Wall clock time and date at job start Wed Apr 1 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46632 * 2 1 4 4 H 1.08996 * 109.70755 * 62.28833 * 3 2 1 5 5 C 1.52765 * 109.51144 * 302.17125 * 3 2 1 6 6 C 1.53034 * 109.38609 * 185.70972 * 5 3 2 7 7 C 1.53046 * 109.53777 * 61.23968 * 6 5 3 8 8 C 1.53188 * 109.31442 * 298.63440 * 7 6 5 9 9 N 1.46929 * 108.77611 * 54.63417 * 8 7 6 10 10 C 1.34776 * 120.62909 * 126.36492 * 9 8 7 11 11 O 1.21286 * 119.99828 * 175.06913 * 10 9 8 12 12 C 1.50699 * 120.00107 * 355.35171 * 10 9 8 13 13 O 1.45202 * 109.47025 * 179.72214 * 12 10 9 14 14 C 1.34702 * 116.99808 * 179.97438 * 13 12 10 15 15 O 1.21465 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.47765 * 119.99814 * 179.97438 * 14 13 12 17 17 C 1.39973 * 120.03433 * 0.02562 * 16 14 13 18 18 C 1.38315 * 120.35548 * 179.97438 * 17 16 14 19 19 C 1.37755 * 120.41704 * 359.97324 * 18 17 16 20 20 C 1.40749 * 120.05366 * 0.02562 * 19 18 17 21 21 C 1.41443 * 120.17716 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99830 * 27.43758 * 21 20 19 23 23 C 1.39936 * 119.99798 * 207.44682 * 21 20 19 24 24 N 1.30828 * 120.00264 * 7.87783 * 23 21 20 25 25 Si 1.86810 * 119.99653 * 187.88113 * 23 21 20 26 26 H 1.48493 * 109.47098 * 59.99681 * 25 23 21 27 27 H 1.48497 * 109.46758 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46544 * 299.99703 * 25 23 21 29 29 C 1.39051 * 120.03128 * 179.72608 * 16 14 13 30 30 H 1.08996 * 109.47407 * 305.24860 * 1 2 3 31 31 H 1.09000 * 109.47437 * 65.25748 * 1 2 3 32 32 H 1.09002 * 109.46411 * 185.25071 * 1 2 3 33 33 H 1.09000 * 109.47105 * 239.99885 * 2 1 3 34 34 H 1.08997 * 109.47241 * 119.99970 * 2 1 3 35 35 H 1.09000 * 109.56353 * 65.66931 * 5 3 2 36 36 H 1.09004 * 109.38232 * 305.63709 * 5 3 2 37 37 H 1.09002 * 109.46097 * 301.21902 * 6 5 3 38 38 H 1.09000 * 109.44895 * 181.25541 * 6 5 3 39 39 H 1.09003 * 109.49239 * 178.68461 * 7 6 5 40 40 H 1.08993 * 109.52416 * 58.60337 * 7 6 5 41 41 H 1.09003 * 109.58875 * 294.85299 * 8 7 6 42 42 H 1.08996 * 109.59145 * 174.42020 * 8 7 6 43 43 H 1.08999 * 109.46409 * 299.71903 * 12 10 9 44 44 H 1.08991 * 109.47267 * 59.71691 * 12 10 9 45 45 H 1.08006 * 119.81822 * 359.96837 * 17 16 14 46 46 H 1.08000 * 119.78861 * 179.97438 * 18 17 16 47 47 H 1.08002 * 119.97105 * 179.97438 * 19 18 17 48 48 H 0.96997 * 119.99697 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.20516 * 0.02562 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7125 1.9481 0.9084 5 6 1.4871 2.1791 -1.2188 6 6 2.1099 3.5749 -1.2945 7 6 3.6273 3.4505 -1.4504 8 6 4.2047 2.7291 -0.2286 9 7 3.5078 1.4461 -0.0639 10 6 4.2017 0.2938 0.0211 11 8 3.6223 -0.7477 0.2463 12 6 5.6981 0.3003 -0.1572 13 8 6.2083 -1.0516 -0.0147 14 6 7.5381 -1.2205 -0.1475 15 8 8.2519 -0.2645 -0.3757 16 6 8.1286 -2.5684 -0.0145 17 6 7.3068 -3.6704 0.2490 18 6 7.8524 -4.9353 0.3742 19 6 9.2102 -5.1254 0.2407 20 6 10.0528 -4.0296 -0.0243 21 6 11.4473 -4.2218 -0.1614 22 1 11.8305 -5.1720 -0.5029 23 6 12.3306 -3.1808 0.1458 24 7 11.8823 -2.0858 0.7040 25 14 14.1498 -3.3546 -0.2414 26 1 14.3279 -3.5573 -1.7017 27 1 14.8650 -2.1226 0.1778 28 1 14.7024 -4.5221 0.4914 29 6 9.5006 -2.7444 -0.1571 30 1 -0.3634 0.5931 0.8392 31 1 -0.3634 0.4301 -0.9333 32 1 -0.3632 -1.0234 0.0941 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.4042 2.2681 -1.1314 36 1 1.7345 1.6209 -2.1218 37 1 1.8825 4.1241 -0.3808 38 1 1.6994 4.1096 -2.1511 39 1 4.0677 4.4446 -1.5276 40 1 3.8555 2.8805 -2.3509 41 1 4.0574 3.3416 0.6609 42 1 5.2692 2.5499 -0.3792 43 1 5.9439 0.6787 -1.1494 44 1 6.1513 0.9414 0.5988 45 1 6.2409 -3.5323 0.3551 46 1 7.2098 -5.7790 0.5780 47 1 9.6286 -6.1161 0.3403 48 1 12.4946 -1.3641 0.9165 49 1 10.1382 -1.8978 -0.3648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051535263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:22 Heat of formation + Delta-G solvation = -113.932357 kcal Electronic energy + Delta-G solvation = -30049.267036 eV Core-core repulsion = 25940.498506 eV Total energy + Delta-G solvation = -4108.768530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97803 -41.25364 -39.25726 -38.53196 -37.35333 -35.61331 -35.34480 -33.93132 -32.32722 -31.37010 -30.45363 -29.86595 -27.29024 -26.13907 -25.17662 -24.73249 -22.86537 -22.32843 -21.98893 -21.54368 -20.24176 -19.68366 -18.33432 -18.11572 -17.81620 -17.38974 -17.16662 -16.57841 -16.41634 -16.28979 -15.60678 -15.44627 -15.29434 -15.14829 -14.89339 -14.64340 -14.49204 -14.38874 -14.17652 -13.89448 -13.67842 -13.55992 -13.49294 -13.05361 -12.92748 -12.80324 -12.62565 -12.58958 -12.23579 -12.11881 -12.06054 -11.96405 -11.88855 -11.72889 -11.59243 -11.57475 -11.42507 -11.37096 -11.13163 -10.17358 -9.67961 -9.64309 -9.41820 -8.60141 -6.43108 0.07819 0.96067 1.16083 1.35245 1.39438 1.47214 1.52305 1.75061 2.12293 2.21135 2.74622 3.23021 3.60506 3.70936 3.79556 3.85046 3.89897 3.95664 3.97866 4.04080 4.22533 4.25055 4.38249 4.39998 4.51818 4.60123 4.60600 4.65939 4.78642 4.82944 4.86195 4.92797 5.02156 5.04099 5.09431 5.11249 5.13618 5.19579 5.26885 5.30002 5.30742 5.38412 5.43590 5.45740 5.68499 5.79448 5.86590 6.02450 6.18436 6.20729 6.52299 6.71891 6.86405 6.88013 6.99649 8.33893 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.002268 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.148934 B =12344.648392 C =13603.574902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.147 3.853 4 H 0.088 0.912 5 C -0.128 4.128 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.093 3.907 9 N -0.601 5.601 10 C 0.519 3.481 11 O -0.544 6.544 12 C 0.039 3.961 13 O -0.338 6.338 14 C 0.519 3.481 15 O -0.535 6.535 16 C -0.132 4.132 17 C -0.178 4.178 18 C -0.103 4.103 19 C -0.196 4.196 20 C 0.061 3.939 21 C -0.490 4.490 22 H 0.087 0.913 23 C 0.025 3.975 24 N -0.835 5.835 25 Si 0.990 3.010 26 H -0.259 1.259 27 H -0.272 1.272 28 H -0.255 1.255 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.287 0.713 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 13.664 -2.518 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.045 3.955 4 H 0.106 0.894 5 C -0.166 4.166 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.029 4.029 9 N -0.336 5.336 10 C 0.306 3.694 11 O -0.422 6.422 12 C -0.038 4.038 13 O -0.254 6.254 14 C 0.366 3.634 15 O -0.427 6.427 16 C -0.133 4.133 17 C -0.198 4.198 18 C -0.121 4.121 19 C -0.216 4.216 20 C 0.059 3.941 21 C -0.520 4.520 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.462 5.462 25 Si 0.810 3.190 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.179 1.179 29 C -0.133 4.133 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.156 0.844 47 H 0.136 0.864 48 H 0.098 0.902 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.690 13.655 -2.362 23.267 hybrid contribution 1.071 0.093 -0.081 1.078 sum -17.619 13.748 -2.443 22.481 Atomic orbital electron populations 1.21903 0.94479 1.01941 1.02565 1.21915 0.95814 0.94833 1.02627 1.21444 0.77145 0.97128 0.99770 0.89445 1.21967 1.01595 0.96398 0.96664 1.21537 0.94471 0.96022 1.03440 1.21940 0.96844 1.01586 0.96889 1.22154 0.97001 0.83287 1.00436 1.48158 1.07429 1.06106 1.71933 1.20061 0.88099 0.84212 0.77075 1.90781 1.69865 1.33181 1.48355 1.22994 0.92711 0.82599 1.05457 1.86625 1.23893 1.32027 1.82822 1.21687 0.79645 0.90120 0.71918 1.90735 1.62105 1.42891 1.46953 1.19066 0.94295 0.89616 1.10341 1.20958 0.98593 0.92120 1.08099 1.20941 0.94862 0.96561 0.99774 1.21553 0.93937 0.98690 1.07394 1.17955 0.94450 0.91245 0.90456 1.19844 0.90968 1.00123 1.41029 0.89453 1.26887 1.06532 0.93603 0.91830 1.69829 1.39325 1.06148 1.30871 0.85125 0.75119 0.78864 0.79850 1.18318 1.19677 1.17934 1.21684 0.91508 0.99279 1.00831 0.91555 0.91527 0.93119 0.93892 0.91888 0.88638 0.92846 0.90406 0.90309 0.88374 0.92430 0.88718 0.89485 0.87152 0.87126 0.85977 0.84395 0.86389 0.90235 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.34 71.98 0.67 -1.72 16 2 C -0.11 -2.56 3.90 30.60 0.12 -2.44 16 3 C 0.15 2.53 3.03 44.83 0.14 2.67 16 4 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.13 -1.58 4.76 30.53 0.15 -1.43 16 6 C -0.12 -1.02 5.89 30.62 0.18 -0.84 16 7 C -0.13 -1.37 6.08 30.67 0.19 -1.19 16 8 C 0.09 1.23 6.35 86.36 0.55 1.78 16 9 N -0.60 -12.11 2.98 -795.80 -2.37 -14.48 16 10 C 0.52 14.84 7.61 87.66 0.67 15.51 16 11 O -0.54 -19.53 12.05 15.75 0.19 -19.34 16 12 C 0.04 1.18 4.30 71.24 0.31 1.49 16 13 O -0.34 -13.65 8.99 -49.73 -0.45 -14.10 16 14 C 0.52 24.12 7.90 70.34 0.56 24.67 16 15 O -0.54 -26.26 16.12 19.95 0.32 -25.94 16 16 C -0.13 -6.63 5.87 -20.14 -0.12 -6.75 16 17 C -0.18 -8.09 9.62 22.71 0.22 -7.87 16 18 C -0.10 -4.43 10.01 22.17 0.22 -4.21 16 19 C -0.20 -9.27 9.78 22.77 0.22 -9.05 16 20 C 0.06 3.31 5.58 -21.32 -0.12 3.19 16 21 C -0.49 -26.12 9.07 23.47 0.21 -25.91 16 22 H 0.09 4.35 7.86 -2.91 -0.02 4.32 16 23 C 0.02 1.27 5.31 85.25 0.45 1.72 16 24 N -0.84 -45.41 10.62 21.82 0.23 -45.18 16 25 Si 0.99 38.60 29.57 68.60 2.03 40.63 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 28 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 29 C -0.11 -6.28 8.22 23.02 0.19 -6.09 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.85 6.83 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 1.19 7.17 -2.39 -0.02 1.17 16 34 H 0.06 1.80 6.31 -2.39 -0.02 1.79 16 35 H 0.10 0.86 6.84 -2.39 -0.02 0.85 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.18 5.93 -2.39 -0.01 1.17 16 43 H 0.11 2.95 7.89 -2.39 -0.02 2.93 16 44 H 0.11 2.96 7.73 -2.39 -0.02 2.94 16 45 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 46 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 47 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 48 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 49 H 0.12 7.12 5.60 -2.91 -0.02 7.10 16 Total: -1.00 -69.35 391.71 5.70 -63.64 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.95 Total: 31.21 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.80 Total: -16.45 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -2.14 Total: -59.66 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: 0.06 Total: -59.37 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -69.35 5.70 -63.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.288 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds