Wall clock time and date at job start Wed Apr 1 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 120.00172 * 2 1 4 4 C 1.52993 * 109.47148 * 269.99952 * 3 2 1 5 5 H 1.09000 * 109.47300 * 305.00006 * 4 3 2 6 6 O 1.42898 * 109.47196 * 64.99940 * 4 3 2 7 7 C 1.53002 * 109.47005 * 184.99918 * 4 3 2 8 8 N 1.46501 * 109.46997 * 180.02562 * 7 4 3 9 9 C 1.36932 * 120.00055 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99700 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31612 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47290 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46968 * 120.00120 * 13 11 9 16 16 H 1.48499 * 109.46823 * 239.99903 * 13 11 9 17 17 C 1.34777 * 120.00051 * 180.02562 * 2 1 3 18 18 O 1.21548 * 120.00098 * 184.86704 * 17 2 1 19 19 C 1.47856 * 120.00141 * 4.86834 * 17 2 1 20 20 C 1.39622 * 120.11138 * 320.77781 * 19 17 2 21 21 C 1.37974 * 119.98583 * 180.02562 * 20 19 17 22 22 C 1.38265 * 120.21620 * 359.97438 * 21 20 19 23 23 C 1.38905 * 120.22504 * 359.97438 * 22 21 20 24 24 N 1.40274 * 119.99227 * 179.97438 * 23 22 21 25 25 C 1.36117 * 125.93713 * 4.71824 * 24 23 22 26 26 C 1.35377 * 106.04594 * 179.90095 * 25 24 23 27 27 N 1.33780 * 106.53777 * 0.34778 * 26 25 24 28 28 N 1.28599 * 109.05894 * 359.77460 * 27 26 25 29 29 C 1.38579 * 120.01330 * 0.26957 * 23 22 21 30 30 H 1.09002 * 109.47090 * 265.52505 * 1 2 3 31 31 H 1.08999 * 109.46646 * 25.52455 * 1 2 3 32 32 H 1.08997 * 109.46943 * 145.52229 * 1 2 3 33 33 H 1.09003 * 109.46589 * 30.00397 * 3 2 1 34 34 H 1.09000 * 109.46827 * 149.99622 * 3 2 1 35 35 H 0.96701 * 114.00274 * 59.99502 * 6 4 3 36 36 H 1.09000 * 109.46682 * 299.99948 * 7 4 3 37 37 H 1.08999 * 109.47147 * 60.00239 * 7 4 3 38 38 H 0.97003 * 120.00164 * 359.97438 * 8 7 4 39 39 H 0.97005 * 119.99467 * 180.02562 * 12 11 9 40 40 H 1.08005 * 120.00560 * 359.97400 * 20 19 17 41 41 H 1.08001 * 119.89350 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.88703 * 180.02562 * 22 21 20 43 43 H 1.07992 * 126.97889 * 0.03242 * 25 24 23 44 44 H 1.08004 * 126.73338 * 180.10486 * 26 25 24 45 45 H 1.08007 * 120.10503 * 179.74817 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7104 -1.4424 5 1 2.9643 0.9131 -1.9815 6 8 1.2062 1.9936 -2.0813 7 6 3.3239 2.9681 -1.4442 8 7 3.5676 3.3914 -2.8254 9 6 4.3276 4.5022 -3.0771 10 1 4.7470 5.0666 -2.2574 11 6 4.5590 4.9030 -4.3859 12 7 4.0474 4.2155 -5.3848 13 14 5.5964 6.4181 -4.7292 14 1 6.0513 7.0081 -3.4446 15 1 6.7779 6.0350 -5.5432 16 1 4.7852 7.4153 -5.4728 17 6 2.1389 -1.1672 -0.0005 18 8 3.3511 -1.1691 0.0888 19 6 1.4037 -2.4453 -0.1098 20 6 0.1903 -2.6149 0.5599 21 6 -0.4933 -3.8089 0.4566 22 6 0.0187 -4.8399 -0.3092 23 6 1.2245 -4.6805 -0.9801 24 7 1.7398 -5.7299 -1.7552 25 6 1.1208 -6.9158 -2.0069 26 6 1.9688 -7.6214 -2.7915 27 7 3.0486 -6.8527 -2.9729 28 7 2.8825 -5.7412 -2.3478 29 6 1.9216 -3.4870 -0.8788 30 1 -0.3633 -0.0802 1.0245 31 1 -0.3632 0.9274 -0.4428 32 1 -0.3633 -0.8471 -0.5817 33 1 1.6085 2.0284 0.5139 34 1 3.1499 1.1384 0.5139 35 1 0.6956 2.6950 -1.6542 36 1 2.8121 3.7653 -0.9052 37 1 4.2747 2.7521 -0.9569 38 1 3.1906 2.8847 -3.5617 39 1 4.2094 4.4954 -6.2994 40 1 -0.2125 -1.8119 1.1594 41 1 -1.4315 -3.9386 0.9756 42 1 -0.5210 -5.7721 -0.3867 43 1 0.1494 -7.2292 -1.6542 44 1 1.8073 -8.6124 -3.1894 45 1 2.8613 -3.3629 -1.3965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755795705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:47 Heat of formation + Delta-G solvation = 49.688182 kcal Electronic energy + Delta-G solvation = -29190.757433 eV Core-core repulsion = 25017.836429 eV Total energy + Delta-G solvation = -4172.921004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.50011 -41.67602 -39.92687 -38.80415 -36.65121 -35.96125 -35.57325 -33.31189 -32.86986 -31.99242 -31.48355 -30.52314 -28.00712 -27.31196 -25.45760 -25.35385 -24.36723 -23.11420 -22.65804 -22.44050 -20.97713 -19.51771 -19.28051 -18.03624 -17.76156 -17.58592 -17.55973 -17.09659 -16.63988 -16.51624 -16.40299 -16.21906 -15.80546 -15.43869 -15.14438 -15.00251 -14.80262 -14.54621 -14.39649 -14.07295 -13.93022 -13.76487 -13.46578 -13.09004 -13.02183 -12.82983 -12.71719 -12.59036 -12.51334 -12.20605 -12.10475 -12.03984 -12.00623 -11.86167 -11.36156 -11.04139 -11.01371 -10.53713 -10.26148 -9.75641 -9.64305 -9.05969 -7.98185 -5.28808 -0.55769 -0.20958 0.87188 1.16363 1.43703 1.46299 1.49818 1.53629 1.56283 1.88745 2.52575 2.55438 3.19060 3.32975 3.39399 3.43736 3.62317 3.67427 3.71913 3.88807 3.97139 3.99603 4.12270 4.16996 4.20709 4.25428 4.30247 4.42016 4.50481 4.57561 4.63947 4.70546 4.74972 4.87713 4.97506 5.01605 5.06191 5.13802 5.16420 5.22410 5.37872 5.43726 5.46906 5.76989 6.21506 6.22522 6.87365 6.95213 7.28498 7.34266 8.04104 8.27014 9.25624 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.002248 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.053292 B =12450.119042 C =13960.762120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.594 5.594 3 C 0.096 3.904 4 C 0.103 3.897 5 H 0.055 0.945 6 O -0.560 6.560 7 C 0.124 3.876 8 N -0.743 5.743 9 C -0.247 4.247 10 H 0.080 0.920 11 C -0.080 4.080 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.262 1.262 15 H -0.296 1.296 16 H -0.289 1.289 17 C 0.544 3.456 18 O -0.584 6.584 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.084 4.084 22 C -0.078 4.078 23 C 0.093 3.907 24 N -0.247 5.247 25 C -0.028 4.028 26 C -0.055 4.055 27 N -0.306 5.306 28 N -0.140 5.140 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.386 0.614 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.177 0.823 41 H 0.199 0.801 42 H 0.185 0.815 43 H 0.252 0.748 44 H 0.232 0.768 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.574 -22.594 19.329 37.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.324 5.324 3 C -0.028 4.028 4 C 0.042 3.958 5 H 0.073 0.927 6 O -0.367 6.367 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.379 4.379 10 H 0.098 0.902 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.186 1.186 15 H -0.223 1.223 16 H -0.216 1.216 17 C 0.334 3.666 18 O -0.465 6.465 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.102 4.102 22 C -0.098 4.098 23 C 0.003 3.997 24 N -0.034 5.034 25 C -0.176 4.176 26 C -0.212 4.212 27 N -0.171 5.171 28 N -0.117 5.117 29 C -0.102 4.102 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.235 0.765 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.194 0.806 41 H 0.216 0.784 42 H 0.202 0.798 43 H 0.268 0.732 44 H 0.248 0.752 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.318 -22.136 18.729 35.405 hybrid contribution 0.482 0.586 -0.777 1.086 sum -19.836 -21.549 17.951 34.352 Atomic orbital electron populations 1.22562 0.76286 1.05309 1.03699 1.47691 1.09006 1.04385 1.71314 1.22120 0.99295 0.85765 0.95580 1.22172 0.84744 0.95297 0.93543 0.92698 1.86598 1.31846 1.59905 1.58330 1.21435 0.97065 0.95034 0.86840 1.42482 1.61627 1.31644 1.02787 1.19724 1.23087 1.02873 0.92219 0.90244 1.25694 1.03120 1.02915 0.95515 1.69873 1.51117 1.42852 0.98377 0.84992 0.77571 0.78691 0.77992 1.18644 1.22318 1.21593 1.18832 0.86665 0.85048 0.76080 1.90807 1.16077 1.87957 1.51636 1.19622 0.97911 0.92857 1.02286 1.22249 0.90616 1.00189 0.95973 1.21617 1.01481 0.90125 0.96929 1.21651 0.91201 1.02821 0.94137 1.17792 0.97241 0.86183 0.98517 1.45014 1.12643 1.13303 1.32483 1.24775 1.04223 0.84966 1.03676 1.24484 0.90582 1.03720 1.02370 1.75100 1.25173 0.99217 1.17614 1.78499 1.03080 1.18579 1.11584 1.20771 0.99207 0.91830 0.98367 0.88299 0.89251 0.90055 0.85383 0.90144 0.76503 0.93526 0.96111 0.79520 0.94024 0.80566 0.78420 0.79796 0.73156 0.75197 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 8.66 127.77 1.11 1.78 16 2 N -0.59 -13.01 2.84 -850.18 -2.41 -15.42 16 3 C 0.10 2.35 5.08 86.38 0.44 2.79 16 4 C 0.10 3.53 3.30 30.59 0.10 3.63 16 5 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 6 O -0.56 -17.91 11.99 -148.98 -1.79 -19.70 16 7 C 0.12 5.04 5.92 86.38 0.51 5.55 16 8 N -0.74 -40.25 5.49 -343.45 -1.89 -42.14 16 9 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 10 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 11 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 12 N -0.97 -62.95 13.06 21.65 0.28 -62.67 16 13 Si 0.98 47.91 29.55 68.60 2.03 49.93 16 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 16 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 17 C 0.54 15.56 7.35 86.79 0.64 16.20 16 18 O -0.58 -23.04 16.46 -3.87 -0.06 -23.10 16 19 C -0.12 -2.63 5.23 -20.10 -0.11 -2.73 16 20 C -0.07 -0.65 7.56 22.54 0.17 -0.48 16 21 C -0.08 -0.25 10.02 22.21 0.22 -0.03 16 22 C -0.08 -0.50 9.45 22.44 0.21 -0.29 16 23 C 0.09 1.72 6.67 38.03 0.25 1.98 16 24 N -0.25 -5.32 3.56 -187.14 -0.67 -5.99 16 25 C -0.03 -0.34 10.91 83.37 0.91 0.57 16 26 C -0.05 -0.89 12.05 83.74 1.01 0.12 16 27 N -0.31 -8.72 12.39 -58.23 -0.72 -9.44 16 28 N -0.14 -4.36 12.42 37.02 0.46 -3.90 16 29 C -0.08 -2.08 9.20 22.64 0.21 -1.87 16 30 H 0.10 0.31 6.89 -2.39 -0.02 0.29 16 31 H 0.09 0.92 7.20 -2.39 -0.02 0.90 16 32 H 0.08 0.82 5.81 -2.39 -0.01 0.81 16 33 H 0.13 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.08 2.29 7.36 -2.39 -0.02 2.27 16 35 H 0.39 8.82 9.04 -74.06 -0.67 8.15 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.37 22.25 7.54 -92.71 -0.70 21.56 16 39 H 0.25 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.18 0.49 5.30 -2.91 -0.02 0.47 16 41 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 42 H 0.18 -0.50 6.77 -2.91 -0.02 -0.52 16 43 H 0.25 -0.39 7.12 -2.91 -0.02 -0.41 16 44 H 0.23 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.10 3.59 7.69 -2.91 -0.02 3.57 16 Total: -1.00 -99.94 381.47 1.91 -98.04 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.31 Total: 25.17 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.98 Total: 9.22 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -4.94 Total: -139.56 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.85 Total: -42.80 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.93 kcal Total: -99.94 1.91 -98.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755795705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.725 kcal (2) G-P(sol) polarization free energy of solvation -99.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds