Wall clock time and date at job start Wed Apr 1 2020 03:36:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46999 * 2 1
4 4 H 1.08994 * 109.47511 * 55.00038 * 3 2 1
5 5 C 1.50701 * 109.47043 * 175.00071 * 3 2 1
6 6 H 1.07998 * 120.00527 * 120.00121 * 5 3 2
7 7 C 1.37879 * 119.99715 * 299.99760 * 5 3 2
8 8 N 1.31520 * 120.00026 * 180.02562 * 7 5 3
9 9 Si 1.86795 * 120.00268 * 359.97438 * 7 5 3
10 10 H 1.48500 * 109.47233 * 89.99954 * 9 7 5
11 11 H 1.48505 * 109.47442 * 210.00407 * 9 7 5
12 12 H 1.48508 * 109.46828 * 330.00217 * 9 7 5
13 13 O 1.45202 * 109.47104 * 294.99482 * 3 2 1
14 14 C 1.34225 * 116.99700 * 90.00603 * 13 3 2
15 15 O 1.20821 * 120.00253 * 359.97438 * 14 13 3
16 16 C 1.50703 * 120.00162 * 180.02562 * 14 13 3
17 17 H 1.08998 * 110.85876 * 62.33053 * 16 14 13
18 18 C 1.54627 * 110.96483 * 298.54240 * 16 14 13
19 19 C 1.51285 * 104.19738 * 217.07997 * 18 16 14
20 20 O 1.21280 * 124.94314 * 196.21659 * 19 18 16
21 21 N 1.34424 * 110.10841 * 16.25598 * 19 18 16
22 22 C 1.46506 * 124.34543 * 180.42914 * 21 19 18
23 23 C 1.50703 * 109.46999 * 269.97499 * 22 21 19
24 24 C 1.38236 * 119.99639 * 269.72402 * 23 22 21
25 25 C 1.38234 * 119.99888 * 179.80619 * 24 23 22
26 26 C 1.38238 * 119.99661 * 0.42700 * 25 24 23
27 27 C 1.50704 * 119.99747 * 179.78360 * 26 25 24
28 28 C 1.38230 * 120.00257 * 359.80592 * 26 25 24
29 29 C 1.38233 * 120.00112 * 0.02562 * 28 26 25
30 30 C 1.46755 * 111.30504 * 0.40398 * 21 19 18
31 31 H 1.09000 * 109.47274 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47300 * 300.00503 * 1 2 3
33 33 H 1.09000 * 109.47099 * 60.00600 * 1 2 3
34 34 H 1.08997 * 109.47300 * 239.99497 * 2 1 3
35 35 H 1.09004 * 109.46688 * 119.99687 * 2 1 3
36 36 H 0.97001 * 119.99955 * 180.02562 * 8 7 5
37 37 H 1.09001 * 110.48777 * 335.76247 * 18 16 14
38 38 H 1.09000 * 110.48903 * 98.40700 * 18 16 14
39 39 H 1.09001 * 109.47138 * 29.97355 * 22 21 19
40 40 H 1.08999 * 109.47185 * 149.97342 * 22 21 19
41 41 H 1.08003 * 120.00128 * 0.02562 * 24 23 22
42 42 H 1.07992 * 120.00049 * 180.20729 * 25 24 23
43 43 H 1.08997 * 109.47099 * 270.02355 * 27 26 25
44 44 H 1.08999 * 109.46769 * 30.02253 * 27 26 25
45 45 H 1.09002 * 109.46695 * 150.01829 * 27 26 25
46 46 H 1.07999 * 120.00429 * 179.97438 * 28 26 25
47 47 H 1.08004 * 120.00331 * 179.97438 * 29 28 26
48 48 H 1.09003 * 110.24283 * 223.98737 * 30 21 19
49 49 H 1.08996 * 110.32158 * 102.02542 * 30 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 0.8417
5 6 3.5419 1.4443 0.1238
6 1 4.1472 1.8888 -0.6522
7 6 4.1432 0.8784 1.2280
8 7 5.4539 0.8804 1.3364
9 14 3.0963 0.1101 2.5708
10 1 2.8743 -1.3259 2.2647
11 1 3.7940 0.2361 3.8756
12 1 1.7880 0.8095 2.6395
13 8 1.6559 2.0916 -1.2408
14 6 0.4728 2.7254 -1.2560
15 8 -0.2192 2.7370 -0.2657
16 6 0.0070 3.4215 -2.5088
17 1 -0.1193 2.7095 -3.3244
18 6 0.9823 4.5530 -2.9082
19 6 0.0832 5.6474 -3.4398
20 8 0.4551 6.5883 -4.1086
21 7 -1.1877 5.4256 -3.0623
22 6 -2.3174 6.2893 -3.4146
23 6 -2.4884 7.3491 -2.3570
24 6 -3.3115 7.1155 -1.2712
25 6 -3.4653 8.0860 -0.2990
26 6 -2.8030 9.2936 -0.4171
27 6 -2.9745 10.3536 0.6404
28 6 -1.9837 9.5291 -1.5052
29 6 -1.8271 8.5572 -2.4757
30 6 -1.2983 4.2068 -2.2523
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 -0.3633 0.5137 -0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 5.8770 0.4819 2.1130
37 1 1.5367 4.9038 -2.0377
38 1 1.6664 4.2107 -3.6847
39 1 -2.1255 6.7640 -4.3769
40 1 -3.2260 5.6907 -3.4795
41 1 -3.8317 6.1733 -1.1807
42 1 -4.1057 7.9022 0.5509
43 1 -3.8147 10.9963 0.3776
44 1 -3.1670 9.8790 1.6026
45 1 -2.0657 10.9519 0.7057
46 1 -1.4665 10.4727 -1.5977
47 1 -1.1873 8.7413 -3.3261
48 1 -2.1602 3.6199 -2.5697
49 1 -1.3841 4.4609 -1.1958
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000187938348.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:36:26
Heat of formation + Delta-G solvation = -115.564279 kcal
Electronic energy + Delta-G solvation = -30382.867267 eV
Core-core repulsion = 26274.027971 eV
Total energy + Delta-G solvation = -4108.839296 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.13061 -41.07706 -40.12231 -38.10212 -37.23943 -35.58775 -35.20522 -33.90360
-32.83297 -31.85919 -29.87092 -29.19681 -28.80947 -26.16408 -25.10410 -24.33400
-23.63371 -22.51618 -21.93657 -21.21697 -20.48542 -19.32969 -18.48807 -18.20192
-17.97852 -17.30334 -16.96125 -16.66575 -16.51704 -16.15906 -15.98265 -15.70364
-15.32571 -14.88860 -14.77246 -14.61673 -14.50336 -14.42805 -14.33286 -13.94412
-13.85373 -13.60562 -13.47919 -13.37363 -13.14286 -13.08443 -12.88498 -12.74557
-12.57771 -12.53777 -12.43997 -12.13899 -12.00953 -11.84302 -11.61639 -11.49108
-11.31334 -11.12886 -10.94850 -10.72189 -9.87555 -9.85529 -9.49852 -8.43638
-6.52156 0.26970 0.46569 1.22302 1.24577 1.31656 1.40856 1.43171
1.70106 2.08052 2.20054 2.86684 2.88963 3.12709 3.29463 3.71143
3.74861 3.80911 3.86900 4.05421 4.06322 4.10848 4.14022 4.18940
4.22452 4.35748 4.45173 4.50850 4.55461 4.56799 4.61849 4.66512
4.76339 4.78979 4.83350 4.86702 4.92788 4.99959 5.00407 5.07694
5.14236 5.24395 5.35975 5.39559 5.42207 5.46253 5.60517 5.66613
5.69090 5.96968 6.08395 6.16230 6.53063 6.87457 7.01713 7.12955
8.72314
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012954 B = 0.002674 C = 0.002531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2161.054990 B =10470.624080 C =11058.041298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.148 4.148
3 C 0.202 3.798
4 H 0.032 0.968
5 C -0.539 4.539
6 H 0.046 0.954
7 C 0.028 3.972
8 N -0.932 5.932
9 Si 0.938 3.062
10 H -0.251 1.251
11 H -0.288 1.288
12 H -0.252 1.252
13 O -0.348 6.348
14 C 0.462 3.538
15 O -0.526 6.526
16 C -0.085 4.085
17 H 0.162 0.838
18 C -0.143 4.143
19 C 0.521 3.479
20 O -0.564 6.564
21 N -0.605 5.605
22 C 0.167 3.833
23 C -0.129 4.129
24 C -0.102 4.102
25 C -0.135 4.135
26 C -0.092 4.092
27 C -0.114 4.114
28 C -0.139 4.139
29 C -0.112 4.112
30 C 0.120 3.880
31 H 0.072 0.928
32 H 0.047 0.953
33 H 0.055 0.945
34 H 0.074 0.926
35 H 0.056 0.944
36 H 0.274 0.726
37 H 0.094 0.906
38 H 0.127 0.873
39 H 0.087 0.913
40 H 0.125 0.875
41 H 0.144 0.856
42 H 0.140 0.860
43 H 0.083 0.917
44 H 0.074 0.926
45 H 0.068 0.932
46 H 0.129 0.871
47 H 0.112 0.888
48 H 0.129 0.871
49 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.233 10.243 -6.815 26.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.185 4.185
3 C 0.148 3.852
4 H 0.049 0.951
5 C -0.577 4.577
6 H 0.064 0.936
7 C -0.171 4.171
8 N -0.571 5.571
9 Si 0.763 3.237
10 H -0.176 1.176
11 H -0.215 1.215
12 H -0.176 1.176
13 O -0.264 6.264
14 C 0.306 3.694
15 O -0.417 6.417
16 C -0.104 4.104
17 H 0.180 0.820
18 C -0.183 4.183
19 C 0.309 3.691
20 O -0.443 6.443
21 N -0.337 5.337
22 C 0.046 3.954
23 C -0.130 4.130
24 C -0.120 4.120
25 C -0.152 4.152
26 C -0.093 4.093
27 C -0.171 4.171
28 C -0.157 4.157
29 C -0.131 4.131
30 C -0.002 4.002
31 H 0.091 0.909
32 H 0.066 0.934
33 H 0.074 0.926
34 H 0.092 0.908
35 H 0.074 0.926
36 H 0.083 0.917
37 H 0.112 0.888
38 H 0.145 0.855
39 H 0.105 0.895
40 H 0.143 0.857
41 H 0.162 0.838
42 H 0.158 0.842
43 H 0.101 0.899
44 H 0.093 0.907
45 H 0.087 0.913
46 H 0.147 0.853
47 H 0.131 0.869
48 H 0.147 0.853
49 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -23.127 10.698 -6.774 26.367
hybrid contribution 0.703 -0.169 0.894 1.150
sum -22.424 10.529 -5.880 25.461
Atomic orbital electron populations
1.21817 0.94071 1.02111 1.01767 1.22272 0.96896 0.97248 1.02105
1.20650 0.93703 0.89923 0.80954 0.95056 1.21016 0.90002 1.39604
1.07047 0.93591 1.25585 0.96044 0.95706 0.99778 1.69972 1.10495
1.45597 1.31001 0.86008 0.79385 0.80320 0.77965 1.17596 1.21481
1.17591 1.86492 1.36056 1.62806 1.41012 1.23605 0.79497 0.76083
0.90221 1.90618 1.55617 1.58845 1.36571 1.21945 0.95985 0.97613
0.94830 0.82004 1.22298 0.98222 0.93563 1.04230 1.20904 0.83864
0.85844 0.78454 1.90689 1.78611 1.34108 1.40864 1.48380 1.07482
1.25957 1.51903 1.20458 0.89219 0.90040 0.95650 1.20350 0.98920
0.95580 0.98155 1.21322 0.97789 0.99822 0.93070 1.21356 1.00558
0.93401 0.99930 1.20311 0.96295 0.96410 0.96240 1.20847 1.03031
0.96713 0.96482 1.21253 0.99883 0.99896 0.94695 1.21230 0.98550
0.94064 0.99220 1.22108 0.97154 0.84317 0.96617 0.90864 0.93397
0.92614 0.90767 0.92603 0.91661 0.88813 0.85506 0.89466 0.85709
0.83826 0.84224 0.89883 0.90739 0.91308 0.85343 0.86945 0.85347
0.90520
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.62 8.57 71.98 0.62 -4.01 16
2 C -0.15 -6.04 5.15 30.59 0.16 -5.88 16
3 C 0.20 9.54 1.84 29.85 0.05 9.59 16
4 H 0.03 1.58 6.21 -2.39 -0.01 1.56 16
5 C -0.54 -30.70 9.48 25.60 0.24 -30.46 16
6 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16
7 C 0.03 1.62 5.45 84.65 0.46 2.08 16
8 N -0.93 -56.64 13.96 21.45 0.30 -56.34 16
9 Si 0.94 43.11 24.41 68.60 1.67 44.79 16
10 H -0.25 -10.61 6.83 99.48 0.68 -9.93 16
11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16
12 H -0.25 -11.12 6.53 99.48 0.65 -10.48 16
13 O -0.35 -14.29 9.79 -51.37 -0.50 -14.79 16
14 C 0.46 15.13 5.64 71.24 0.40 15.54 16
15 O -0.53 -19.03 12.71 21.98 0.28 -18.76 16
16 C -0.08 -1.84 3.66 -10.48 -0.04 -1.88 16
17 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16
18 C -0.14 -3.58 6.40 30.59 0.20 -3.38 16
19 C 0.52 13.78 8.02 87.90 0.71 14.49 16
20 O -0.56 -18.82 17.60 -3.03 -0.05 -18.87 16
21 N -0.60 -12.15 2.92 -822.32 -2.40 -14.54 16
22 C 0.17 2.74 6.06 85.63 0.52 3.26 16
23 C -0.13 -2.55 5.46 -19.86 -0.11 -2.66 16
24 C -0.10 -1.77 9.70 22.27 0.22 -1.56 16
25 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16
26 C -0.09 -1.73 5.88 -19.86 -0.12 -1.84 16
27 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16
28 C -0.14 -2.92 9.70 22.27 0.22 -2.70 16
29 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16
30 C 0.12 2.16 6.67 86.83 0.58 2.74 16
31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
32 H 0.05 1.66 7.80 -2.39 -0.02 1.64 16
33 H 0.05 1.70 6.06 -2.39 -0.01 1.68 16
34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16
35 H 0.06 2.37 3.22 -2.39 -0.01 2.36 16
36 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16
37 H 0.09 2.74 7.89 -2.39 -0.02 2.72 16
38 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16
39 H 0.09 1.54 7.87 -2.39 -0.02 1.52 16
40 H 0.12 1.15 8.08 -2.39 -0.02 1.13 16
41 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16
42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16
43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
44 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16
45 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16
46 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16
47 H 0.11 2.77 8.06 -2.91 -0.02 2.74 16
48 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16
49 H 0.08 1.69 7.06 -2.39 -0.02 1.68 16
Total: -1.00 -74.06 396.73 5.41 -68.65
By element:
Atomic # 1 Polarization: 20.99 SS G_CDS: 0.86 Total: 21.85 kcal
Atomic # 6 Polarization: -17.24 SS G_CDS: 5.25 Total: -12.00 kcal
Atomic # 7 Polarization: -68.78 SS G_CDS: -2.10 Total: -70.88 kcal
Atomic # 8 Polarization: -52.14 SS G_CDS: -0.28 Total: -52.42 kcal
Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.79 kcal
Total: -74.06 5.41 -68.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187938348.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.910 kcal
(2) G-P(sol) polarization free energy of solvation -74.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.564 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds