Wall clock time and date at job start Wed Apr 1 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99502 * 2 1 4 4 H 1.48497 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46882 * 299.99653 * 3 2 1 6 6 H 1.48494 * 109.47168 * 59.99755 * 3 2 1 7 7 C 1.38949 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99874 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99232 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00609 * 0.02562 * 10 9 7 12 12 C 1.50711 * 119.99481 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46969 * 181.34308 * 12 10 9 14 14 C 1.46896 * 110.99883 * 162.31822 * 13 12 10 15 15 C 1.53005 * 109.47128 * 189.99873 * 14 13 12 16 16 C 1.52999 * 109.47059 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47229 * 180.02562 * 16 15 14 18 18 C 1.34774 * 120.00123 * 180.27628 * 17 16 15 19 19 O 1.21278 * 119.99895 * 359.72559 * 18 17 16 20 20 C 1.50707 * 119.99740 * 179.72162 * 18 17 16 21 21 H 1.08996 * 115.55009 * 325.66768 * 20 18 17 22 22 C 1.53006 * 117.49449 * 179.97438 * 20 18 17 23 23 C 1.52997 * 117.49468 * 111.38137 * 20 18 17 24 24 F 1.39903 * 117.49572 * 214.97529 * 23 20 18 25 25 F 1.39903 * 117.50109 * 359.97438 * 23 20 18 26 26 C 1.46897 * 111.00101 * 286.27989 * 13 12 10 27 27 C 1.52996 * 117.50151 * 3.74262 * 26 13 12 28 28 C 1.53000 * 60.00115 * 252.51490 * 27 26 13 29 29 H 0.96994 * 120.00598 * 0.02562 * 1 2 3 30 30 H 0.96990 * 120.00256 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46568 * 61.34603 * 12 10 9 32 32 H 1.08999 * 109.47006 * 301.34693 * 12 10 9 33 33 H 1.09003 * 109.46705 * 70.00662 * 14 13 12 34 34 H 1.08996 * 109.47341 * 310.00548 * 14 13 12 35 35 H 1.08998 * 109.46837 * 60.00350 * 15 14 13 36 36 H 1.08996 * 109.47561 * 300.00540 * 15 14 13 37 37 H 1.08998 * 109.47147 * 60.00373 * 16 15 14 38 38 H 1.09005 * 109.47224 * 300.00400 * 16 15 14 39 39 H 0.97008 * 119.99992 * 0.02562 * 17 16 15 40 40 H 1.08993 * 117.49665 * 0.02562 * 22 20 18 41 41 H 1.09003 * 117.49328 * 145.02095 * 22 20 18 42 42 H 1.09001 * 115.55475 * 149.45826 * 26 13 12 43 43 H 1.09000 * 117.49729 * 0.02562 * 27 26 13 44 44 H 1.09000 * 117.50083 * 145.02897 * 27 26 13 45 45 H 1.09002 * 117.49977 * 252.50509 * 28 27 26 46 46 H 1.09004 * 117.49816 * 107.48946 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8630 0.0000 13 7 2.1984 -5.9792 0.0325 14 6 1.5388 -7.2237 0.4499 15 6 2.5961 -8.2980 0.7128 16 6 1.9090 -9.5943 1.1468 17 7 2.9213 -10.6227 1.3991 18 6 2.5456 -11.8566 1.7900 19 8 1.3697 -12.1141 1.9375 20 6 3.5867 -12.9163 2.0435 21 1 4.4648 -12.8764 1.3989 22 6 3.0965 -14.2967 2.4855 23 6 3.7909 -13.3745 3.4889 24 9 5.0908 -13.7101 3.8826 25 9 2.9972 -12.7772 4.4741 26 6 2.8598 -6.1446 -1.2686 27 6 2.5337 -5.1248 -2.3616 28 6 1.9872 -6.5506 -2.4581 29 1 -0.4851 0.8399 -0.0004 30 1 0.3536 -2.3906 -0.0002 31 1 0.6360 -4.9309 -0.9021 32 1 0.5991 -4.9105 0.8773 33 1 0.8667 -7.5609 -0.3393 34 1 0.9682 -7.0446 1.3611 35 1 3.2682 -7.9607 1.5018 36 1 3.1666 -8.4770 -0.1985 37 1 1.2371 -9.9313 0.3575 38 1 1.3381 -9.4155 2.0581 39 1 3.8619 -10.4166 1.2814 40 1 2.0212 -14.4384 2.5925 41 1 3.6523 -15.1651 2.1317 42 1 3.8761 -6.5369 -1.2330 43 1 1.8287 -4.3309 -2.1150 44 1 3.3356 -4.8459 -3.0451 45 1 2.4295 -7.2097 -3.2051 46 1 0.9224 -6.6949 -2.2750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266135708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:22 Heat of formation + Delta-G solvation = -98.197082 kcal Electronic energy + Delta-G solvation = -29463.433534 eV Core-core repulsion = 24833.410558 eV Total energy + Delta-G solvation = -4630.022976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20218 -47.87084 -40.29136 -39.54332 -37.37970 -36.46249 -35.61651 -33.87908 -33.72979 -31.46410 -31.05495 -27.75686 -25.83428 -24.34733 -23.81780 -23.09114 -22.34199 -21.82657 -20.84132 -19.83212 -18.81836 -18.71608 -17.81728 -17.73230 -16.96886 -16.78727 -16.50116 -16.29416 -15.82279 -15.58975 -15.09148 -14.60373 -14.53394 -14.37507 -14.36951 -14.13431 -14.01869 -13.97453 -13.58524 -13.40472 -12.98652 -12.86921 -12.65903 -12.08665 -12.00806 -11.77843 -11.70760 -11.46727 -11.40052 -11.16308 -11.01115 -10.83443 -10.80436 -10.42462 -10.34289 -10.33342 -10.20560 -9.88350 -9.48034 -9.46163 -8.46498 -7.93724 -7.86528 -6.39519 -3.80083 1.64694 2.40121 2.58241 2.85887 3.17163 3.27575 3.34493 3.58546 3.76815 3.87296 3.96219 4.01541 4.07491 4.23418 4.29859 4.72686 4.81301 4.87610 4.95483 4.98585 5.06508 5.12051 5.16642 5.20334 5.21594 5.26646 5.39083 5.47220 5.58367 5.70245 5.76942 5.84972 5.93285 5.99108 6.10221 6.18292 6.27059 6.30499 6.45902 7.00210 7.18171 7.30237 7.57318 7.70453 8.08700 8.64912 9.21217 9.57400 10.09949 10.78485 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.001676 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.774477 B =16699.741358 C =17147.369607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.295 4.295 8 H 0.103 0.897 9 N -0.570 5.570 10 C 0.448 3.552 11 O -0.569 6.569 12 C 0.037 3.963 13 N -0.484 5.484 14 C 0.061 3.939 15 C -0.125 4.125 16 C 0.120 3.880 17 N -0.718 5.718 18 C 0.542 3.458 19 O -0.526 6.526 20 C -0.196 4.196 21 H 0.151 0.849 22 C -0.140 4.140 23 C 0.223 3.777 24 F -0.154 7.154 25 F -0.149 7.149 26 C 0.046 3.954 27 C -0.168 4.168 28 C -0.229 4.229 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.405 0.595 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -26.954 0.538 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.207 5.207 10 C 0.233 3.767 11 O -0.451 6.451 12 C -0.094 4.094 13 N -0.206 5.206 14 C -0.068 4.068 15 C -0.163 4.163 16 C -0.004 4.004 17 N -0.369 5.369 18 C 0.326 3.674 19 O -0.402 6.402 20 C -0.218 4.218 21 H 0.169 0.831 22 C -0.178 4.178 23 C 0.185 3.815 24 F -0.134 7.134 25 F -0.130 7.130 26 C -0.063 4.063 27 C -0.205 4.205 28 C -0.268 4.268 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.501 -26.818 1.065 27.214 hybrid contribution -0.244 0.998 -0.539 1.160 sum 4.257 -25.820 0.526 26.174 Atomic orbital electron populations 1.69617 1.05898 1.27944 1.51052 1.25242 0.95619 0.99643 0.97564 0.85822 0.79697 0.81302 0.77656 1.19271 1.20844 1.20816 1.19720 0.93320 0.82182 1.47245 0.87921 1.41873 1.09100 1.04569 1.65196 1.19625 0.88488 0.84325 0.84234 1.90528 1.13490 1.86831 1.54273 1.22018 0.94061 0.91733 1.01614 1.61552 1.29943 1.02696 1.26384 1.21994 0.95068 0.89397 1.00306 1.21711 0.99126 0.92678 1.02786 1.21419 0.90641 0.86712 1.01625 1.45882 1.11232 1.10952 1.68811 1.19147 0.88470 0.82507 0.77267 1.90748 1.18039 1.80454 1.50929 1.23755 1.03028 0.97774 0.97234 0.83140 1.24303 1.04586 0.93280 0.95668 1.19638 0.77659 1.02227 0.81939 1.93074 1.35909 1.92303 1.92144 1.93101 1.72076 1.84088 1.63713 1.22549 0.97727 1.03225 0.82841 1.23239 1.03642 0.92340 1.01271 1.23470 1.00076 0.99673 1.03567 0.92010 0.77642 0.92865 0.89479 0.94386 0.90456 0.90091 0.90935 0.91147 0.90985 0.76080 0.84533 0.84871 0.86363 0.87884 0.88730 0.89030 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.20 5.29 -10.96 -0.06 -14.26 16 10 C 0.45 10.28 5.84 -10.98 -0.06 10.22 16 11 O -0.57 -14.95 14.79 5.55 0.08 -14.87 16 12 C 0.04 0.64 5.00 -4.97 -0.02 0.62 16 13 N -0.48 -7.48 4.34 -228.08 -0.99 -8.47 16 14 C 0.06 0.69 4.85 -3.82 -0.02 0.68 16 15 C -0.12 -1.14 5.33 -26.73 -0.14 -1.28 16 16 C 0.12 1.04 5.67 -4.04 -0.02 1.01 16 17 N -0.72 -5.47 5.56 -60.29 -0.33 -5.80 16 18 C 0.54 4.95 7.25 -10.98 -0.08 4.87 16 19 O -0.53 -6.77 16.26 5.56 0.09 -6.68 16 20 C -0.20 -1.16 6.18 -91.77 -0.57 -1.73 16 21 H 0.15 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.14 -0.72 10.01 -26.75 -0.27 -0.98 16 23 C 0.22 1.67 5.19 -26.76 -0.14 1.53 16 24 F -0.15 -1.21 17.60 2.25 0.04 -1.17 16 25 F -0.15 -1.57 17.13 2.25 0.04 -1.53 16 26 C 0.05 0.67 4.55 -67.72 -0.31 0.37 16 27 C -0.17 -2.70 8.48 -26.73 -0.23 -2.92 16 28 C -0.23 -2.88 9.26 -26.73 -0.25 -3.12 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 31 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 32 H 0.09 1.37 7.77 -51.93 -0.40 0.97 16 33 H 0.04 0.41 6.87 -51.93 -0.36 0.05 16 34 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 2.07 8.47 -40.82 -0.35 1.73 16 40 H 0.14 0.81 7.67 -51.93 -0.40 0.41 16 41 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.12 1.67 8.03 -51.93 -0.42 1.25 16 43 H 0.10 1.92 4.91 -51.93 -0.26 1.67 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.07 7.15 -51.93 -0.37 0.70 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -33.77 390.05 -8.34 -42.12 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.44 Total: 11.17 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.35 Total: 1.41 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.66 Total: -52.33 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.17 Total: -21.56 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.70 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.77 -8.34 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266135708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.082 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds