Wall clock time and date at job start Wed Apr 1 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46766 * 2 1 4 4 C 1.38288 * 119.92833 * 90.00084 * 3 2 1 5 5 C 1.38110 * 120.06963 * 179.97438 * 4 3 2 6 6 C 1.38871 * 119.92988 * 359.97438 * 5 4 3 7 7 N 1.39925 * 120.07157 * 179.97438 * 6 5 4 8 8 C 1.46759 * 124.34910 * 354.19543 * 7 6 5 9 9 C 1.54479 * 105.47818 * 197.01640 * 8 7 6 10 10 H 1.08996 * 110.97218 * 92.70281 * 9 8 7 11 11 C 1.50704 * 110.97389 * 216.43342 * 9 8 7 12 12 O 1.20825 * 119.99528 * 359.97438 * 11 9 8 13 13 O 1.34229 * 119.99997 * 180.02562 * 11 9 8 14 14 C 1.45201 * 116.99908 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47127 * 329.99954 * 14 13 11 16 16 C 1.50697 * 109.47008 * 209.99980 * 14 13 11 17 17 H 1.07998 * 120.00179 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00109 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99556 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00327 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46864 * 90.00124 * 20 18 16 22 22 H 1.48493 * 109.47128 * 210.00222 * 20 18 16 23 23 H 1.48503 * 109.47119 * 330.00456 * 20 18 16 24 24 C 1.53002 * 109.47143 * 89.99876 * 14 13 11 25 25 C 1.53000 * 109.46978 * 294.99887 * 24 14 13 26 26 C 1.54637 * 101.76092 * 334.58695 * 9 8 7 27 27 C 1.34420 * 124.35167 * 173.90129 * 7 6 5 28 28 O 1.21292 * 124.94172 * 359.56631 * 27 7 6 29 29 C 1.38872 * 119.86084 * 0.25235 * 6 5 4 30 30 C 1.38112 * 119.92589 * 359.52029 * 29 6 5 31 31 H 1.08991 * 109.47287 * 60.00131 * 1 2 3 32 32 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47381 * 299.99786 * 1 2 3 34 34 H 1.08996 * 109.46932 * 240.00403 * 2 1 3 35 35 H 1.09002 * 109.46843 * 120.00041 * 2 1 3 36 36 H 1.08002 * 119.96352 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.03872 * 179.97438 * 5 4 3 38 38 H 1.08997 * 110.25309 * 316.02187 * 8 7 6 39 39 H 1.09005 * 110.24864 * 78.01929 * 8 7 6 40 40 H 0.97006 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47170 * 55.00062 * 24 14 13 42 42 H 1.09002 * 109.46981 * 175.00067 * 24 14 13 43 43 H 1.08997 * 109.47314 * 300.00088 * 25 24 14 44 44 H 1.09002 * 109.47117 * 60.00264 * 25 24 14 45 45 H 1.08996 * 109.46995 * 179.97438 * 25 24 14 46 46 H 1.09006 * 110.48280 * 143.47665 * 26 9 8 47 47 H 1.08993 * 110.48263 * 265.98342 * 26 9 8 48 48 H 1.08000 * 120.03536 * 179.74778 * 29 6 5 49 49 H 1.07999 * 119.96614 * 180.22909 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0713 1.1985 5 6 2.7230 3.3733 1.2019 6 6 2.9559 4.0290 0.0001 7 7 3.4223 5.3482 0.0001 8 6 3.5817 6.1702 1.2054 9 6 3.6868 7.6263 0.7005 10 1 2.7081 8.1058 0.6861 11 6 4.6599 8.4179 1.5357 12 8 5.2323 7.8897 2.4594 13 8 4.8899 9.7101 1.2542 14 6 5.8390 10.4105 2.1009 15 1 5.8197 9.9796 3.1020 16 6 5.4659 11.8687 2.1743 17 1 4.6021 12.2327 1.6379 18 6 6.2272 12.7381 2.9263 19 7 7.2788 12.2946 3.5798 20 14 5.7652 14.5458 3.0167 21 1 4.8389 14.7634 4.1569 22 1 6.9910 15.3608 3.2123 23 1 5.0983 14.9501 1.7530 24 6 7.2450 10.2727 1.5134 25 6 7.6731 8.8044 1.5540 26 6 4.2252 7.4241 -0.7349 27 6 3.7871 6.0237 -1.1033 28 8 3.7659 5.5764 -2.2305 29 6 2.7195 3.3746 -1.2018 30 6 2.2632 2.0710 -1.1984 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0813 1.5606 2.1328 37 1 2.9021 3.8809 2.1381 38 1 2.7143 6.0582 1.8559 39 1 4.4911 5.8886 1.7365 40 1 7.8147 12.9063 4.1086 41 1 7.2432 10.6222 0.4810 42 1 7.9434 10.8711 2.0984 43 1 7.6748 8.4548 2.5864 44 1 6.9746 8.2060 0.9690 45 1 8.6745 8.7062 1.1351 46 1 3.7859 8.1553 -1.4136 47 1 5.3126 7.4977 -0.7484 48 1 2.8958 3.8832 -2.1380 49 1 2.0827 1.5602 -2.1326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187906638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:09 Heat of formation + Delta-G solvation = -105.358983 kcal Electronic energy + Delta-G solvation = -30031.097603 eV Core-core repulsion = 25922.700842 eV Total energy + Delta-G solvation = -4108.396761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45373 -39.83318 -38.99435 -36.90925 -35.88670 -34.67575 -33.62115 -32.33245 -31.42544 -31.13991 -28.70478 -27.98805 -27.38236 -24.84192 -23.94066 -23.24500 -22.44949 -21.45759 -20.53026 -19.90955 -19.48933 -17.96756 -17.64172 -16.79748 -16.43852 -16.11404 -15.72941 -15.43646 -15.13917 -15.01379 -14.61790 -14.40204 -14.03402 -13.96867 -13.78036 -13.64885 -13.39554 -13.38338 -13.12436 -12.91021 -12.73281 -12.25636 -12.10801 -11.76005 -11.68363 -11.62031 -11.54351 -11.32973 -11.29641 -11.25147 -11.09389 -11.01489 -10.75605 -10.37363 -10.23944 -10.01828 -9.85948 -9.66596 -9.48797 -9.12050 -8.91543 -8.53800 -8.00429 -6.26214 -4.33736 1.04599 1.23461 2.36171 2.49464 2.71163 3.19385 3.23745 3.27467 3.36608 3.63625 3.99802 4.15756 4.27395 4.54792 4.57866 4.63606 4.79075 4.82621 4.89453 5.06211 5.07178 5.17128 5.23514 5.26284 5.30596 5.36236 5.45043 5.51993 5.59739 5.62939 5.69424 5.73298 5.85817 5.89175 6.04754 6.12967 6.16857 6.19076 6.34416 6.36278 6.46895 6.75035 6.83367 6.85436 6.90014 7.05594 7.12175 7.52337 7.63560 7.80596 7.82359 8.05641 8.45758 8.77154 9.31869 10.80422 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.002064 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.775431 B =13563.424538 C =13758.056242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.112 4.112 4 C -0.090 4.090 5 C -0.154 4.154 6 C 0.165 3.835 7 N -0.558 5.558 8 C 0.107 3.893 9 C -0.099 4.099 10 H 0.128 0.872 11 C 0.465 3.535 12 O -0.509 6.509 13 O -0.348 6.348 14 C 0.222 3.778 15 H 0.049 0.951 16 C -0.523 4.523 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.911 3.089 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.139 4.139 27 C 0.522 3.478 28 O -0.509 6.509 29 C -0.154 4.154 30 C -0.090 4.090 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.267 0.733 41 H 0.043 0.957 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.034 0.966 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.154 0.846 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 -19.260 -5.939 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.072 3.928 7 N -0.282 5.282 8 C -0.015 4.015 9 C -0.118 4.118 10 H 0.146 0.854 11 C 0.307 3.693 12 O -0.399 6.399 13 O -0.264 6.264 14 C 0.170 3.830 15 H 0.067 0.933 16 C -0.561 4.561 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.524 5.524 20 Si 0.738 3.262 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.175 4.175 25 C -0.200 4.200 26 C -0.179 4.179 27 C 0.312 3.688 28 O -0.384 6.384 29 C -0.174 4.174 30 C -0.108 4.108 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.141 0.859 47 H 0.134 0.866 48 H 0.172 0.828 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.056 -19.498 -6.136 22.781 hybrid contribution -0.018 1.027 0.375 1.093 sum -10.074 -18.472 -5.761 21.815 Atomic orbital electron populations 1.21759 0.94900 1.01520 1.02251 1.20485 0.96028 0.92660 1.02672 1.19863 1.01667 0.96628 0.93166 1.20785 0.98600 0.93796 0.97658 1.20822 1.04490 0.95726 0.96381 1.17790 0.97319 0.82961 0.94748 1.45848 1.61487 1.11397 1.09426 1.22229 1.05156 0.87653 0.86426 1.21845 1.00759 0.94567 0.94663 0.85443 1.22498 0.80811 0.83135 0.82889 1.90636 1.48479 1.70950 1.29799 1.86481 1.60478 1.21339 1.58069 1.20756 0.82878 0.90416 0.88978 0.93350 1.21020 1.13265 0.91052 1.30780 0.91251 1.24885 0.94677 0.99572 0.94777 1.69883 1.16424 1.35679 1.30457 0.86278 0.78021 0.83193 0.78696 1.20390 1.20924 1.19567 1.22036 0.99852 0.94782 1.00802 1.21866 0.98634 0.98407 1.01094 1.22312 1.04722 0.94819 0.96016 1.21018 0.75898 0.88082 0.83803 1.90624 1.53072 1.73291 1.21458 1.21606 1.01891 0.95564 0.98321 1.20899 0.98380 0.93988 0.97572 0.92583 0.92566 0.92565 0.91204 0.91189 0.85752 0.85433 0.88647 0.87834 0.92306 0.93827 0.87221 0.92737 0.95192 0.94677 0.85895 0.86568 0.82842 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.55 16 2 C -0.08 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.11 -1.04 5.14 -104.59 -0.54 -1.58 16 4 C -0.09 -0.84 9.69 -39.61 -0.38 -1.23 16 5 C -0.15 -1.63 9.41 -39.39 -0.37 -2.00 16 6 C 0.17 2.05 6.59 -83.69 -0.55 1.49 16 7 N -0.56 -6.94 3.14 -112.27 -0.35 -7.30 16 8 C 0.11 1.23 5.63 -3.12 -0.02 1.21 16 9 C -0.10 -1.23 3.66 -90.13 -0.33 -1.56 16 10 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.47 8.24 5.64 36.01 0.20 8.44 16 12 O -0.51 -10.14 12.65 -18.75 -0.24 -10.38 16 13 O -0.35 -7.36 9.81 -39.25 -0.38 -7.75 16 14 C 0.22 5.48 2.25 -27.88 -0.06 5.42 16 15 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 16 C -0.52 -13.87 8.90 -34.44 -0.31 -14.18 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 19 N -0.89 -24.08 11.30 55.43 0.63 -23.45 16 20 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 C -0.14 -3.19 5.49 -26.73 -0.15 -3.34 16 25 C -0.14 -2.91 8.57 37.16 0.32 -2.59 16 26 C -0.14 -1.68 6.41 -26.74 -0.17 -1.85 16 27 C 0.52 7.06 7.92 -10.86 -0.09 6.97 16 28 O -0.51 -8.06 14.83 5.55 0.08 -7.98 16 29 C -0.15 -1.91 9.28 -39.39 -0.37 -2.28 16 30 C -0.09 -0.92 9.69 -39.61 -0.38 -1.31 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.18 7.02 -52.49 -0.37 0.81 16 38 H 0.10 0.90 7.70 -51.93 -0.40 0.50 16 39 H 0.10 1.30 6.97 -51.93 -0.36 0.94 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.11 2.82 5.96 -51.93 -0.31 2.51 16 43 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16 44 H 0.03 0.57 6.06 -51.93 -0.31 0.25 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.12 1.47 7.89 -51.93 -0.41 1.06 16 48 H 0.15 2.12 5.28 -52.49 -0.28 1.84 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -30.02 395.29 -9.82 -39.84 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.41 Total: 3.84 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.09 Total: -8.07 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.27 Total: -30.75 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.54 Total: -26.11 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.02 -9.82 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187906638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.517 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds