Wall clock time and date at job start Wed Apr 1 2020 03:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00091 * 2 1 4 4 C 1.50709 * 109.46847 * 269.99952 * 3 2 1 5 5 C 1.35353 * 126.75190 * 94.70438 * 4 3 2 6 6 N 1.35317 * 106.17306 * 179.85555 * 5 4 3 7 7 C 1.46495 * 125.86444 * 180.12090 * 6 5 4 8 8 N 1.28722 * 108.25993 * 0.41870 * 6 5 4 9 9 N 1.28632 * 110.17814 * 359.73672 * 8 6 5 10 10 C 1.34778 * 120.00042 * 179.97438 * 2 1 3 11 11 O 1.21584 * 119.99654 * 179.97438 * 10 2 1 12 12 N 1.34769 * 119.99808 * 0.02562 * 10 2 1 13 13 C 1.46508 * 120.00011 * 179.97438 * 12 10 2 14 14 C 1.50695 * 109.47103 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93247 * 90.00118 * 14 13 12 16 16 C 1.38101 * 120.07425 * 179.97438 * 15 14 13 17 17 C 1.38886 * 119.92536 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16 20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17 21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17 22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47375 * 119.99795 * 23 21 19 26 26 H 1.48506 * 109.47301 * 239.99793 * 23 21 19 27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15 28 28 C 1.38112 * 119.92511 * 359.40251 * 27 17 16 29 29 H 1.09008 * 109.47115 * 270.00402 * 1 2 3 30 30 H 1.09004 * 109.47392 * 30.00446 * 1 2 3 31 31 H 1.08993 * 109.47095 * 150.00535 * 1 2 3 32 32 H 1.08999 * 109.47238 * 29.99516 * 3 2 1 33 33 H 1.08990 * 109.47487 * 150.00087 * 3 2 1 34 34 H 1.08003 * 126.91061 * 0.02562 * 5 4 3 35 35 H 1.08995 * 109.47064 * 270.32354 * 7 6 5 36 36 H 1.09001 * 109.47265 * 30.33001 * 7 6 5 37 37 H 1.09012 * 109.46592 * 150.32947 * 7 6 5 38 38 H 0.97001 * 120.00514 * 359.97438 * 12 10 2 39 39 H 1.08998 * 109.46632 * 59.99915 * 13 12 10 40 40 H 1.08996 * 109.47144 * 299.99646 * 13 12 10 41 41 H 1.07999 * 119.96503 * 0.02562 * 15 14 13 42 42 H 1.07992 * 120.03608 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00178 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03745 * 179.72497 * 27 17 16 45 45 H 1.08003 * 119.96174 * 180.31972 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.6896 2.5505 -2.1549 6 7 2.2946 2.6498 -3.3612 7 6 1.8325 3.4628 -4.4888 8 7 3.3424 1.9023 -3.3496 9 7 3.4624 1.3242 -2.2068 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1671 0.0001 12 7 1.4650 -2.3343 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2182 -4.7485 0.0012 15 6 0.7693 -5.2733 -1.1971 16 6 -0.1277 -6.3233 -1.1999 17 6 -0.5795 -6.8519 0.0024 18 8 -1.4608 -7.8843 0.0029 19 6 -1.7701 -8.4258 -1.1926 20 1 -1.3864 -7.9848 -2.1006 21 6 -2.5809 -9.5488 -1.2561 22 7 -3.0480 -10.0864 -0.1499 23 14 -3.0088 -10.2994 -2.9122 24 1 -2.3626 -9.5133 -3.9938 25 1 -2.5226 -11.7016 -2.9607 26 1 -4.4819 -10.2795 -3.0990 27 6 -0.1317 -6.3186 1.2039 28 6 0.7704 -5.2729 1.2000 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 0.7847 3.0490 -1.8400 35 1 1.1576 2.8733 -5.1093 36 1 1.3068 4.3405 -4.1126 37 1 2.6894 3.7796 -5.0835 38 1 0.4950 -2.3344 0.0005 39 1 2.8241 -3.6608 0.8905 40 1 2.8241 -3.6609 -0.8895 41 1 1.1213 -4.8621 -2.1316 42 1 -0.4775 -6.7329 -2.1359 43 1 -3.6154 -10.8718 -0.1944 44 1 -0.4846 -6.7246 2.1404 45 1 1.1230 -4.8611 2.1341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771781447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:49 Heat of formation + Delta-G solvation = 58.002123 kcal Electronic energy + Delta-G solvation = -28634.778290 eV Core-core repulsion = 24462.217806 eV Total energy + Delta-G solvation = -4172.560484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.17498 -41.21733 -40.69853 -38.57639 -36.85941 -35.73948 -35.37175 -34.28012 -32.73010 -31.84408 -31.19538 -29.07801 -28.26237 -27.78063 -27.03439 -25.61144 -23.64952 -22.99792 -22.55462 -22.10979 -20.93020 -19.88119 -19.23453 -18.74969 -18.15622 -17.68874 -17.23143 -16.85114 -16.41030 -16.35238 -15.98648 -15.78695 -15.59504 -15.34141 -15.13248 -15.04431 -14.62065 -14.38294 -14.28028 -14.00974 -13.95850 -13.63979 -13.57764 -13.37894 -13.22384 -13.07305 -12.94309 -12.56960 -12.50142 -12.35008 -12.23523 -12.09392 -11.65535 -11.27793 -11.20768 -10.97976 -10.81675 -10.25170 -10.14311 -9.82214 -9.53354 -9.02387 -8.48743 -6.16710 0.51450 0.56808 0.68054 1.32614 1.35598 1.43292 1.53357 1.63305 2.04813 2.16561 2.23975 2.78507 3.08114 3.27194 3.44770 3.48610 3.78977 3.87747 4.02179 4.07559 4.16185 4.16617 4.30986 4.34136 4.45560 4.46152 4.56151 4.64373 4.67411 4.73421 4.79920 4.84052 4.94598 4.98689 5.03634 5.14279 5.16941 5.25634 5.49113 5.54495 5.58977 5.68125 5.73566 5.75652 5.95080 6.01192 6.14802 6.96190 7.02570 7.57972 7.64174 7.75178 8.74179 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.001928 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.431525 B =14516.577507 C =15516.532801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.626 5.626 3 C 0.219 3.781 4 C -0.063 4.063 5 C -0.015 4.015 6 N -0.291 5.291 7 C 0.070 3.930 8 N -0.138 5.138 9 N -0.300 5.300 10 C 0.695 3.305 11 O -0.625 6.625 12 N -0.732 5.732 13 C 0.204 3.796 14 C -0.180 4.180 15 C -0.047 4.047 16 C -0.242 4.242 17 C 0.124 3.876 18 O -0.227 6.227 19 C -0.413 4.413 20 H 0.102 0.898 21 C -0.022 4.022 22 N -0.917 5.917 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.267 1.267 27 C -0.201 4.201 28 C -0.041 4.041 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.406 0.594 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 31.374 -4.398 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.363 5.363 3 C 0.094 3.906 4 C -0.205 4.205 5 C -0.168 4.168 6 N -0.084 5.084 7 C -0.070 4.070 8 N -0.117 5.117 9 N -0.166 5.166 10 C 0.396 3.604 11 O -0.505 6.505 12 N -0.390 5.390 13 C 0.080 3.920 14 C -0.181 4.181 15 C -0.066 4.066 16 C -0.262 4.262 17 C 0.073 3.927 18 O -0.133 6.133 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.555 5.555 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.195 1.195 26 H -0.192 1.192 27 C -0.220 4.220 28 C -0.059 4.059 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.120 0.880 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.082 30.606 -5.023 31.283 hybrid contribution -1.467 -0.619 -0.297 1.620 sum 2.615 29.987 -5.320 30.568 Atomic orbital electron populations 1.22011 0.77167 1.04295 1.03441 1.47082 1.07719 1.03759 1.77757 1.19601 0.98463 0.84582 0.87922 1.22931 0.94954 1.01899 1.00683 1.24132 1.03131 1.04216 0.85334 1.47767 1.16831 1.30300 1.13539 1.22726 1.02806 0.95488 0.85931 1.78313 1.07513 1.08220 1.17667 1.75160 1.23456 1.19747 0.98241 1.16185 0.85002 0.81440 0.77755 1.90921 1.13558 1.86813 1.59214 1.45370 1.10319 1.03860 1.79412 1.19657 0.91523 0.78982 1.01816 1.19464 1.04351 1.01274 0.93036 1.20887 0.93920 0.93584 0.98198 1.21213 1.05173 1.02315 0.97469 1.19970 0.89018 0.88416 0.95274 1.83948 1.53442 1.42365 1.33594 1.21851 1.31932 1.11494 0.83599 0.88036 1.26571 0.95874 0.95875 1.03636 1.70178 1.33340 1.22317 1.29700 0.84536 0.78601 0.78117 0.75017 1.17585 1.19504 1.19205 1.20451 1.04122 1.02022 0.95449 1.20873 0.93529 0.93172 0.98353 0.90504 0.87880 0.92088 0.83555 0.90977 0.73972 0.87931 0.84420 0.88048 0.75692 0.91180 0.92507 0.85052 0.86251 0.91777 0.86348 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.20 127.77 1.30 2.01 16 2 N -0.63 -11.74 2.86 -869.31 -2.48 -14.22 16 3 C 0.22 3.59 5.97 85.64 0.51 4.10 16 4 C -0.06 -1.26 6.83 41.60 0.28 -0.97 16 5 C -0.01 -0.16 11.55 83.49 0.96 0.81 16 6 N -0.29 -4.14 3.74 -369.23 -1.38 -5.52 16 7 C 0.07 0.17 11.39 127.77 1.46 1.63 16 8 N -0.14 -3.59 13.17 37.02 0.49 -3.10 16 9 N -0.30 -9.07 12.41 -48.60 -0.60 -9.67 16 10 C 0.70 19.53 8.28 179.06 1.48 21.01 16 11 O -0.62 -23.54 15.92 -3.98 -0.06 -23.60 16 12 N -0.73 -18.45 5.41 -482.31 -2.61 -21.06 16 13 C 0.20 5.74 5.80 85.63 0.50 6.23 16 14 C -0.18 -5.54 5.25 -19.84 -0.10 -5.65 16 15 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 16 C -0.24 -10.23 9.17 22.39 0.21 -10.03 16 17 C 0.12 5.96 6.65 22.58 0.15 6.11 16 18 O -0.23 -13.32 9.76 -22.72 -0.22 -13.55 16 19 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 20 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 21 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 22 N -0.92 -55.36 13.67 21.62 0.30 -55.06 16 23 Si 1.02 42.20 29.55 68.60 2.03 44.23 16 24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.20 -8.12 9.99 22.39 0.22 -7.90 16 28 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.10 0.34 8.07 -2.38 -0.02 0.32 16 31 H 0.06 0.70 6.36 -2.39 -0.02 0.69 16 32 H 0.15 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.07 1.64 7.42 -2.39 -0.02 1.62 16 34 H 0.24 -0.42 8.06 -2.91 -0.02 -0.45 16 35 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.41 8.60 6.19 -92.71 -0.57 8.02 16 39 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 40 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 41 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -92.03 389.48 4.42 -87.60 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.46 Total: 22.71 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 8.51 Total: -8.76 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -6.30 Total: -108.64 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.29 Total: -37.15 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -92.03 4.42 -87.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771781447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.606 kcal (2) G-P(sol) polarization free energy of solvation -92.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds