Wall clock time and date at job start Wed Apr 1 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47036 * 2 1 4 4 C 1.52999 * 109.47139 * 240.00076 * 2 1 3 5 5 C 1.53002 * 109.47139 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47093 * 59.99500 * 5 4 2 7 7 C 1.53001 * 109.47337 * 299.99932 * 6 5 4 8 8 C 1.53004 * 109.47093 * 119.99576 * 2 1 3 9 9 H 1.09002 * 109.47124 * 300.00056 * 8 2 1 10 10 N 1.46500 * 109.46967 * 60.00173 * 8 2 1 11 11 C 1.34769 * 119.99986 * 204.99843 * 10 8 2 12 12 O 1.21280 * 120.00000 * 359.97438 * 11 10 8 13 13 C 1.50703 * 120.00005 * 179.97438 * 11 10 8 14 14 O 1.45199 * 109.46800 * 179.97438 * 13 11 10 15 15 C 1.34711 * 116.99752 * 180.02562 * 14 13 11 16 16 O 1.21458 * 119.99928 * 0.02562 * 15 14 13 17 17 C 1.47766 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.39972 * 120.02741 * 359.97438 * 17 15 14 19 19 C 1.38322 * 120.35023 * 179.97438 * 18 17 15 20 20 C 1.37755 * 120.41792 * 359.97438 * 19 18 17 21 21 C 1.40753 * 120.05380 * 359.97438 * 20 19 18 22 22 C 1.41441 * 120.17714 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99692 * 205.57572 * 22 21 20 24 24 C 1.39930 * 120.00003 * 25.57432 * 22 21 20 25 25 N 1.30831 * 119.99678 * 200.10902 * 24 22 21 26 26 Si 1.86797 * 120.00181 * 20.10873 * 24 22 21 27 27 H 1.48498 * 109.47196 * 264.64152 * 26 24 22 28 28 H 1.48500 * 109.46926 * 24.64264 * 26 24 22 29 29 H 1.48498 * 109.47200 * 144.63944 * 26 24 22 30 30 C 1.39044 * 120.03217 * 180.21369 * 17 15 14 31 31 H 1.09002 * 109.47181 * 300.00403 * 1 2 3 32 32 H 1.08997 * 109.47352 * 60.00335 * 1 2 3 33 33 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47334 * 59.99578 * 4 2 1 35 35 H 1.09000 * 109.46668 * 299.99568 * 4 2 1 36 36 H 1.09001 * 109.47036 * 299.99924 * 5 4 2 37 37 H 1.09002 * 109.47181 * 179.97438 * 5 4 2 38 38 H 1.09004 * 109.47137 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.46833 * 60.00299 * 6 5 4 40 40 H 1.08990 * 109.47093 * 300.00275 * 7 6 5 41 41 H 1.09002 * 109.46932 * 179.97438 * 7 6 5 42 42 H 0.96997 * 119.99912 * 24.99699 * 10 8 2 43 43 H 1.08998 * 109.46846 * 60.00085 * 13 11 10 44 44 H 1.08995 * 109.46898 * 300.00213 * 13 11 10 45 45 H 1.07995 * 119.82595 * 0.02562 * 18 17 15 46 46 H 1.08001 * 119.78647 * 179.97438 * 19 18 17 47 47 H 1.07998 * 119.97597 * 180.02562 * 20 19 18 48 48 H 0.97004 * 120.00510 * 5.10525 * 25 24 22 49 49 H 1.07998 * 120.20872 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -0.2073 2.1393 10 7 1.5517 -2.1024 1.2494 11 6 1.4230 -2.7716 2.4121 12 8 1.7119 -2.2305 3.4584 13 6 0.9201 -4.1922 2.4122 14 8 0.8720 -4.6884 3.7759 15 6 0.4415 -5.9527 3.9518 16 8 0.1157 -6.6223 2.9923 17 6 0.3656 -6.5249 5.3121 18 6 0.7414 -5.7539 6.4182 19 6 0.6725 -6.2826 7.6946 20 6 0.2330 -7.5732 7.8921 21 6 -0.1503 -8.3635 6.7922 22 6 -0.6014 -9.6890 6.9920 23 1 -0.5037 -10.4177 6.2008 24 6 -1.1741 -10.0564 8.2147 25 7 -1.2306 -11.3176 8.5579 26 14 -1.8581 -8.7460 9.3569 27 1 -0.8285 -8.3793 10.3622 28 1 -2.2283 -7.5446 8.5665 29 1 -3.0613 -9.2725 10.0500 30 6 -0.0745 -7.8313 5.4940 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6767 -0.2075 -2.1392 35 1 1.6767 -1.7489 -1.2491 36 1 3.9330 0.3071 -1.2498 37 1 3.9334 -1.2349 -2.1393 38 1 5.1706 -1.4407 -0.0002 39 1 3.7176 -2.4693 0.0000 40 1 3.9335 0.3076 1.2487 41 1 3.9340 -1.2340 2.1390 42 1 1.3210 -2.5353 0.4126 43 1 1.5923 -4.8156 1.8226 44 1 -0.0792 -4.2239 1.9781 45 1 1.0862 -4.7406 6.2745 46 1 0.9651 -5.6798 8.5415 47 1 0.1816 -7.9786 8.8918 48 1 -0.8102 -11.9912 8.0008 49 1 -0.3614 -8.4314 4.6432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:04 Heat of formation + Delta-G solvation = -130.313982 kcal Electronic energy + Delta-G solvation = -29528.237644 eV Core-core repulsion = 25418.758753 eV Total energy + Delta-G solvation = -4109.478891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78151 -40.00180 -38.44200 -37.61370 -35.93976 -34.04374 -33.84867 -32.96793 -31.01410 -30.54467 -30.11040 -28.43736 -26.55310 -24.95409 -23.67602 -22.96760 -21.89948 -21.25583 -20.59609 -20.45115 -19.43458 -18.54507 -17.57895 -17.03465 -16.58161 -16.25097 -15.92334 -15.59920 -15.37817 -15.19846 -14.56641 -14.38756 -14.18938 -14.06269 -13.85081 -13.76790 -13.26437 -13.12155 -12.93086 -12.63737 -12.58075 -12.42419 -12.38156 -12.11406 -12.04439 -11.96109 -11.53249 -11.36009 -11.30029 -10.99315 -10.76378 -10.64173 -10.55497 -10.43913 -10.42554 -10.13451 -9.97968 -9.83316 -9.47110 -9.32388 -9.20691 -7.97763 -7.85430 -7.40719 -4.63842 1.63886 2.34165 2.39962 2.54702 3.13978 3.26069 3.32621 3.39097 3.51374 3.97235 4.13860 4.25555 4.29539 4.43643 4.46416 4.64226 4.73547 4.94878 4.95236 4.96301 5.00779 5.02634 5.14814 5.17962 5.25984 5.33411 5.34386 5.39133 5.51594 5.58746 5.65526 5.74124 5.78920 5.84290 5.90036 5.90655 5.96797 6.18289 6.21005 6.28275 6.56716 6.61776 6.69074 6.98193 7.16449 7.37609 7.45744 7.47263 7.59507 7.74593 7.97607 8.20261 8.25500 8.36068 8.63379 9.91159 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.001915 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.824895 B =14619.449188 C =14797.436874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.133 4.133 8 C 0.153 3.847 9 H 0.090 0.910 10 N -0.721 5.721 11 C 0.517 3.483 12 O -0.511 6.511 13 C 0.046 3.954 14 O -0.328 6.328 15 C 0.515 3.485 16 O -0.520 6.520 17 C -0.093 4.093 18 C -0.193 4.193 19 C -0.085 4.085 20 C -0.219 4.219 21 C 0.082 3.918 22 C -0.509 4.509 23 H 0.080 0.920 24 C 0.043 3.957 25 N -0.808 5.808 26 Si 1.070 2.930 27 H -0.276 1.276 28 H -0.260 1.260 29 H -0.288 1.288 30 C -0.142 4.142 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.288 0.712 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 21.110 -17.759 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.171 4.171 8 C 0.049 3.951 9 H 0.108 0.892 10 N -0.377 5.377 11 C 0.302 3.698 12 O -0.385 6.385 13 C -0.032 4.032 14 O -0.244 6.244 15 C 0.362 3.638 16 O -0.410 6.410 17 C -0.094 4.094 18 C -0.212 4.212 19 C -0.103 4.103 20 C -0.238 4.238 21 C 0.079 3.921 22 C -0.537 4.537 23 H 0.098 0.902 24 C -0.178 4.178 25 N -0.430 5.430 26 Si 0.896 3.104 27 H -0.203 1.203 28 H -0.184 1.184 29 H -0.215 1.215 30 C -0.161 4.161 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.099 0.901 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.459 21.403 -15.869 27.198 hybrid contribution 0.795 -0.716 -2.168 2.417 sum 6.254 20.688 -18.036 28.150 Atomic orbital electron populations 1.21841 0.94538 1.02263 1.02024 1.21435 0.96181 1.00018 0.94118 0.89631 1.21617 0.95801 1.00531 0.97459 1.21561 0.95334 1.00931 0.97976 1.21512 1.00373 0.99628 0.94201 1.21954 0.95064 1.01377 0.98741 1.20979 0.93665 0.81561 0.98872 0.89181 1.45923 1.68389 1.14782 1.08615 1.20141 0.78122 0.87415 0.84117 1.90759 1.47853 1.68781 1.31119 1.22550 1.03521 0.92850 0.84274 1.86692 1.78463 1.30941 1.28290 1.21949 0.72541 0.78365 0.90961 1.90758 1.46765 1.60704 1.42817 1.18702 1.07344 0.95553 0.87833 1.20681 1.09194 0.99597 0.91756 1.20596 0.98808 0.95066 0.95864 1.21251 1.08266 0.95937 0.98315 1.17662 0.90702 0.93197 0.90543 1.20666 1.36469 0.95395 1.01160 0.90168 1.27310 0.93352 1.00002 0.97087 1.70537 1.32733 1.02296 1.37413 0.83626 0.76515 0.74773 0.75534 1.20306 1.18443 1.21549 1.21212 1.04486 0.92836 0.97572 0.92345 0.92398 0.92461 0.91499 0.92072 0.91854 0.91915 0.91932 0.91916 0.90975 0.91090 0.76507 0.88473 0.88431 0.86902 0.87717 0.87504 0.90053 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.04 37.16 0.34 -0.50 16 2 C -0.10 -0.53 2.51 -90.62 -0.23 -0.76 16 3 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.54 5.03 -26.73 -0.13 -0.67 16 5 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 6 C -0.12 -0.77 5.77 -26.73 -0.15 -0.92 16 7 C -0.13 -1.01 5.61 -26.70 -0.15 -1.16 16 8 C 0.15 1.18 2.23 -67.90 -0.15 1.03 16 9 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 10 N -0.72 -5.98 3.54 -53.77 -0.19 -6.17 16 11 C 0.52 6.43 7.87 -10.99 -0.09 6.34 16 12 O -0.51 -8.56 16.16 -14.10 -0.23 -8.79 16 13 C 0.05 0.60 5.95 36.01 0.21 0.81 16 14 O -0.33 -5.91 8.99 -47.20 -0.42 -6.33 16 15 C 0.51 10.49 7.90 34.63 0.27 10.76 16 16 O -0.52 -11.04 16.12 -19.23 -0.31 -11.35 16 17 C -0.09 -2.08 5.87 -105.05 -0.62 -2.70 16 18 C -0.19 -4.11 9.62 -38.90 -0.37 -4.49 16 19 C -0.09 -1.81 10.01 -39.73 -0.40 -2.21 16 20 C -0.22 -5.15 7.20 -38.81 -0.28 -5.43 16 21 C 0.08 2.08 5.20 -106.87 -0.56 1.52 16 22 C -0.51 -13.51 9.43 -37.73 -0.36 -13.86 16 23 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 24 C 0.04 1.11 5.40 -17.34 -0.09 1.01 16 25 N -0.81 -21.32 13.65 55.55 0.76 -20.56 16 26 Si 1.07 23.73 24.83 -169.99 -4.22 19.51 16 27 H -0.28 -5.77 6.64 56.52 0.38 -5.39 16 28 H -0.26 -5.75 6.84 56.52 0.39 -5.36 16 29 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 30 C -0.14 -3.43 9.34 -38.43 -0.36 -3.78 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 7.44 -51.93 -0.39 -0.05 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 6.51 -51.93 -0.34 -0.07 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.44 7.61 -51.93 -0.39 0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.40 2.36 6.65 -40.82 -0.27 2.09 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.11 2.24 7.59 -52.49 -0.40 1.84 16 46 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 47 H 0.11 2.45 4.27 -52.49 -0.22 2.23 16 48 H 0.29 7.39 8.73 -40.82 -0.36 7.03 16 49 H 0.11 2.74 7.64 -52.49 -0.40 2.34 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -30.42 393.47 -9.45 -39.87 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.50 Total: 3.64 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.27 Total: -15.76 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.57 Total: -26.73 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.96 Total: -26.47 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.22 Total: 19.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.42 -9.45 -39.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.439 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds