Wall clock time and date at job start Wed Apr 1 2020 04:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99295 * 2 1 4 4 C 1.53004 * 109.47509 * 269.99785 * 3 2 1 5 5 H 1.09002 * 109.46609 * 59.99638 * 4 3 2 6 6 O 1.42904 * 109.47022 * 300.00759 * 4 3 2 7 7 C 1.52997 * 109.47558 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.46845 * 185.00327 * 7 4 3 9 9 C 1.36938 * 119.99666 * 179.72534 * 8 7 4 10 10 H 1.08000 * 119.99895 * 0.26718 * 9 8 7 11 11 C 1.38815 * 120.00041 * 180.27609 * 9 8 7 12 12 N 1.31620 * 119.99568 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99959 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47270 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47394 * 119.99535 * 13 11 9 16 16 H 1.48502 * 109.46950 * 239.99596 * 13 11 9 17 17 C 1.34767 * 120.00354 * 179.97438 * 2 1 3 18 18 O 1.21585 * 120.00197 * 175.59612 * 17 2 1 19 19 C 1.47617 * 120.00290 * 355.59049 * 17 2 1 20 20 C 1.39629 * 120.18596 * 57.60318 * 19 17 2 21 21 C 1.37861 * 119.91661 * 179.97438 * 20 19 17 22 22 C 1.38506 * 120.30130 * 0.02871 * 21 20 19 23 23 C 1.38099 * 120.38507 * 359.97438 * 22 21 20 24 24 C 1.38725 * 120.07413 * 359.72078 * 23 22 21 25 25 N 1.39813 * 120.14736 * 180.30604 * 24 23 22 26 26 C 1.36326 * 126.87205 * 356.48888 * 25 24 23 27 27 C 1.34963 * 106.77724 * 179.85209 * 26 25 24 28 28 N 1.33374 * 109.01595 * 0.42683 * 27 26 25 29 29 N 1.28768 * 109.93208 * 359.73019 * 28 27 26 30 30 H 1.09000 * 109.47135 * 95.18188 * 1 2 3 31 31 H 1.09008 * 109.46838 * 215.17748 * 1 2 3 32 32 H 1.08997 * 109.47301 * 335.17677 * 1 2 3 33 33 H 1.09009 * 109.47361 * 150.00333 * 3 2 1 34 34 H 1.09005 * 109.47657 * 30.00349 * 3 2 1 35 35 H 0.96706 * 113.99384 * 299.99889 * 6 4 3 36 36 H 1.08998 * 109.47228 * 64.99551 * 7 4 3 37 37 H 1.09005 * 109.46565 * 304.99947 * 7 4 3 38 38 H 0.96998 * 120.00401 * 359.97438 * 8 7 4 39 39 H 0.96999 * 119.99513 * 180.02562 * 12 11 9 40 40 H 1.07993 * 120.04200 * 359.97438 * 20 19 17 41 41 H 1.08005 * 119.84969 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.81007 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.96450 * 179.97438 * 23 22 21 44 44 H 1.08006 * 126.60633 * 359.97438 * 26 25 24 45 45 H 1.08001 * 125.48876 * 180.13273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 1 1.4999 1.8407 -1.9563 6 8 3.2247 0.7147 -2.1162 7 6 3.2178 3.0353 -1.4425 8 7 3.3576 3.5185 -2.8185 9 6 4.0073 4.6980 -3.0673 10 1 4.4203 5.2698 -2.2495 11 6 4.1348 5.1587 -4.3705 12 7 3.6317 4.4615 -5.3671 13 14 5.0204 6.7680 -4.7098 14 1 5.4893 7.3546 -3.4287 15 1 6.1858 6.5147 -5.5946 16 1 4.0897 7.7143 -5.3758 17 6 2.1389 -1.1671 0.0005 18 8 3.3521 -1.1686 -0.0803 19 6 1.4043 -2.4436 0.0994 20 6 0.4278 -2.7666 -0.8450 21 6 -0.2546 -3.9606 -0.7476 22 6 0.0234 -4.8423 0.2838 23 6 0.9866 -4.5354 1.2246 24 6 1.6872 -3.3412 1.1381 25 7 2.6672 -3.0318 2.0861 26 6 3.0018 -3.7647 3.1858 27 6 3.9940 -3.0974 3.8117 28 7 4.2634 -1.9818 3.1322 29 7 3.4988 -1.9016 2.0991 30 1 -0.3633 -0.0928 -1.0235 31 1 -0.3633 -0.8401 0.5921 32 1 -0.3634 0.9327 0.4314 33 1 3.1499 1.1386 0.5138 34 1 1.6083 2.0285 0.5139 35 1 4.0872 0.5462 -1.7125 36 1 4.2060 2.8840 -1.0082 37 1 2.6706 3.7710 -0.8529 38 1 2.9869 3.0047 -3.5530 39 1 3.7211 4.7832 -6.2778 40 1 0.2073 -2.0821 -1.6506 41 1 -1.0100 -4.2091 -1.4784 42 1 -0.5163 -5.7753 0.3526 43 1 1.1976 -5.2277 2.0262 44 1 2.5596 -4.7002 3.4953 45 1 4.4868 -3.4132 4.7193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:53 Heat of formation + Delta-G solvation = 87.358125 kcal Electronic energy + Delta-G solvation = -30303.824378 eV Core-core repulsion = 26132.536866 eV Total energy + Delta-G solvation = -4171.287512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44899 -40.48989 -38.88480 -37.04115 -35.29790 -34.70232 -33.90114 -32.10561 -31.17980 -30.93265 -30.04525 -29.18715 -26.90360 -25.77326 -24.55575 -24.06148 -22.77691 -21.76339 -21.62088 -21.01144 -19.85285 -18.60689 -17.51613 -17.07683 -16.58191 -16.23434 -15.90213 -15.82712 -15.67266 -15.33465 -14.96303 -14.61087 -14.53728 -14.30458 -14.25462 -13.69265 -13.54537 -13.33831 -13.06334 -12.88458 -12.61872 -12.49342 -12.26731 -12.04288 -11.99951 -11.49547 -11.45077 -11.35419 -11.31819 -10.87220 -10.77736 -10.54010 -10.06165 -9.94067 -9.70271 -9.67449 -9.51068 -9.43068 -8.84662 -8.82941 -8.36934 -6.84067 -5.68361 -2.97067 0.07274 0.56925 1.53035 1.83219 2.34159 2.72682 2.91355 3.23929 3.48322 3.53574 3.56168 3.93225 4.08268 4.22410 4.40934 4.49201 4.64308 4.69077 4.75464 4.82576 4.90355 4.93306 5.04033 5.11625 5.14274 5.20184 5.36423 5.44402 5.54321 5.61373 5.63473 5.71367 5.78605 5.84428 5.85458 5.90101 6.06151 6.13511 6.33075 6.46896 6.55181 6.63394 6.85931 7.38075 7.76341 7.94038 8.25793 8.34967 8.50397 9.61426 10.20277 10.56134 11.54320 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002527 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.034306 B =11078.028235 C =12145.934020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.603 5.603 3 C 0.089 3.911 4 C 0.088 3.912 5 H 0.094 0.906 6 O -0.549 6.549 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.931 5.931 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.564 3.436 18 O -0.487 6.487 19 C -0.110 4.110 20 C -0.066 4.066 21 C -0.121 4.121 22 C -0.081 4.081 23 C -0.135 4.135 24 C 0.177 3.823 25 N -0.329 5.329 26 C 0.010 3.990 27 C -0.072 4.072 28 N -0.239 5.239 29 N -0.008 5.008 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.375 0.625 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.193 0.807 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 -24.247 19.059 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.337 5.337 3 C -0.034 4.034 4 C 0.027 3.973 5 H 0.112 0.888 6 O -0.354 6.354 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.580 5.580 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.349 3.651 18 O -0.359 6.359 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.156 4.156 24 C 0.083 3.917 25 N -0.111 5.111 26 C -0.138 4.138 27 C -0.226 4.226 28 N -0.110 5.110 29 N 0.014 4.986 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.223 0.777 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.222 0.778 39 H 0.064 0.936 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.210 0.790 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.251 -22.773 18.001 31.508 hybrid contribution 0.368 -0.289 0.380 0.603 sum -11.883 -23.062 18.381 31.795 Atomic orbital electron populations 1.21870 0.79934 1.02977 1.01854 1.47482 1.06500 1.05695 1.73993 1.22288 0.98381 0.84032 0.98700 1.22463 0.95589 0.88275 0.90983 0.88829 1.86514 1.33251 1.58877 1.56759 1.21248 0.96895 0.92563 0.89615 1.42257 1.68197 1.25063 1.01480 1.19284 1.27963 0.97529 0.92219 0.91226 1.24756 1.01661 0.99052 0.95637 1.69697 1.50579 1.39119 0.98561 0.86111 0.79005 0.83324 0.77733 1.20580 1.21873 1.21921 1.17696 0.87128 0.82782 0.77485 1.90818 1.12837 1.86187 1.46046 1.19804 0.99127 0.96276 0.96396 1.21360 0.92550 0.97330 0.97226 1.21272 1.00301 0.93697 0.98694 1.21146 0.95990 0.99625 0.93229 1.20828 0.98091 0.94921 1.01765 1.17436 0.89808 0.94954 0.89463 1.48114 1.26585 1.18633 1.17735 1.23501 1.00485 1.00439 0.89384 1.23265 1.01012 0.94028 1.04249 1.74460 1.17437 1.17544 1.01535 1.82818 1.00678 1.01628 1.13479 0.92285 0.91751 0.90669 0.89241 0.89784 0.77677 0.96021 0.95854 0.77789 0.93632 0.83900 0.84390 0.84333 0.84542 0.79008 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 9.29 59.85 0.56 1.27 16 2 N -0.60 -7.94 2.83 -182.77 -0.52 -8.46 16 3 C 0.09 1.29 5.18 -4.04 -0.02 1.27 16 4 C 0.09 1.56 3.27 -26.73 -0.09 1.47 16 5 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 6 O -0.55 -10.99 12.00 -48.45 -0.58 -11.57 16 7 C 0.13 2.66 5.90 -4.04 -0.02 2.63 16 8 N -0.73 -19.56 5.55 -59.91 -0.33 -19.89 16 9 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -29.44 13.06 55.49 0.72 -28.71 16 13 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 C 0.56 8.37 5.45 -12.44 -0.07 8.30 16 18 O -0.49 -8.99 12.56 -7.92 -0.10 -9.09 16 19 C -0.11 -1.29 4.59 -104.83 -0.48 -1.77 16 20 C -0.07 -0.57 8.09 -39.20 -0.32 -0.89 16 21 C -0.12 -0.71 10.02 -39.62 -0.40 -1.10 16 22 C -0.08 -0.40 10.03 -39.53 -0.40 -0.80 16 23 C -0.14 -0.87 9.47 -39.45 -0.37 -1.24 16 24 C 0.18 1.85 6.71 -83.31 -0.56 1.30 16 25 N -0.33 -3.92 3.84 -10.32 -0.04 -3.96 16 26 C 0.01 0.08 10.92 -16.72 -0.18 -0.10 16 27 C -0.07 -0.70 11.86 -18.05 -0.21 -0.91 16 28 N -0.24 -3.49 12.33 30.09 0.37 -3.12 16 29 N -0.01 -0.12 9.44 60.35 0.57 0.45 16 30 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 31 H 0.06 0.51 6.58 -51.92 -0.34 0.17 16 32 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.09 1.43 7.49 -51.92 -0.39 1.04 16 34 H 0.08 1.02 7.86 -51.93 -0.41 0.62 16 35 H 0.38 7.32 8.32 45.56 0.38 7.70 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 11.21 7.67 -40.82 -0.31 10.90 16 39 H 0.25 7.70 8.31 -40.82 -0.34 7.37 16 40 H 0.14 1.18 7.18 -52.49 -0.38 0.80 16 41 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 43 H 0.14 0.47 6.85 -52.48 -0.36 0.11 16 44 H 0.19 0.57 7.19 -52.48 -0.38 0.20 16 45 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -39.65 377.95 -7.11 -46.76 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.06 Total: 11.97 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.81 Total: 1.71 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: 0.78 Total: -63.70 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.68 Total: -20.66 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.65 -7.11 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.122 kcal (2) G-P(sol) polarization free energy of solvation -39.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds