Wall clock time and date at job start Wed Apr 1 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47188 * 2 1 4 4 O 1.20762 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99581 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.70674 * 3.44457 * 5 3 2 7 7 C 1.53194 * 109.58256 * 243.08484 * 5 3 2 8 8 C 1.53045 * 109.31151 * 185.57806 * 7 5 3 9 9 C 1.53036 * 109.53719 * 61.37011 * 8 7 5 10 10 C 1.53629 * 109.24311 * 298.50986 * 9 8 7 11 11 N 1.46927 * 109.58588 * 123.80009 * 5 3 2 12 12 C 1.34775 * 120.63159 * 353.37294 * 11 5 3 13 13 O 1.21279 * 120.00038 * 5.55044 * 12 11 5 14 14 C 1.50697 * 120.00107 * 185.55587 * 12 11 5 15 15 C 1.50698 * 109.47362 * 179.97438 * 14 12 11 16 16 C 1.38314 * 119.96954 * 270.02374 * 15 14 12 17 17 C 1.38285 * 120.14174 * 179.97438 * 16 15 14 18 18 C 1.38118 * 120.06650 * 359.67923 * 17 16 15 19 19 C 1.38858 * 119.92857 * 0.59501 * 18 17 16 20 20 O 1.35757 * 120.06804 * 179.69972 * 19 18 17 21 21 C 1.34830 * 116.99901 * 5.30164 * 20 19 18 22 22 H 1.07998 * 119.99720 * 354.91970 * 21 20 19 23 23 C 1.38656 * 119.99712 * 174.91130 * 21 20 19 24 24 N 1.31549 * 120.00241 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47055 * 120.00075 * 25 23 21 28 28 H 1.48498 * 109.47133 * 240.00364 * 25 23 21 29 29 C 1.38085 * 119.96489 * 89.99935 * 15 14 12 30 30 H 1.09006 * 109.46946 * 59.99740 * 1 2 3 31 31 H 1.08997 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46889 * 300.00390 * 1 2 3 33 33 H 1.09005 * 109.46789 * 239.99619 * 2 1 3 34 34 H 1.08999 * 109.46581 * 120.00200 * 2 1 3 35 35 H 1.08998 * 109.50275 * 305.53197 * 7 5 3 36 36 H 1.09004 * 109.49706 * 65.60034 * 7 5 3 37 37 H 1.09001 * 109.45927 * 181.38601 * 8 7 5 38 38 H 1.08998 * 109.46293 * 301.36375 * 8 7 5 39 39 H 1.09000 * 109.50129 * 58.58040 * 9 8 7 40 40 H 1.09001 * 109.50039 * 178.65169 * 9 8 7 41 41 H 1.09001 * 109.73598 * 295.11970 * 10 9 8 42 42 H 1.09000 * 109.66572 * 174.55103 * 10 9 8 43 43 H 1.09003 * 109.47225 * 59.99569 * 14 12 11 44 44 H 1.08996 * 109.47572 * 299.99704 * 14 12 11 45 45 H 1.07998 * 119.92904 * 359.97438 * 16 15 14 46 46 H 1.08000 * 119.96515 * 179.97438 * 17 16 15 47 47 H 1.08001 * 120.03417 * 180.32105 * 18 17 16 48 48 H 0.97001 * 120.00306 * 179.97438 * 24 23 21 49 49 H 1.08004 * 120.03114 * 0.04572 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2477 2.3387 -0.0005 5 6 3.5140 1.6960 -0.0006 6 1 4.0624 0.7561 -0.0626 7 6 3.9001 2.4320 1.2864 8 6 5.3759 2.8312 1.2178 9 6 5.5956 3.7779 0.0357 10 6 5.2303 3.0527 -1.2685 11 7 3.8571 2.5433 -1.1509 12 6 2.9314 2.8429 -2.0834 13 8 1.7794 2.4974 -1.9272 14 6 3.3277 3.6072 -3.3202 15 6 2.1173 3.8102 -4.1947 16 6 1.7956 2.8713 -5.1581 17 6 0.6854 3.0537 -5.9621 18 6 -0.1096 4.1716 -5.8009 19 6 0.2139 5.1188 -4.8385 20 8 -0.5621 6.2217 -4.6817 21 6 -1.6920 6.2843 -5.4147 22 1 -1.9031 5.5199 -6.1479 23 6 -2.5831 7.3299 -5.2271 24 7 -2.3258 8.2611 -4.3342 25 14 -4.1488 7.4163 -6.2421 26 1 -4.2027 6.2571 -7.1687 27 1 -5.3269 7.3824 -5.3386 28 1 -4.1619 8.6778 -7.0255 29 6 1.3301 4.9332 -4.0331 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2858 3.3262 1.3924 36 1 3.7394 1.7766 2.1424 37 1 5.6596 3.3334 2.1427 38 1 5.9878 1.9388 1.0867 39 1 4.9654 4.6594 0.1534 40 1 6.6422 4.0808 0.0017 41 1 5.9158 2.2211 -1.4317 42 1 5.2914 3.7490 -2.1049 43 1 4.0820 3.0437 -3.8695 44 1 3.7356 4.5764 -3.0334 45 1 2.4128 1.9938 -5.2826 46 1 0.4371 2.3190 -6.7137 47 1 -0.9795 4.3109 -6.4257 48 1 -2.9489 8.9929 -4.2032 49 1 1.5820 5.6662 -3.2809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185829969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:56 Heat of formation + Delta-G solvation = -63.075874 kcal Electronic energy + Delta-G solvation = -30947.487511 eV Core-core repulsion = 26840.924283 eV Total energy + Delta-G solvation = -4106.563228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01794 -39.05301 -38.24961 -37.47955 -36.28647 -33.20196 -32.78347 -32.32542 -32.03776 -31.32417 -29.11845 -27.37685 -26.19571 -25.16401 -24.68176 -23.15899 -21.77838 -21.40521 -20.57205 -19.81399 -18.74533 -17.53851 -17.20433 -16.87775 -16.19127 -16.01613 -15.42745 -15.09250 -14.96410 -14.78555 -14.51498 -14.32311 -14.09371 -14.01712 -13.78011 -13.55033 -13.39097 -13.20917 -13.15613 -12.57515 -12.40384 -12.27976 -12.14498 -11.86205 -11.78291 -11.60775 -11.52549 -11.37628 -11.22002 -11.17025 -11.09802 -11.00909 -10.75616 -10.67355 -10.52408 -10.35925 -9.36439 -9.24621 -9.08125 -8.75635 -8.74161 -7.96818 -7.12324 -6.35534 -3.94335 2.05817 2.24574 2.48145 2.77381 3.10119 3.18131 3.20176 3.25208 3.85544 4.04205 4.39759 4.46490 4.59368 4.63968 4.71616 4.90434 4.94064 5.01168 5.04199 5.10331 5.13964 5.18200 5.24504 5.27916 5.30066 5.40360 5.48981 5.53733 5.59125 5.65218 5.72938 5.73821 5.75771 5.82977 5.87303 6.00294 6.00954 6.01334 6.26248 6.35015 6.37323 6.43313 6.74648 7.00859 7.16306 7.28835 7.35826 7.45474 7.53473 7.85841 7.91959 8.09670 8.37369 9.10271 9.82018 10.82983 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.002814 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.585898 B = 9947.944094 C =10331.078034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.160 4.160 3 C 0.351 3.649 4 O -0.400 6.400 5 C 0.100 3.900 6 H 0.088 0.912 7 C -0.126 4.126 8 C -0.116 4.116 9 C -0.139 4.139 10 C 0.109 3.891 11 N -0.613 5.613 12 C 0.508 3.492 13 O -0.491 6.491 14 C -0.090 4.090 15 C -0.033 4.033 16 C -0.196 4.196 17 C -0.075 4.075 18 C -0.231 4.231 19 C 0.155 3.845 20 O -0.180 6.180 21 C -0.389 4.389 22 H 0.091 0.909 23 C 0.038 3.962 24 N -0.864 5.864 25 Si 0.940 3.060 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.171 4.171 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.126 0.874 48 H 0.268 0.732 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.433 -15.632 9.308 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.221 3.779 4 O -0.268 6.268 5 C -0.004 4.004 6 H 0.106 0.894 7 C -0.164 4.164 8 C -0.153 4.153 9 C -0.177 4.177 10 C -0.013 4.013 11 N -0.351 5.351 12 C 0.297 3.703 13 O -0.364 6.364 14 C -0.129 4.129 15 C -0.033 4.033 16 C -0.215 4.215 17 C -0.094 4.094 18 C -0.250 4.250 19 C 0.102 3.898 20 O -0.084 6.084 21 C -0.466 4.466 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.500 5.500 25 Si 0.765 3.235 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.190 4.190 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.143 0.857 48 H 0.078 0.922 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.236 -14.882 9.600 24.713 hybrid contribution -0.558 -0.061 -0.526 0.769 sum 16.677 -14.943 9.074 24.162 Atomic orbital electron populations 1.21547 0.93610 1.01165 1.03549 1.21912 0.98627 0.95931 1.03328 1.23960 0.89282 0.91355 0.73269 1.90472 1.58042 1.47139 1.31166 1.21709 0.96763 0.94490 0.87437 0.89400 1.21857 0.97451 1.01401 0.95671 1.21481 0.95594 0.99604 0.98657 1.22031 1.02065 0.99073 0.94556 1.21853 0.82216 0.98534 0.98738 1.48049 1.11392 1.52671 1.23005 1.20882 0.85253 0.80079 0.84088 1.90931 1.18135 1.51393 1.75902 1.20612 0.97993 1.01104 0.93239 1.18648 0.94770 0.94508 0.95406 1.20307 1.00650 0.99859 1.00707 1.20657 0.94348 0.96409 0.97939 1.21164 1.03441 0.97095 1.03300 1.19260 0.91041 0.86956 0.92519 1.83980 1.31647 1.33310 1.59489 1.21359 0.96052 1.11121 1.18047 0.89115 1.25272 0.98889 0.95140 0.97283 1.70052 1.36384 1.11561 1.31963 0.85660 0.80286 0.78564 0.78981 1.19135 1.20185 1.20209 1.19932 0.97004 0.99735 1.02326 0.91400 0.92642 0.92483 0.89243 0.89500 0.90505 0.90609 0.91283 0.91606 0.91045 0.90489 0.91216 0.89127 0.88500 0.88532 0.88094 0.87565 0.85665 0.92198 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 37.16 0.34 -1.43 16 2 C -0.16 -1.72 6.28 -27.88 -0.17 -1.90 16 3 C 0.35 4.82 4.19 -29.04 -0.12 4.70 16 4 O -0.40 -7.58 13.44 -19.67 -0.26 -7.85 16 5 C 0.10 1.04 3.24 -68.75 -0.22 0.82 16 6 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 7 C -0.13 -1.10 5.34 -26.61 -0.14 -1.24 16 8 C -0.12 -0.74 5.88 -26.69 -0.16 -0.90 16 9 C -0.14 -0.95 6.10 -26.39 -0.16 -1.11 16 10 C 0.11 0.82 6.35 -3.48 -0.02 0.80 16 11 N -0.61 -7.01 2.97 -166.27 -0.49 -7.50 16 12 C 0.51 7.90 7.51 -10.99 -0.08 7.82 16 13 O -0.49 -9.90 11.09 -20.11 -0.22 -10.12 16 14 C -0.09 -1.27 4.23 -29.04 -0.12 -1.40 16 15 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 16 C -0.20 -3.68 9.70 -39.54 -0.38 -4.06 16 17 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 18 C -0.23 -5.42 9.17 -39.40 -0.36 -5.78 16 19 C 0.16 4.06 6.65 -39.11 -0.26 3.80 16 20 O -0.18 -5.48 9.76 0.03 0.00 -5.48 16 21 C -0.39 -11.48 9.49 30.89 0.29 -11.19 16 22 H 0.09 2.49 5.20 -52.49 -0.27 2.22 16 23 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 24 N -0.86 -26.47 13.67 55.48 0.76 -25.71 16 25 Si 0.94 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.62 5.96 -51.93 -0.31 0.31 16 43 H 0.10 1.05 8.06 -51.93 -0.42 0.63 16 44 H 0.10 1.21 7.41 -51.93 -0.38 0.82 16 45 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 47 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.11 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -37.77 394.96 -9.77 -47.53 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.56 Total: 4.09 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.91 Total: -17.39 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.27 Total: -33.21 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.49 Total: -23.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.77 -9.77 -47.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185829969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.545 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds