Wall clock time and date at job start Wed Apr 1 2020 03:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00091 * 2 1 4 4 C 1.50709 * 109.46847 * 269.99952 * 3 2 1 5 5 C 1.35353 * 126.75190 * 94.70438 * 4 3 2 6 6 N 1.35317 * 106.17306 * 179.85555 * 5 4 3 7 7 C 1.46495 * 125.86444 * 180.12090 * 6 5 4 8 8 N 1.28722 * 108.25993 * 0.41870 * 6 5 4 9 9 N 1.28632 * 110.17814 * 359.73672 * 8 6 5 10 10 C 1.34778 * 120.00042 * 179.97438 * 2 1 3 11 11 O 1.21584 * 119.99654 * 179.97438 * 10 2 1 12 12 N 1.34769 * 119.99808 * 0.02562 * 10 2 1 13 13 C 1.46508 * 120.00011 * 179.97438 * 12 10 2 14 14 C 1.50695 * 109.47103 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93247 * 90.00118 * 14 13 12 16 16 C 1.38101 * 120.07425 * 179.97438 * 15 14 13 17 17 C 1.38886 * 119.92536 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16 20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17 21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17 22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47375 * 119.99795 * 23 21 19 26 26 H 1.48506 * 109.47301 * 239.99793 * 23 21 19 27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15 28 28 C 1.38112 * 119.92511 * 359.40251 * 27 17 16 29 29 H 1.09008 * 109.47115 * 270.00402 * 1 2 3 30 30 H 1.09004 * 109.47392 * 30.00446 * 1 2 3 31 31 H 1.08993 * 109.47095 * 150.00535 * 1 2 3 32 32 H 1.08999 * 109.47238 * 29.99516 * 3 2 1 33 33 H 1.08990 * 109.47487 * 150.00087 * 3 2 1 34 34 H 1.08003 * 126.91061 * 0.02562 * 5 4 3 35 35 H 1.08995 * 109.47064 * 270.32354 * 7 6 5 36 36 H 1.09001 * 109.47265 * 30.33001 * 7 6 5 37 37 H 1.09012 * 109.46592 * 150.32947 * 7 6 5 38 38 H 0.97001 * 120.00514 * 359.97438 * 12 10 2 39 39 H 1.08998 * 109.46632 * 59.99915 * 13 12 10 40 40 H 1.08996 * 109.47144 * 299.99646 * 13 12 10 41 41 H 1.07999 * 119.96503 * 0.02562 * 15 14 13 42 42 H 1.07992 * 120.03608 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00178 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03745 * 179.72497 * 27 17 16 45 45 H 1.08003 * 119.96174 * 180.31972 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.6896 2.5505 -2.1549 6 7 2.2946 2.6498 -3.3612 7 6 1.8325 3.4628 -4.4888 8 7 3.3424 1.9023 -3.3496 9 7 3.4624 1.3242 -2.2068 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1671 0.0001 12 7 1.4650 -2.3343 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2182 -4.7485 0.0012 15 6 0.7693 -5.2733 -1.1971 16 6 -0.1277 -6.3233 -1.1999 17 6 -0.5795 -6.8519 0.0024 18 8 -1.4608 -7.8843 0.0029 19 6 -1.7701 -8.4258 -1.1926 20 1 -1.3864 -7.9848 -2.1006 21 6 -2.5809 -9.5488 -1.2561 22 7 -3.0480 -10.0864 -0.1499 23 14 -3.0088 -10.2994 -2.9122 24 1 -2.3626 -9.5133 -3.9938 25 1 -2.5226 -11.7016 -2.9607 26 1 -4.4819 -10.2795 -3.0990 27 6 -0.1317 -6.3186 1.2039 28 6 0.7704 -5.2729 1.2000 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 0.7847 3.0490 -1.8400 35 1 1.1576 2.8733 -5.1093 36 1 1.3068 4.3405 -4.1126 37 1 2.6894 3.7796 -5.0835 38 1 0.4950 -2.3344 0.0005 39 1 2.8241 -3.6608 0.8905 40 1 2.8241 -3.6609 -0.8895 41 1 1.1213 -4.8621 -2.1316 42 1 -0.4775 -6.7329 -2.1359 43 1 -3.6154 -10.8718 -0.1944 44 1 -0.4846 -6.7246 2.1404 45 1 1.1230 -4.8611 2.1341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771781447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:50 Heat of formation + Delta-G solvation = 85.998107 kcal Electronic energy + Delta-G solvation = -28633.564293 eV Core-core repulsion = 24462.217806 eV Total energy + Delta-G solvation = -4171.346487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49092 -40.08614 -39.07250 -36.96155 -35.92514 -34.83744 -34.33394 -32.39265 -31.90457 -30.25888 -29.80362 -28.58600 -27.64646 -26.45203 -25.54294 -24.31446 -22.36415 -22.02684 -21.74017 -20.60668 -19.90967 -18.23837 -18.03024 -17.59969 -16.99769 -16.97450 -16.31982 -15.91970 -15.15950 -14.84978 -14.75020 -14.49482 -14.34620 -14.14159 -13.82653 -13.65918 -13.61046 -13.55835 -13.31770 -13.19397 -12.79190 -12.73849 -12.62546 -12.30492 -12.01550 -11.80940 -11.65539 -11.37779 -10.96811 -10.93060 -10.73564 -10.65929 -10.46813 -10.37403 -10.04163 -9.53111 -9.40703 -9.01849 -8.90650 -8.63854 -8.25939 -7.30830 -6.52183 -4.10888 1.26684 1.99102 2.04708 2.15265 2.23497 2.96601 3.08834 3.10454 3.15584 3.32973 3.91020 3.96916 4.04044 4.19228 4.47383 4.51477 4.55441 4.68352 4.76435 4.83217 5.00750 5.02497 5.18089 5.20174 5.28196 5.41877 5.45041 5.50440 5.58290 5.70873 5.83044 5.87259 6.00527 6.14403 6.23366 6.31149 6.38520 6.62024 6.69071 6.82744 6.87577 6.99868 7.17863 7.31053 7.37091 7.73781 7.92877 8.03897 8.30661 8.72094 8.93433 9.62054 10.65502 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.001928 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.431525 B =14516.577507 C =15516.532801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.220 3.780 4 C -0.037 4.037 5 C -0.044 4.044 6 N -0.298 5.298 7 C 0.081 3.919 8 N -0.090 5.090 9 N -0.237 5.237 10 C 0.702 3.298 11 O -0.577 6.577 12 N -0.738 5.738 13 C 0.197 3.803 14 C -0.212 4.212 15 C -0.051 4.051 16 C -0.237 4.237 17 C 0.160 3.840 18 O -0.174 6.174 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.196 4.196 28 C -0.054 4.054 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.189 0.811 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.118 0.882 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 27.738 -3.575 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.372 5.372 3 C 0.094 3.906 4 C -0.177 4.177 5 C -0.196 4.196 6 N -0.091 5.091 7 C -0.060 4.060 8 N -0.070 5.070 9 N -0.104 5.104 10 C 0.403 3.597 11 O -0.453 6.453 12 N -0.395 5.395 13 C 0.074 3.926 14 C -0.213 4.213 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.106 3.894 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.215 4.215 28 C -0.072 4.072 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.206 0.794 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.066 26.887 -4.171 27.677 hybrid contribution -1.938 0.110 -0.621 2.038 sum 3.128 26.997 -4.792 27.597 Atomic orbital electron populations 1.21724 0.79843 1.02959 1.01868 1.47013 1.06127 1.04705 1.79317 1.19374 0.98876 0.84150 0.88197 1.22573 0.94693 1.00398 1.00028 1.23400 1.02986 1.06471 0.86775 1.47313 1.18147 1.31554 1.12092 1.22255 1.02288 0.94641 0.86809 1.78416 1.04908 1.06052 1.17652 1.75238 1.20741 1.17608 0.96796 1.15953 0.85444 0.80340 0.77962 1.90948 1.11286 1.85990 1.57112 1.45632 1.09972 1.04510 1.79356 1.19825 0.92083 0.78933 1.01767 1.19247 1.06288 1.02151 0.93633 1.20657 0.95055 0.94730 0.96514 1.21160 1.04510 1.01501 0.98479 1.19439 0.88269 0.88415 0.93304 1.83977 1.50620 1.39972 1.33145 1.21399 1.31493 1.10875 0.83087 0.88901 1.25319 0.96190 0.95647 0.99370 1.70043 1.31301 1.21085 1.26987 0.85631 0.78582 0.79117 0.80016 1.19064 1.20054 1.20108 1.20215 1.03639 1.01355 0.96274 1.20548 0.95289 0.94782 0.96627 0.92250 0.91220 0.91348 0.88712 0.87855 0.79403 0.89117 0.88353 0.88045 0.76884 0.91672 0.91811 0.87460 0.85470 0.91958 0.86381 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.20 59.85 0.61 1.16 16 2 N -0.63 -6.76 2.86 -188.74 -0.54 -7.30 16 3 C 0.22 2.05 5.97 -5.19 -0.03 2.02 16 4 C -0.04 -0.40 6.83 -82.77 -0.57 -0.97 16 5 C -0.04 -0.32 11.55 -17.04 -0.20 -0.52 16 6 N -0.30 -2.49 3.74 -68.06 -0.25 -2.74 16 7 C 0.08 0.23 11.39 59.84 0.68 0.91 16 8 N -0.09 -1.18 13.17 60.35 0.79 -0.39 16 9 N -0.24 -3.54 12.41 33.29 0.41 -3.13 16 10 C 0.70 10.34 8.28 -86.92 -0.72 9.62 16 11 O -0.58 -10.82 15.92 5.29 0.08 -10.73 16 12 N -0.74 -10.12 5.41 -66.42 -0.36 -10.48 16 13 C 0.20 2.99 5.80 -5.19 -0.03 2.96 16 14 C -0.21 -3.51 5.25 -104.58 -0.55 -4.06 16 15 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 16 C -0.24 -4.99 9.17 -39.39 -0.36 -5.35 16 17 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 18 O -0.17 -4.85 9.76 0.05 0.00 -4.85 16 19 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.74 13.67 55.48 0.76 -23.99 16 23 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 C -0.20 -3.96 9.99 -39.39 -0.39 -4.35 16 28 C -0.05 -0.92 9.69 -39.60 -0.38 -1.30 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.07 0.52 6.36 -51.93 -0.33 0.18 16 32 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.10 1.18 7.42 -51.93 -0.39 0.79 16 34 H 0.19 0.50 8.06 -52.48 -0.42 0.08 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.10 0.24 8.14 -51.92 -0.42 -0.19 16 38 H 0.40 4.76 6.19 -40.82 -0.25 4.51 16 39 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -37.77 389.48 -6.37 -44.15 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.73 Total: 5.60 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.39 Total: -7.14 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.81 Total: -48.02 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.59 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.77 -6.37 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771781447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.147 kcal (2) G-P(sol) polarization free energy of solvation -37.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds