Wall clock time and date at job start Wed Apr 1 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00141 * 2 1 4 4 C 1.53002 * 109.47243 * 66.04370 * 3 2 1 5 5 N 1.46506 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 3 7 7 O 1.21534 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.48056 * 119.99913 * 179.97438 * 6 5 4 9 9 C 1.39768 * 119.46742 * 179.73149 * 8 6 5 10 10 C 1.38136 * 119.56997 * 179.74794 * 9 8 6 11 11 C 1.39254 * 118.38154 * 0.49947 * 10 9 8 12 12 N 1.37343 * 133.61445 * 179.77241 * 11 10 9 13 13 H 0.97010 * 125.05298 * 359.96928 * 12 11 10 14 14 C 1.36718 * 109.89857 * 179.97438 * 12 11 10 15 15 C 1.34289 * 110.01859 * 359.97438 * 14 12 11 16 16 C 1.41189 * 119.09484 * 359.76141 * 11 10 9 17 17 N 1.32439 * 119.47138 * 0.02562 * 8 6 5 18 18 C 1.46898 * 110.99953 * 236.04692 * 2 1 3 19 19 C 1.50710 * 109.46709 * 293.95147 * 18 2 1 20 20 O 1.21286 * 120.00152 * 0.02562 * 19 18 2 21 21 N 1.34777 * 119.99604 * 179.97438 * 19 18 2 22 22 C 1.37093 * 120.00027 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99632 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00446 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00166 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99684 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47289 * 90.00056 * 26 24 22 28 28 H 1.48502 * 109.46814 * 209.99690 * 26 24 22 29 29 H 1.48500 * 109.47271 * 329.99728 * 26 24 22 30 30 H 1.08996 * 109.46988 * 59.99974 * 1 2 3 31 31 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46850 * 300.00334 * 1 2 3 33 33 H 1.09004 * 109.47041 * 306.04581 * 3 2 1 34 34 H 1.09004 * 109.47535 * 186.04620 * 3 2 1 35 35 H 1.09004 * 109.46930 * 60.00143 * 4 3 2 36 36 H 1.09000 * 109.47312 * 300.00087 * 4 3 2 37 37 H 0.96999 * 120.00080 * 0.02562 * 5 4 3 38 38 H 1.07999 * 120.21396 * 359.97438 * 9 8 6 39 39 H 1.08004 * 120.80959 * 180.26258 * 10 9 8 40 40 H 1.08000 * 124.99115 * 180.02562 * 14 12 11 41 41 H 1.08004 * 126.48240 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.47665 * 53.95228 * 18 2 1 43 43 H 1.08996 * 109.47097 * 173.95947 * 18 2 1 44 44 H 0.96998 * 120.00220 * 0.02562 * 21 19 18 45 45 H 0.97002 * 120.00405 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 7 2.1571 3.4250 1.3184 6 6 1.9558 4.2241 2.3849 7 8 1.3387 3.8101 3.3466 8 6 2.4874 5.6059 2.3854 9 6 2.2674 6.4269 3.4949 10 6 2.7669 7.7148 3.4997 11 6 3.4704 8.1561 2.3819 12 7 4.0830 9.3410 2.0550 13 1 4.1145 10.1271 2.6227 14 6 4.6418 9.2483 0.8107 15 6 4.4183 8.0281 0.2962 16 6 3.6513 7.2758 1.2929 17 7 3.1588 6.0461 1.3321 18 6 1.9954 -0.7660 -1.1376 19 6 1.6369 -2.2205 -0.9727 20 8 1.0046 -2.5831 -0.0033 21 7 2.0179 -3.1180 -1.9031 22 6 1.6914 -4.4411 -1.7535 23 1 1.1291 -4.7641 -0.8899 24 6 2.0838 -5.3664 -2.7130 25 7 1.7711 -6.6346 -2.5693 26 14 3.0569 -4.8077 -4.2064 27 1 4.5093 -4.8762 -3.9048 28 1 2.7482 -5.6931 -5.3579 29 1 2.6867 -3.4097 -4.5438 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.5611 1.9273 -0.8310 34 1 3.0798 1.3444 -0.1082 35 1 2.0658 1.5015 2.1492 36 1 0.5472 2.0845 1.4265 37 1 2.6493 3.7555 0.5507 38 1 1.7135 6.0556 4.3444 39 1 2.6123 8.3649 4.3482 40 1 5.1841 10.0397 0.3147 41 1 4.7415 7.6695 -0.6699 42 1 1.5611 -0.3873 -2.0628 43 1 3.0797 -0.6612 -1.1756 44 1 2.5233 -2.8279 -2.6786 45 1 2.0454 -7.2807 -3.2388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663230363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:01 Heat of formation + Delta-G solvation = 21.413513 kcal Electronic energy + Delta-G solvation = -28066.406226 eV Core-core repulsion = 23892.259141 eV Total energy + Delta-G solvation = -4174.147085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08028 -39.98866 -38.79364 -37.89722 -36.81240 -34.70953 -33.83393 -33.30883 -31.64497 -30.94811 -30.00864 -29.28876 -27.77565 -25.65012 -24.78109 -23.71748 -22.97208 -21.47283 -21.16972 -20.75224 -19.31571 -18.79011 -18.24849 -18.01737 -17.26633 -16.28015 -16.01789 -15.85401 -15.48618 -15.23103 -15.04688 -14.95576 -14.76930 -14.34199 -14.02249 -13.80069 -13.66378 -13.56986 -13.22321 -13.17437 -13.10829 -13.01137 -12.67239 -12.39347 -12.00511 -11.79627 -11.48463 -11.31678 -11.05621 -10.99642 -10.89119 -10.57101 -10.52085 -9.94446 -9.82873 -9.50607 -9.20229 -8.90324 -8.68573 -8.55189 -8.14661 -7.95440 -6.27658 -3.78896 0.35385 0.56942 2.06056 2.39195 2.57082 2.86403 3.04912 3.09436 3.17448 3.55129 3.60948 3.77667 4.04941 4.10183 4.13504 4.39415 4.42840 4.52648 4.76319 4.80022 4.88909 5.04193 5.08142 5.19024 5.24660 5.38130 5.42603 5.54924 5.55395 5.66146 5.80600 5.83604 5.87330 5.89523 5.91712 5.97528 6.03060 6.28592 6.34275 6.55861 6.76581 7.14178 7.23149 7.29500 7.51629 7.62015 8.04426 8.18448 8.63975 8.99082 9.46142 9.87504 10.85516 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.001630 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.913731 B =17172.843537 C =18287.997523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.709 5.709 6 C 0.575 3.425 7 O -0.533 6.533 8 C 0.074 3.926 9 C -0.096 4.096 10 C -0.092 4.092 11 C 0.065 3.935 12 N -0.589 5.589 13 H 0.420 0.580 14 C 0.067 3.933 15 C -0.183 4.183 16 C 0.089 3.911 17 N -0.419 5.419 18 C 0.044 3.956 19 C 0.453 3.547 20 O -0.557 6.557 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.016 0.984 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.181 0.819 41 H 0.158 0.842 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 37.796 5.105 38.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.361 5.361 6 C 0.359 3.641 7 O -0.409 6.409 8 C -0.074 4.074 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.046 4.046 12 N -0.193 5.193 13 H 0.258 0.742 14 C -0.060 4.060 15 C -0.208 4.208 16 C -0.048 4.048 17 N -0.130 5.130 18 C -0.087 4.087 19 C 0.239 3.761 20 O -0.439 6.439 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.138 0.862 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.035 0.965 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.198 0.802 41 H 0.176 0.824 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.203 0.797 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.393 36.301 6.096 37.361 hybrid contribution 0.761 1.834 -1.533 2.508 sum 7.153 38.135 4.563 39.068 Atomic orbital electron populations 1.22649 0.86331 1.04802 0.99334 1.61432 1.09062 1.10626 1.42782 1.22254 1.00864 0.89534 0.95797 1.21399 0.99734 0.80444 0.98762 1.45759 1.56770 1.13889 1.19657 1.17728 0.79699 0.83793 0.82858 1.90812 1.41121 1.74613 1.34311 1.20922 0.99762 0.95278 0.91402 1.21762 0.98447 0.92435 0.99164 1.20460 0.98697 0.96426 0.96516 1.19285 0.99412 0.88196 0.97707 1.41641 1.48081 1.12778 1.16771 0.74210 1.22002 0.99530 0.99111 0.85381 1.21638 1.05800 0.92776 1.00608 1.20023 1.00950 0.89471 0.94312 1.66865 1.06566 1.14204 1.25358 1.21902 1.00846 0.94009 0.91981 1.19623 0.85101 0.86414 0.84981 1.90534 1.42497 1.79911 1.30935 1.42205 1.51130 1.08375 1.21438 1.19432 1.33793 0.80330 1.09698 0.86249 1.25029 0.97910 0.95132 0.98098 1.69620 1.45755 1.01141 1.35697 0.86675 0.80921 0.78679 0.83119 1.19618 1.20246 1.19543 0.96520 0.88350 0.91627 0.94385 0.90134 0.89931 0.90890 0.75477 0.82815 0.84221 0.80169 0.82394 0.93212 0.89143 0.79742 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.96 60.06 0.54 0.80 16 2 N -0.51 -8.33 4.50 -244.37 -1.10 -9.43 16 3 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 4 C 0.12 1.51 5.60 -4.04 -0.02 1.49 16 5 N -0.71 -8.13 5.54 -61.17 -0.34 -8.47 16 6 C 0.57 7.43 7.81 -12.23 -0.10 7.33 16 7 O -0.53 -8.38 16.30 5.34 0.09 -8.29 16 8 C 0.07 0.83 6.74 -83.01 -0.56 0.27 16 9 C -0.10 -0.87 9.60 -39.05 -0.37 -1.24 16 10 C -0.09 -0.62 10.18 -39.24 -0.40 -1.02 16 11 C 0.06 0.47 7.29 -83.90 -0.61 -0.14 16 12 N -0.59 -2.24 6.05 -10.58 -0.06 -2.30 16 13 H 0.42 0.23 8.96 -40.82 -0.37 -0.14 16 14 C 0.07 0.23 11.81 -16.77 -0.20 0.03 16 15 C -0.18 -1.15 11.08 -37.62 -0.42 -1.57 16 16 C 0.09 0.82 7.52 -83.10 -0.62 0.20 16 17 N -0.42 -4.53 9.57 -6.43 -0.06 -4.59 16 18 C 0.04 0.74 5.45 -4.97 -0.03 0.71 16 19 C 0.45 10.35 7.48 -10.98 -0.08 10.27 16 20 O -0.56 -14.95 13.91 5.55 0.08 -14.87 16 21 N -0.59 -14.16 5.09 -10.96 -0.06 -14.22 16 22 C -0.30 -8.64 10.16 -14.94 -0.15 -8.79 16 23 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 26 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 32 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 33 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 37 H 0.41 4.03 7.78 -40.82 -0.32 3.71 16 38 H 0.15 1.28 7.61 -52.49 -0.40 0.88 16 39 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.18 -0.09 8.06 -52.49 -0.42 -0.51 16 41 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 44 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -37.24 380.85 -8.43 -45.67 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.63 Total: 11.28 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.14 Total: 9.89 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.85 Total: -64.15 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.16 Total: -23.16 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.24 -8.43 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663230363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.088 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds