Wall clock time and date at job start Wed Apr 1 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46766 * 2 1 4 4 C 1.38288 * 119.92833 * 90.00084 * 3 2 1 5 5 C 1.38110 * 120.06963 * 179.97438 * 4 3 2 6 6 C 1.38871 * 119.92988 * 359.97438 * 5 4 3 7 7 N 1.39925 * 120.07157 * 179.97438 * 6 5 4 8 8 C 1.46759 * 124.34910 * 354.19543 * 7 6 5 9 9 C 1.54479 * 105.47818 * 197.01640 * 8 7 6 10 10 H 1.08996 * 110.97218 * 92.70281 * 9 8 7 11 11 C 1.50704 * 110.97389 * 216.43342 * 9 8 7 12 12 O 1.20825 * 119.99528 * 359.97438 * 11 9 8 13 13 O 1.34229 * 119.99997 * 180.02562 * 11 9 8 14 14 C 1.45201 * 116.99908 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47127 * 329.99954 * 14 13 11 16 16 C 1.50697 * 109.47008 * 209.99980 * 14 13 11 17 17 H 1.07998 * 120.00179 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00109 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99556 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00327 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46864 * 90.00124 * 20 18 16 22 22 H 1.48493 * 109.47128 * 210.00222 * 20 18 16 23 23 H 1.48503 * 109.47119 * 330.00456 * 20 18 16 24 24 C 1.53002 * 109.47143 * 89.99876 * 14 13 11 25 25 C 1.53000 * 109.46978 * 294.99887 * 24 14 13 26 26 C 1.54637 * 101.76092 * 334.58695 * 9 8 7 27 27 C 1.34420 * 124.35167 * 173.90129 * 7 6 5 28 28 O 1.21292 * 124.94172 * 359.56631 * 27 7 6 29 29 C 1.38872 * 119.86084 * 0.25235 * 6 5 4 30 30 C 1.38112 * 119.92589 * 359.52029 * 29 6 5 31 31 H 1.08991 * 109.47287 * 60.00131 * 1 2 3 32 32 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47381 * 299.99786 * 1 2 3 34 34 H 1.08996 * 109.46932 * 240.00403 * 2 1 3 35 35 H 1.09002 * 109.46843 * 120.00041 * 2 1 3 36 36 H 1.08002 * 119.96352 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.03872 * 179.97438 * 5 4 3 38 38 H 1.08997 * 110.25309 * 316.02187 * 8 7 6 39 39 H 1.09005 * 110.24864 * 78.01929 * 8 7 6 40 40 H 0.97006 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47170 * 55.00062 * 24 14 13 42 42 H 1.09002 * 109.46981 * 175.00067 * 24 14 13 43 43 H 1.08997 * 109.47314 * 300.00088 * 25 24 14 44 44 H 1.09002 * 109.47117 * 60.00264 * 25 24 14 45 45 H 1.08996 * 109.46995 * 179.97438 * 25 24 14 46 46 H 1.09006 * 110.48280 * 143.47665 * 26 9 8 47 47 H 1.08993 * 110.48263 * 265.98342 * 26 9 8 48 48 H 1.08000 * 120.03536 * 179.74778 * 29 6 5 49 49 H 1.07999 * 119.96614 * 180.22909 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0713 1.1985 5 6 2.7230 3.3733 1.2019 6 6 2.9559 4.0290 0.0001 7 7 3.4223 5.3482 0.0001 8 6 3.5817 6.1702 1.2054 9 6 3.6868 7.6263 0.7005 10 1 2.7081 8.1058 0.6861 11 6 4.6599 8.4179 1.5357 12 8 5.2323 7.8897 2.4594 13 8 4.8899 9.7101 1.2542 14 6 5.8390 10.4105 2.1009 15 1 5.8197 9.9796 3.1020 16 6 5.4659 11.8687 2.1743 17 1 4.6021 12.2327 1.6379 18 6 6.2272 12.7381 2.9263 19 7 7.2788 12.2946 3.5798 20 14 5.7652 14.5458 3.0167 21 1 4.8389 14.7634 4.1569 22 1 6.9910 15.3608 3.2123 23 1 5.0983 14.9501 1.7530 24 6 7.2450 10.2727 1.5134 25 6 7.6731 8.8044 1.5540 26 6 4.2252 7.4241 -0.7349 27 6 3.7871 6.0237 -1.1033 28 8 3.7659 5.5764 -2.2305 29 6 2.7195 3.3746 -1.2018 30 6 2.2632 2.0710 -1.1984 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0813 1.5606 2.1328 37 1 2.9021 3.8809 2.1381 38 1 2.7143 6.0582 1.8559 39 1 4.4911 5.8886 1.7365 40 1 7.8147 12.9063 4.1086 41 1 7.2432 10.6222 0.4810 42 1 7.9434 10.8711 2.0984 43 1 7.6748 8.4548 2.5864 44 1 6.9746 8.2060 0.9690 45 1 8.6745 8.7062 1.1351 46 1 3.7859 8.1553 -1.4136 47 1 5.3126 7.4977 -0.7484 48 1 2.8958 3.8832 -2.1380 49 1 2.0827 1.5602 -2.1326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187906638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:07 Heat of formation + Delta-G solvation = -118.866840 kcal Electronic energy + Delta-G solvation = -30031.683348 eV Core-core repulsion = 25922.700842 eV Total energy + Delta-G solvation = -4108.982506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50831 -41.24694 -39.88804 -38.16938 -37.35402 -35.60384 -35.37207 -33.43323 -33.05112 -31.94548 -29.66898 -29.14390 -28.95909 -26.03289 -24.98777 -24.66497 -23.45569 -22.26060 -22.05340 -21.07008 -20.80531 -19.19075 -18.75538 -18.62587 -17.78573 -17.25230 -16.93509 -16.65492 -16.46913 -16.11983 -15.86261 -15.43646 -15.03390 -14.84469 -14.82345 -14.73339 -14.61053 -14.53288 -14.13878 -14.11928 -13.73352 -13.49339 -13.36448 -13.29220 -13.12967 -12.87488 -12.79725 -12.71272 -12.60231 -12.45090 -12.34734 -12.13157 -11.91734 -11.74394 -11.69927 -11.46359 -11.30217 -11.09948 -10.81515 -10.79786 -10.51032 -9.92995 -8.87436 -8.25791 -6.41609 0.19324 0.42349 1.24842 1.37992 1.43040 1.44795 1.50865 1.57055 1.96593 2.41069 2.81591 2.97262 3.04576 3.15472 3.56039 3.74672 3.90002 3.92028 4.04531 4.09776 4.22635 4.30362 4.37356 4.40002 4.42279 4.45796 4.54142 4.57082 4.58434 4.60856 4.68687 4.73239 4.80614 4.85801 5.07184 5.08295 5.11135 5.12950 5.22430 5.24384 5.35339 5.39849 5.44574 5.51467 5.54177 5.69879 5.72104 5.91116 5.99592 6.07481 6.14227 6.62436 6.79673 6.96047 7.29558 8.80502 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.002064 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.775431 B =13563.424538 C =13758.056242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.109 4.109 4 C -0.091 4.091 5 C -0.156 4.156 6 C 0.140 3.860 7 N -0.555 5.555 8 C 0.112 3.888 9 C -0.085 4.085 10 H 0.158 0.842 11 C 0.463 3.537 12 O -0.532 6.532 13 O -0.355 6.355 14 C 0.227 3.773 15 H 0.012 0.988 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.976 3.024 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.133 4.133 27 C 0.519 3.481 28 O -0.538 6.538 29 C -0.172 4.172 30 C -0.096 4.096 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.269 0.731 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.141 0.859 47 H 0.111 0.889 48 H 0.135 0.865 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 -20.263 -5.901 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.109 4.109 5 C -0.176 4.176 6 C 0.047 3.953 7 N -0.278 5.278 8 C -0.009 4.009 9 C -0.104 4.104 10 H 0.175 0.825 11 C 0.307 3.693 12 O -0.422 6.422 13 O -0.271 6.271 14 C 0.174 3.826 15 H 0.030 0.970 16 C -0.585 4.585 17 H 0.086 0.914 18 C -0.182 4.182 19 N -0.551 5.551 20 Si 0.800 3.200 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.169 4.169 25 C -0.188 4.188 26 C -0.173 4.173 27 C 0.310 3.690 28 O -0.416 6.416 29 C -0.192 4.192 30 C -0.114 4.114 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.159 0.841 47 H 0.129 0.871 48 H 0.152 0.848 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.459 -20.533 -6.089 24.290 hybrid contribution 0.384 1.186 0.389 1.306 sum -11.076 -19.347 -5.701 23.010 Atomic orbital electron populations 1.21745 0.94331 1.02345 1.01849 1.20546 0.96398 0.91080 1.03701 1.20195 1.00364 0.97732 0.92689 1.21139 0.97578 0.93402 0.98801 1.21042 1.04085 0.96285 0.96171 1.18008 0.98738 0.83088 0.95458 1.45856 1.61040 1.11645 1.09210 1.22240 1.05846 0.86598 0.86261 1.21865 1.00312 0.94487 0.93747 0.82485 1.23387 0.80944 0.82020 0.82997 1.90632 1.49498 1.70994 1.31073 1.86460 1.59963 1.23239 1.57438 1.20383 0.84325 0.89992 0.87945 0.96979 1.21332 1.13542 0.92291 1.31292 0.91436 1.25741 0.94462 1.03813 0.94184 1.70006 1.17176 1.37129 1.30813 0.85275 0.77871 0.77926 0.78923 1.19860 1.20408 1.18804 1.21878 0.98657 0.96232 1.00160 1.21726 1.00171 0.96436 1.00445 1.22314 1.04483 0.94578 0.95934 1.21187 0.75674 0.88505 0.83669 1.90615 1.54475 1.73928 1.22600 1.21567 1.03315 0.96606 0.97761 1.21108 0.98061 0.93348 0.98888 0.93231 0.91167 0.92743 0.90488 0.89917 0.83264 0.84158 0.86076 0.88963 0.92139 0.93512 0.89746 0.94334 0.94161 0.92397 0.84114 0.87119 0.84789 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 71.98 0.71 -0.76 16 2 C -0.08 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.11 -1.81 5.14 -19.84 -0.10 -1.91 16 4 C -0.09 -1.49 9.69 22.25 0.22 -1.28 16 5 C -0.16 -3.03 9.41 22.39 0.21 -2.82 16 6 C 0.14 3.37 6.59 38.15 0.25 3.62 16 7 N -0.55 -13.38 3.14 -627.69 -1.97 -15.35 16 8 C 0.11 2.41 5.63 86.83 0.49 2.90 16 9 C -0.08 -1.99 3.66 -10.48 -0.04 -2.03 16 10 H 0.16 2.84 8.14 -2.39 -0.02 2.82 16 11 C 0.46 16.22 5.64 71.24 0.40 16.63 16 12 O -0.53 -21.32 12.65 21.97 0.28 -21.05 16 13 O -0.36 -15.05 9.81 -51.41 -0.50 -15.55 16 14 C 0.23 11.46 2.25 29.85 0.07 11.52 16 15 H 0.01 0.71 7.16 -2.38 -0.02 0.69 16 16 C -0.55 -29.39 8.90 25.60 0.23 -29.16 16 17 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 18 C 0.02 0.95 5.29 84.65 0.45 1.40 16 19 N -0.91 -50.47 11.30 21.45 0.24 -50.23 16 20 Si 0.98 41.50 29.54 68.60 2.03 43.52 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.13 -6.22 5.49 30.59 0.17 -6.06 16 25 C -0.13 -5.33 8.57 71.98 0.62 -4.71 16 26 C -0.13 -3.08 6.41 30.59 0.20 -2.89 16 27 C 0.52 13.87 7.92 87.90 0.70 14.57 16 28 O -0.54 -17.35 14.83 -3.07 -0.05 -17.39 16 29 C -0.17 -4.30 9.28 22.39 0.21 -4.09 16 30 C -0.10 -1.89 9.69 22.25 0.22 -1.67 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.14 2.29 7.02 -2.91 -0.02 2.27 16 38 H 0.12 1.99 7.70 -2.39 -0.02 1.97 16 39 H 0.09 2.24 6.97 -2.38 -0.02 2.23 16 40 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 4.46 5.96 -2.39 -0.01 4.44 16 43 H 0.04 1.67 7.80 -2.39 -0.02 1.65 16 44 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.14 2.75 8.14 -2.38 -0.02 2.73 16 47 H 0.11 2.72 7.89 -2.39 -0.02 2.70 16 48 H 0.13 3.86 5.28 -2.91 -0.02 3.85 16 49 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.52 395.29 6.14 -60.38 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.95 Total: 23.13 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.16 Total: -7.46 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -1.73 Total: -65.58 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.27 Total: -53.99 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -66.52 6.14 -60.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187906638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.490 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds