -19.41 16 9 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 13 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 C 0.56 7.42 7.35 -12.32 -0.09 7.33 16 18 O -0.52 -9.14 16.46 5.32 0.09 -9.05 16 19 C -0.10 -1.06 5.23 -104.99 -0.55 -1.61 16 20 C -0.09 -0.55 7.56 -39.16 -0.30 -0.84 16 21 C -0.10 -0.47 10.02 -39.67 -0.40 -0.86 16 22 C -0.10 -0.55 9.45 -39.32 -0.37 -0.92 16 23 C 0.12 1.08 6.67 -83.62 -0.56 0.53 16 24 N -0.24 -2.58 3.56 -10.50 -0.04 -2.61 16 25 C -0.05 -0.37 10.91 -16.67 -0.18 -0.55 16 26 C -0.04 -0.37 12.05 -17.72 -0.21 -0.58 16 27 N -0.26 -3.43 12.39 30.24 0.37 -3.06 16 28 N -0.07 -0.99 12.42 60.35 0.75 -0.24 16 29 C -0.05 -0.54 9.20 -39.00 -0.36 -0.90 16 30 H 0.06 0.25 6.89 -51.93 -0.36 -0.11 16 31 H 0.08 0.58 7.20 -51.93 -0.37 0.21 16 32 H 0.07 0.51 5.81 -51.93 -0.30 0.20 16 33 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.10 1.33 7.36 -51.93 -0.38 0.95 16 35 H 0.37 4.54 9.04 45.56 0.41 4.95 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.39 11.07 7.54 -40.82 -0.31 10.76 16 39 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 40 H 0.15 0.61 5.30 -52.48 -0.28 0.33 16 41 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.33 6.77 -52.49 -0.36 -0.02 16 43 H 0.19 0.45 7.12 -52.49 -0.37 0.07 16 44 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.15 2.12 7.69 -52.48 -0.40 1.72 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -39.68 381.47 -6.33 -46.00 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.80 Total: 9.76 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.88 Total: -0.12 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.96 Total: -61.00 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.33 Total: -18.31 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.68 -6.33 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755795705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.595 kcal (2) G-P(sol) polarization free energy of solvation -39.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds