Wall clock time and date at job start Wed Apr 1 2020 03:36:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46999 * 2 1
4 4 H 1.08994 * 109.47511 * 55.00038 * 3 2 1
5 5 C 1.50701 * 109.47043 * 175.00071 * 3 2 1
6 6 H 1.07998 * 120.00527 * 120.00121 * 5 3 2
7 7 C 1.37879 * 119.99715 * 299.99760 * 5 3 2
8 8 N 1.31520 * 120.00026 * 180.02562 * 7 5 3
9 9 Si 1.86795 * 120.00268 * 359.97438 * 7 5 3
10 10 H 1.48500 * 109.47233 * 89.99954 * 9 7 5
11 11 H 1.48505 * 109.47442 * 210.00407 * 9 7 5
12 12 H 1.48508 * 109.46828 * 330.00217 * 9 7 5
13 13 O 1.45202 * 109.47104 * 294.99482 * 3 2 1
14 14 C 1.34225 * 116.99700 * 90.00603 * 13 3 2
15 15 O 1.20821 * 120.00253 * 359.97438 * 14 13 3
16 16 C 1.50703 * 120.00162 * 180.02562 * 14 13 3
17 17 H 1.08998 * 110.85876 * 62.33053 * 16 14 13
18 18 C 1.54627 * 110.96483 * 298.54240 * 16 14 13
19 19 C 1.51285 * 104.19738 * 217.07997 * 18 16 14
20 20 O 1.21280 * 124.94314 * 196.21659 * 19 18 16
21 21 N 1.34424 * 110.10841 * 16.25598 * 19 18 16
22 22 C 1.46506 * 124.34543 * 180.42914 * 21 19 18
23 23 C 1.50703 * 109.46999 * 269.97499 * 22 21 19
24 24 C 1.38236 * 119.99639 * 269.72402 * 23 22 21
25 25 C 1.38234 * 119.99888 * 179.80619 * 24 23 22
26 26 C 1.38238 * 119.99661 * 0.42700 * 25 24 23
27 27 C 1.50704 * 119.99747 * 179.78360 * 26 25 24
28 28 C 1.38230 * 120.00257 * 359.80592 * 26 25 24
29 29 C 1.38233 * 120.00112 * 0.02562 * 28 26 25
30 30 C 1.46755 * 111.30504 * 0.40398 * 21 19 18
31 31 H 1.09000 * 109.47274 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47300 * 300.00503 * 1 2 3
33 33 H 1.09000 * 109.47099 * 60.00600 * 1 2 3
34 34 H 1.08997 * 109.47300 * 239.99497 * 2 1 3
35 35 H 1.09004 * 109.46688 * 119.99687 * 2 1 3
36 36 H 0.97001 * 119.99955 * 180.02562 * 8 7 5
37 37 H 1.09001 * 110.48777 * 335.76247 * 18 16 14
38 38 H 1.09000 * 110.48903 * 98.40700 * 18 16 14
39 39 H 1.09001 * 109.47138 * 29.97355 * 22 21 19
40 40 H 1.08999 * 109.47185 * 149.97342 * 22 21 19
41 41 H 1.08003 * 120.00128 * 0.02562 * 24 23 22
42 42 H 1.07992 * 120.00049 * 180.20729 * 25 24 23
43 43 H 1.08997 * 109.47099 * 270.02355 * 27 26 25
44 44 H 1.08999 * 109.46769 * 30.02253 * 27 26 25
45 45 H 1.09002 * 109.46695 * 150.01829 * 27 26 25
46 46 H 1.07999 * 120.00429 * 179.97438 * 28 26 25
47 47 H 1.08004 * 120.00331 * 179.97438 * 29 28 26
48 48 H 1.09003 * 110.24283 * 223.98737 * 30 21 19
49 49 H 1.08996 * 110.32158 * 102.02542 * 30 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 0.8417
5 6 3.5419 1.4443 0.1238
6 1 4.1472 1.8888 -0.6522
7 6 4.1432 0.8784 1.2280
8 7 5.4539 0.8804 1.3364
9 14 3.0963 0.1101 2.5708
10 1 2.8743 -1.3259 2.2647
11 1 3.7940 0.2361 3.8756
12 1 1.7880 0.8095 2.6395
13 8 1.6559 2.0916 -1.2408
14 6 0.4728 2.7254 -1.2560
15 8 -0.2192 2.7370 -0.2657
16 6 0.0070 3.4215 -2.5088
17 1 -0.1193 2.7095 -3.3244
18 6 0.9823 4.5530 -2.9082
19 6 0.0832 5.6474 -3.4398
20 8 0.4551 6.5883 -4.1086
21 7 -1.1877 5.4256 -3.0623
22 6 -2.3174 6.2893 -3.4146
23 6 -2.4884 7.3491 -2.3570
24 6 -3.3115 7.1155 -1.2712
25 6 -3.4653 8.0860 -0.2990
26 6 -2.8030 9.2936 -0.4171
27 6 -2.9745 10.3536 0.6404
28 6 -1.9837 9.5291 -1.5052
29 6 -1.8271 8.5572 -2.4757
30 6 -1.2983 4.2068 -2.2523
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 -0.3633 0.5137 -0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 5.8770 0.4819 2.1130
37 1 1.5367 4.9038 -2.0377
38 1 1.6664 4.2107 -3.6847
39 1 -2.1255 6.7640 -4.3769
40 1 -3.2260 5.6907 -3.4795
41 1 -3.8317 6.1733 -1.1807
42 1 -4.1057 7.9022 0.5509
43 1 -3.8147 10.9963 0.3776
44 1 -3.1670 9.8790 1.6026
45 1 -2.0657 10.9519 0.7057
46 1 -1.4665 10.4727 -1.5977
47 1 -1.1873 8.7413 -3.3261
48 1 -2.1602 3.6199 -2.5697
49 1 -1.3841 4.4609 -1.1958
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000187938348.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:36:27
Heat of formation + Delta-G solvation = -97.633517 kcal
Electronic energy + Delta-G solvation = -30382.089731 eV
Core-core repulsion = 26274.027971 eV
Total energy + Delta-G solvation = -4108.061760 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.98789 -39.83347 -39.24785 -36.73475 -35.93825 -34.46516 -33.66396 -32.12356
-31.84297 -31.10675 -28.58770 -27.90778 -27.75205 -25.26230 -23.81318 -22.92433
-22.67928 -21.16792 -21.01401 -19.77136 -19.47377 -17.79905 -17.17556 -16.65562
-16.57386 -16.29605 -15.84491 -15.51533 -15.29440 -15.25465 -14.90013 -14.43833
-14.03257 -13.77394 -13.65827 -13.59130 -13.51703 -13.34455 -12.94904 -12.76982
-12.71877 -12.46031 -12.19818 -12.08124 -12.04810 -11.83580 -11.64324 -11.55099
-11.45402 -11.31709 -11.27473 -11.11366 -10.81509 -10.23119 -10.07253 -9.88317
-9.69624 -9.55818 -9.15176 -9.08981 -8.95415 -8.72831 -8.71131 -6.27815
-4.30797 1.03785 1.24152 2.48877 2.61283 2.75673 3.13682 3.26089
3.27143 3.29270 3.64811 4.13991 4.21090 4.27859 4.52655 4.57300
4.73388 4.74692 4.81829 4.84520 4.91134 5.01180 5.17781 5.24021
5.28613 5.32429 5.34265 5.38616 5.52428 5.53412 5.56295 5.72343
5.75950 5.81660 5.83786 5.88147 5.89721 5.91216 6.21650 6.28129
6.35030 6.39875 6.40653 6.48786 6.58175 6.64438 6.82067 6.91901
6.97377 7.27204 7.44217 8.03591 8.12479 8.47586 8.79339 9.28605
10.84092
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012954 B = 0.002674 C = 0.002531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2161.054990 B =10470.624080 C =11058.041298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.149 4.149
3 C 0.197 3.803
4 H 0.047 0.953
5 C -0.527 4.527
6 H 0.088 0.912
7 C 0.081 3.919
8 N -0.886 5.886
9 Si 0.876 3.124
10 H -0.272 1.272
11 H -0.289 1.289
12 H -0.261 1.261
13 O -0.334 6.334
14 C 0.465 3.535
15 O -0.511 6.511
16 C -0.098 4.098
17 H 0.126 0.874
18 C -0.142 4.142
19 C 0.524 3.476
20 O -0.528 6.528
21 N -0.615 5.615
22 C 0.169 3.831
23 C -0.118 4.118
24 C -0.098 4.098
25 C -0.124 4.124
26 C -0.083 4.083
27 C -0.116 4.116
28 C -0.124 4.124
29 C -0.092 4.092
30 C 0.116 3.884
31 H 0.042 0.958
32 H 0.056 0.944
33 H 0.045 0.955
34 H 0.070 0.930
35 H 0.065 0.935
36 H 0.270 0.730
37 H 0.114 0.886
38 H 0.118 0.882
39 H 0.092 0.908
40 H 0.088 0.912
41 H 0.122 0.878
42 H 0.121 0.879
43 H 0.069 0.931
44 H 0.066 0.934
45 H 0.066 0.934
46 H 0.121 0.879
47 H 0.126 0.874
48 H 0.087 0.913
49 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.680 11.532 -7.083 23.884
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.186 4.186
3 C 0.144 3.856
4 H 0.065 0.935
5 C -0.565 4.565
6 H 0.106 0.894
7 C -0.123 4.123
8 N -0.523 5.523
9 Si 0.705 3.295
10 H -0.199 1.199
11 H -0.216 1.216
12 H -0.185 1.185
13 O -0.249 6.249
14 C 0.306 3.694
15 O -0.401 6.401
16 C -0.117 4.117
17 H 0.144 0.856
18 C -0.182 4.182
19 C 0.312 3.688
20 O -0.404 6.404
21 N -0.349 5.349
22 C 0.048 3.952
23 C -0.119 4.119
24 C -0.117 4.117
25 C -0.142 4.142
26 C -0.083 4.083
27 C -0.172 4.172
28 C -0.142 4.142
29 C -0.110 4.110
30 C -0.007 4.007
31 H 0.061 0.939
32 H 0.075 0.925
33 H 0.064 0.936
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.080 0.920
37 H 0.132 0.868
38 H 0.136 0.864
39 H 0.110 0.890
40 H 0.107 0.893
41 H 0.140 0.860
42 H 0.139 0.861
43 H 0.088 0.912
44 H 0.085 0.915
45 H 0.085 0.915
46 H 0.139 0.861
47 H 0.144 0.856
48 H 0.105 0.895
49 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -19.529 11.988 -7.034 23.970
hybrid contribution -0.429 -0.704 1.024 1.315
sum -19.958 11.284 -6.010 23.702
Atomic orbital electron populations
1.21896 0.96972 1.00074 1.01697 1.22372 0.94354 0.99572 1.02346
1.21018 0.96434 0.88090 0.80081 0.93509 1.20782 0.87643 1.40088
1.07942 0.89403 1.24737 0.94941 0.95264 0.97362 1.69835 1.08499
1.44125 1.29818 0.87008 0.80989 0.80123 0.81363 1.19909 1.21649
1.18521 1.86505 1.33802 1.61998 1.42599 1.22748 0.80953 0.76885
0.88768 1.90627 1.55529 1.58449 1.35495 1.21842 0.95779 0.97595
0.96522 0.85648 1.22322 0.97865 0.93238 1.04736 1.20856 0.82963
0.86298 0.78714 1.90706 1.77886 1.32770 1.39030 1.48339 1.07858
1.25812 1.52937 1.20242 0.88704 0.89986 0.96316 1.20196 0.98700
0.95633 0.97412 1.21035 0.98134 0.98930 0.93594 1.21015 1.00450
0.93483 0.99285 1.19977 0.96763 0.95548 0.96036 1.20809 1.02372
0.97103 0.96933 1.21048 0.99285 0.99525 0.94346 1.21155 0.97887
0.92928 0.99078 1.22019 0.96769 0.84541 0.97387 0.93895 0.92529
0.93628 0.91137 0.91738 0.91998 0.86789 0.86413 0.89012 0.89344
0.86017 0.86056 0.91197 0.91473 0.91491 0.86091 0.85615 0.89456
0.89002
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.71 8.57 37.16 0.32 -2.39 16
2 C -0.15 -3.18 5.15 -26.73 -0.14 -3.32 16
3 C 0.20 4.67 1.84 -27.89 -0.05 4.62 16
4 H 0.05 1.18 6.21 -51.93 -0.32 0.85 16
5 C -0.53 -14.54 9.48 -34.44 -0.33 -14.86 16
6 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16
7 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16
8 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16
9 Si 0.88 21.01 24.41 -169.99 -4.15 16.86 16
10 H -0.27 -6.26 6.83 56.52 0.39 -5.88 16
11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
12 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16
13 O -0.33 -6.91 9.79 -39.24 -0.38 -7.29 16
14 C 0.46 7.96 5.64 36.01 0.20 8.17 16
15 O -0.51 -9.71 12.71 -18.75 -0.24 -9.95 16
16 C -0.10 -1.19 3.66 -90.14 -0.33 -1.52 16
17 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16
18 C -0.14 -1.81 6.40 -26.74 -0.17 -1.98 16
19 C 0.52 7.08 8.02 -10.86 -0.09 6.99 16
20 O -0.53 -8.66 17.60 5.56 0.10 -8.57 16
21 N -0.62 -6.83 2.92 -173.78 -0.51 -7.34 16
22 C 0.17 1.57 6.06 -5.19 -0.03 1.54 16
23 C -0.12 -1.24 5.46 -104.62 -0.57 -1.81 16
24 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16
25 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16
26 C -0.08 -0.82 5.88 -104.62 -0.62 -1.43 16
27 C -0.12 -0.85 10.01 36.01 0.36 -0.49 16
28 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16
29 C -0.09 -1.03 9.70 -39.58 -0.38 -1.42 16
30 C 0.12 1.23 6.67 -3.13 -0.02 1.21 16
31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16
33 H 0.04 0.77 6.06 -51.93 -0.31 0.46 16
34 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16
35 H 0.06 1.44 3.22 -51.93 -0.17 1.28 16
36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
37 H 0.11 1.61 7.89 -51.93 -0.41 1.20 16
38 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16
39 H 0.09 0.86 7.87 -51.93 -0.41 0.46 16
40 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16
41 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16
42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
44 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16
45 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16
46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16
47 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16
48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
49 H 0.09 1.14 7.06 -51.93 -0.37 0.77 16
LS Contribution 396.73 15.07 5.98 5.98
Total: -1.00 -32.68 396.73 -9.01 -41.69
By element:
Atomic # 1 Polarization: 10.65 SS G_CDS: -7.49 Total: 3.16 kcal
Atomic # 6 Polarization: -6.07 SS G_CDS: -3.09 Total: -9.16 kcal
Atomic # 7 Polarization: -32.98 SS G_CDS: 0.27 Total: -32.72 kcal
Atomic # 8 Polarization: -25.28 SS G_CDS: -0.52 Total: -25.81 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -32.68 -9.01 -41.69 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187938348.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.948 kcal
(2) G-P(sol) polarization free energy of solvation -32.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds