Wall clock time and date at job start Wed Apr 1 2020 04:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99295 * 2 1 4 4 C 1.53004 * 109.47509 * 269.99785 * 3 2 1 5 5 H 1.09002 * 109.46609 * 59.99638 * 4 3 2 6 6 O 1.42904 * 109.47022 * 300.00759 * 4 3 2 7 7 C 1.52997 * 109.47558 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.46845 * 185.00327 * 7 4 3 9 9 C 1.36938 * 119.99666 * 179.72534 * 8 7 4 10 10 H 1.08000 * 119.99895 * 0.26718 * 9 8 7 11 11 C 1.38815 * 120.00041 * 180.27609 * 9 8 7 12 12 N 1.31620 * 119.99568 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99959 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47270 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47394 * 119.99535 * 13 11 9 16 16 H 1.48502 * 109.46950 * 239.99596 * 13 11 9 17 17 C 1.34767 * 120.00354 * 179.97438 * 2 1 3 18 18 O 1.21585 * 120.00197 * 175.59612 * 17 2 1 19 19 C 1.47617 * 120.00290 * 355.59049 * 17 2 1 20 20 C 1.39629 * 120.18596 * 57.60318 * 19 17 2 21 21 C 1.37861 * 119.91661 * 179.97438 * 20 19 17 22 22 C 1.38506 * 120.30130 * 0.02871 * 21 20 19 23 23 C 1.38099 * 120.38507 * 359.97438 * 22 21 20 24 24 C 1.38725 * 120.07413 * 359.72078 * 23 22 21 25 25 N 1.39813 * 120.14736 * 180.30604 * 24 23 22 26 26 C 1.36326 * 126.87205 * 356.48888 * 25 24 23 27 27 C 1.34963 * 106.77724 * 179.85209 * 26 25 24 28 28 N 1.33374 * 109.01595 * 0.42683 * 27 26 25 29 29 N 1.28768 * 109.93208 * 359.73019 * 28 27 26 30 30 H 1.09000 * 109.47135 * 95.18188 * 1 2 3 31 31 H 1.09008 * 109.46838 * 215.17748 * 1 2 3 32 32 H 1.08997 * 109.47301 * 335.17677 * 1 2 3 33 33 H 1.09009 * 109.47361 * 150.00333 * 3 2 1 34 34 H 1.09005 * 109.47657 * 30.00349 * 3 2 1 35 35 H 0.96706 * 113.99384 * 299.99889 * 6 4 3 36 36 H 1.08998 * 109.47228 * 64.99551 * 7 4 3 37 37 H 1.09005 * 109.46565 * 304.99947 * 7 4 3 38 38 H 0.96998 * 120.00401 * 359.97438 * 8 7 4 39 39 H 0.96999 * 119.99513 * 180.02562 * 12 11 9 40 40 H 1.07993 * 120.04200 * 359.97438 * 20 19 17 41 41 H 1.08005 * 119.84969 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.81007 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.96450 * 179.97438 * 23 22 21 44 44 H 1.08006 * 126.60633 * 359.97438 * 26 25 24 45 45 H 1.08001 * 125.48876 * 180.13273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 1 1.4999 1.8407 -1.9563 6 8 3.2247 0.7147 -2.1162 7 6 3.2178 3.0353 -1.4425 8 7 3.3576 3.5185 -2.8185 9 6 4.0073 4.6980 -3.0673 10 1 4.4203 5.2698 -2.2495 11 6 4.1348 5.1587 -4.3705 12 7 3.6317 4.4615 -5.3671 13 14 5.0204 6.7680 -4.7098 14 1 5.4893 7.3546 -3.4287 15 1 6.1858 6.5147 -5.5946 16 1 4.0897 7.7143 -5.3758 17 6 2.1389 -1.1671 0.0005 18 8 3.3521 -1.1686 -0.0803 19 6 1.4043 -2.4436 0.0994 20 6 0.4278 -2.7666 -0.8450 21 6 -0.2546 -3.9606 -0.7476 22 6 0.0234 -4.8423 0.2838 23 6 0.9866 -4.5354 1.2246 24 6 1.6872 -3.3412 1.1381 25 7 2.6672 -3.0318 2.0861 26 6 3.0018 -3.7647 3.1858 27 6 3.9940 -3.0974 3.8117 28 7 4.2634 -1.9818 3.1322 29 7 3.4988 -1.9016 2.0991 30 1 -0.3633 -0.0928 -1.0235 31 1 -0.3633 -0.8401 0.5921 32 1 -0.3634 0.9327 0.4314 33 1 3.1499 1.1386 0.5138 34 1 1.6083 2.0285 0.5139 35 1 4.0872 0.5462 -1.7125 36 1 4.2060 2.8840 -1.0082 37 1 2.6706 3.7710 -0.8529 38 1 2.9869 3.0047 -3.5530 39 1 3.7211 4.7832 -6.2778 40 1 0.2073 -2.0821 -1.6506 41 1 -1.0100 -4.2091 -1.4784 42 1 -0.5163 -5.7753 0.3526 43 1 1.1976 -5.2277 2.0262 44 1 2.5596 -4.7002 3.4953 45 1 4.4868 -3.4132 4.7193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755796425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:52 Heat of formation + Delta-G solvation = 56.315537 kcal Electronic energy + Delta-G solvation = -30305.170486 eV Core-core repulsion = 26132.536866 eV Total energy + Delta-G solvation = -4172.633620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19996 -41.35762 -39.75894 -38.47935 -36.44286 -35.89293 -35.45346 -33.27916 -32.72551 -31.67080 -30.86367 -30.49570 -27.99968 -27.13447 -25.54938 -24.92003 -24.29745 -22.90067 -22.37330 -22.28741 -20.72411 -19.29973 -19.26295 -18.38707 -17.85922 -17.17659 -16.83739 -16.67454 -16.56666 -16.41487 -16.24539 -15.99893 -15.75717 -15.26157 -15.11279 -14.92222 -14.84180 -14.44317 -14.19482 -14.05222 -13.84934 -13.72582 -13.32208 -13.08126 -12.97727 -12.82678 -12.65472 -12.60926 -12.19034 -12.16456 -12.13929 -12.10675 -12.02298 -11.85046 -11.18574 -11.01558 -10.83274 -10.37663 -10.07363 -9.52378 -9.50378 -9.04938 -7.97440 -5.27790 -0.57724 0.03351 0.87866 1.19088 1.44123 1.46456 1.56558 1.59085 1.79369 1.97938 2.53287 2.63061 3.30315 3.33261 3.40498 3.52851 3.60924 3.74590 3.87487 4.02221 4.07112 4.13391 4.16879 4.24736 4.26769 4.28937 4.35226 4.43151 4.47218 4.59097 4.60869 4.69428 4.78193 4.84739 4.87348 5.07961 5.20202 5.20713 5.27664 5.36579 5.43399 5.50801 5.57787 5.89723 6.23338 6.38550 6.73973 7.13985 7.28024 7.29495 8.04299 8.28839 9.26300 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002527 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.034306 B =11078.028235 C =12145.934020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.606 5.606 3 C 0.102 3.898 4 C 0.100 3.900 5 H 0.093 0.907 6 O -0.565 6.565 7 C 0.125 3.875 8 N -0.740 5.740 9 C -0.249 4.249 10 H 0.076 0.924 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.979 3.021 14 H -0.265 1.265 15 H -0.293 1.293 16 H -0.288 1.288 17 C 0.556 3.444 18 O -0.536 6.536 19 C -0.142 4.142 20 C -0.077 4.077 21 C -0.110 4.110 22 C -0.066 4.066 23 C -0.123 4.123 24 C 0.145 3.855 25 N -0.332 5.332 26 C 0.032 3.968 27 C -0.085 4.085 28 N -0.286 5.286 29 N -0.075 5.075 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.374 0.626 36 H 0.016 0.984 37 H 0.041 0.959 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.137 0.863 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.174 0.826 44 H 0.250 0.750 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 -26.842 20.714 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.339 5.339 3 C -0.022 4.022 4 C 0.040 3.960 5 H 0.111 0.889 6 O -0.370 6.370 7 C -0.003 4.003 8 N -0.383 5.383 9 C -0.380 4.380 10 H 0.094 0.906 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.807 3.193 14 H -0.190 1.190 15 H -0.221 1.221 16 H -0.215 1.215 17 C 0.344 3.656 18 O -0.412 6.412 19 C -0.147 4.147 20 C -0.096 4.096 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.143 4.143 24 C 0.052 3.948 25 N -0.114 5.114 26 C -0.117 4.117 27 C -0.241 4.241 28 N -0.155 5.155 29 N -0.052 5.052 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.222 0.778 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.206 0.794 39 H 0.061 0.939 40 H 0.155 0.845 41 H 0.186 0.814 42 H 0.200 0.800 43 H 0.191 0.809 44 H 0.266 0.734 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -14.739 -25.342 19.686 35.313 hybrid contribution 1.021 0.321 -0.071 1.073 sum -13.718 -25.021 19.614 34.626 Atomic orbital electron populations 1.22085 0.77485 1.04475 1.02796 1.47594 1.08017 1.04788 1.73456 1.21998 0.98458 0.85702 0.96054 1.22385 0.94411 0.86219 0.93001 0.88881 1.86481 1.33441 1.59464 1.57632 1.21420 0.97292 0.94593 0.86977 1.42455 1.68018 1.24561 1.03232 1.19703 1.27502 0.98224 0.92604 0.90615 1.25667 1.03032 1.02867 0.95468 1.69865 1.52307 1.41082 0.98776 0.84994 0.77442 0.78950 0.77873 1.18970 1.22070 1.21506 1.18354 0.86893 0.84211 0.76158 1.90773 1.15116 1.87101 1.48200 1.19721 1.00840 0.95402 0.98729 1.21418 0.92679 0.98829 0.96649 1.21672 0.99671 0.92220 0.99298 1.21698 0.94753 1.00497 0.91507 1.21322 0.96863 0.93408 1.02732 1.17913 0.90743 0.96487 0.89644 1.48328 1.26179 1.18241 1.18638 1.24445 0.98977 1.01105 0.87196 1.23998 1.01789 0.93050 1.05219 1.74399 1.18535 1.20109 1.02449 1.82804 1.03139 1.04421 1.14881 0.91578 0.90262 0.89150 0.91387 0.87071 0.77835 0.96596 0.94127 0.79382 0.93949 0.84501 0.81405 0.80013 0.80872 0.73392 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 9.29 127.77 1.19 2.51 16 2 N -0.61 -16.61 2.83 -850.43 -2.40 -19.01 16 3 C 0.10 3.08 5.18 86.38 0.45 3.53 16 4 C 0.10 3.71 3.27 30.59 0.10 3.81 16 5 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 6 O -0.56 -24.14 12.00 -136.34 -1.64 -25.78 16 7 C 0.12 5.44 5.90 86.38 0.51 5.94 16 8 N -0.74 -41.06 5.55 -343.44 -1.91 -42.96 16 9 C -0.25 -14.84 9.99 84.03 0.84 -14.00 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 11 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 12 N -0.97 -62.76 13.06 21.65 0.28 -62.47 16 13 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 16 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 17 C 0.56 17.56 5.45 86.72 0.47 18.03 16 18 O -0.54 -21.67 12.56 8.65 0.11 -21.56 16 19 C -0.14 -3.31 4.59 -20.00 -0.09 -3.40 16 20 C -0.08 -1.24 8.09 22.52 0.18 -1.06 16 21 C -0.11 -0.88 10.02 22.24 0.22 -0.66 16 22 C -0.07 -0.31 10.03 22.30 0.22 -0.09 16 23 C -0.12 -1.05 9.47 22.35 0.21 -0.84 16 24 C 0.15 2.85 6.71 38.45 0.26 3.11 16 25 N -0.33 -7.80 3.84 -186.56 -0.72 -8.51 16 26 C 0.03 0.45 10.92 83.24 0.91 1.36 16 27 C -0.09 -1.60 11.86 83.71 0.99 -0.60 16 28 N -0.29 -8.89 12.33 -58.72 -0.72 -9.61 16 29 N -0.08 -2.54 9.44 37.02 0.35 -2.19 16 30 H 0.07 1.09 7.50 -2.39 -0.02 1.07 16 31 H 0.08 1.19 6.58 -2.38 -0.02 1.18 16 32 H 0.09 1.32 7.83 -2.39 -0.02 1.30 16 33 H 0.07 2.37 7.49 -2.38 -0.02 2.36 16 34 H 0.11 2.69 7.86 -2.38 -0.02 2.68 16 35 H 0.37 15.98 8.32 -74.05 -0.62 15.37 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.37 22.47 7.67 -92.71 -0.71 21.76 16 39 H 0.25 15.63 8.31 -92.71 -0.77 14.85 16 40 H 0.14 2.25 7.18 -2.91 -0.02 2.23 16 41 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 43 H 0.17 0.11 6.85 -2.91 -0.02 0.09 16 44 H 0.25 0.14 7.19 -2.91 -0.02 0.12 16 45 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -94.18 377.95 2.03 -92.15 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.28 Total: 36.18 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.93 Total: 13.36 kcal Atomic # 7 Polarization: -139.65 SS G_CDS: -5.12 Total: -144.77 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.53 Total: -47.34 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -94.18 2.03 -92.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.462 kcal (2) G-P(sol) polarization free energy of solvation -94.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds