Wall clock time and date at job start Wed Apr 1 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.46724 * 2 1 4 4 C 1.38140 * 120.03652 * 264.72033 * 3 2 1 5 5 C 1.38253 * 120.07246 * 180.29885 * 4 3 2 6 6 C 1.38310 * 120.14309 * 359.95938 * 5 4 3 7 7 C 1.38093 * 120.06686 * 0.04218 * 6 5 4 8 8 C 1.38855 * 120.03884 * 85.00299 * 3 2 1 9 9 N 1.39928 * 120.06549 * 359.69709 * 8 3 2 10 10 C 1.46763 * 124.34631 * 89.72862 * 9 8 3 11 11 C 1.54301 * 105.56061 * 196.88273 * 10 9 8 12 12 H 1.08998 * 110.74973 * 93.00248 * 11 10 9 13 13 C 1.50700 * 111.14940 * 216.69692 * 11 10 9 14 14 O 1.20821 * 120.00003 * 354.03210 * 13 11 10 15 15 O 1.34239 * 119.99986 * 174.03485 * 13 11 10 16 16 C 1.45199 * 116.99945 * 179.97438 * 15 13 11 17 17 H 1.09008 * 109.47213 * 29.99786 * 16 15 13 18 18 C 1.50697 * 109.47095 * 150.00070 * 16 15 13 19 19 H 1.08004 * 119.99770 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99964 * 180.02562 * 18 16 15 21 21 N 1.31509 * 120.00115 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 119.99839 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47712 * 59.99148 * 22 20 18 24 24 H 1.48506 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47142 * 299.99161 * 22 20 18 26 26 C 1.53001 * 109.47026 * 270.00343 * 16 15 13 27 27 C 1.52997 * 109.47542 * 65.00002 * 26 16 15 28 28 C 1.54626 * 101.84891 * 334.93655 * 11 10 9 29 29 C 1.34418 * 124.34931 * 270.02421 * 9 8 3 30 30 O 1.21289 * 124.94282 * 359.57860 * 29 9 8 31 31 H 1.08994 * 109.47674 * 299.99893 * 1 2 3 32 32 H 1.09003 * 109.47169 * 60.00426 * 1 2 3 33 33 H 1.09006 * 109.46861 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47456 * 240.00113 * 2 1 3 35 35 H 1.09003 * 109.47169 * 119.99574 * 2 1 3 36 36 H 1.08001 * 119.96139 * 0.25893 * 4 3 2 37 37 H 1.08002 * 119.93066 * 179.97438 * 5 4 3 38 38 H 1.07998 * 119.96637 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.03121 * 179.97438 * 7 6 5 40 40 H 1.08996 * 110.24826 * 316.01808 * 10 9 8 41 41 H 1.09003 * 110.24357 * 78.02012 * 10 9 8 42 42 H 0.96996 * 120.00619 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.46997 * 185.00223 * 26 16 15 44 44 H 1.09000 * 109.46895 * 304.99682 * 26 16 15 45 45 H 1.09000 * 109.47286 * 59.99920 * 27 26 16 46 46 H 1.09004 * 109.46873 * 179.97438 * 27 26 16 47 47 H 1.08998 * 109.46906 * 299.99684 * 27 26 16 48 48 H 1.09002 * 110.48826 * 265.91037 * 28 11 10 49 49 H 1.08998 * 110.48788 * 143.25468 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3664 2.0361 -1.1908 5 6 2.8330 3.3375 -1.1911 6 6 2.9661 4.0279 -0.0001 7 6 2.6338 3.4185 1.1937 8 6 2.1651 2.1111 1.1975 9 7 1.8270 1.4909 2.4054 10 6 2.7615 0.7117 3.2261 11 6 1.8799 -0.1137 4.1865 12 1 1.6699 -1.0980 3.7683 13 6 2.5208 -0.2336 5.5452 14 8 3.6369 0.1921 5.7264 15 8 1.8517 -0.8136 6.5541 16 6 2.5309 -0.8951 7.8348 17 1 3.2156 -0.0531 7.9373 18 6 1.5141 -0.8538 8.9463 19 1 0.4624 -0.7747 8.7133 20 6 1.9263 -0.9170 10.2605 21 7 3.2067 -1.0139 10.5440 22 14 0.6658 -0.8666 11.6381 23 1 -0.2662 -2.0142 11.4987 24 1 1.3604 -0.9498 12.9480 25 1 -0.0991 0.4041 11.5629 26 6 3.3181 -2.2047 7.9121 27 6 4.4320 -2.1930 6.8633 28 6 0.5953 0.7442 4.2546 29 6 0.6033 1.5275 2.9603 30 8 -0.3550 2.1047 2.4917 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2636 1.4997 -2.1225 37 1 3.0941 3.8161 -2.1234 38 1 3.3306 5.0445 -0.0037 39 1 2.7383 3.9579 2.1234 40 1 3.3562 0.0505 2.5958 41 1 3.4112 1.3781 3.7935 42 1 3.4968 -1.0588 11.4685 43 1 3.7554 -2.3078 8.9053 44 1 2.6482 -3.0431 7.7213 45 1 5.1019 -1.3546 7.0541 46 1 4.9931 -3.1259 6.9187 47 1 3.9947 -2.0901 5.8702 48 1 0.6324 1.4196 5.1093 49 1 -0.2869 0.1064 4.3090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187995091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:27 Heat of formation + Delta-G solvation = -116.315873 kcal Electronic energy + Delta-G solvation = -30883.919921 eV Core-core repulsion = 26775.048033 eV Total energy + Delta-G solvation = -4108.871887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40468 -41.21887 -39.80873 -38.04090 -37.19597 -35.51750 -35.10525 -34.18237 -33.25609 -30.88935 -29.95078 -29.26112 -28.89895 -25.90409 -24.95464 -24.55185 -23.71753 -22.31125 -22.08253 -21.09730 -20.61533 -19.12907 -18.63348 -18.45766 -17.86312 -17.19437 -16.92423 -16.77041 -16.54323 -16.28251 -15.75105 -15.45479 -15.09392 -14.92127 -14.75595 -14.61881 -14.51953 -14.37213 -14.22918 -13.97354 -13.80208 -13.35950 -13.27367 -13.17286 -13.08124 -12.85476 -12.74087 -12.71029 -12.58175 -12.50525 -12.34107 -12.15030 -11.84888 -11.80314 -11.72218 -11.47481 -11.35026 -11.04671 -10.80372 -10.50176 -10.05226 -9.83452 -9.62635 -8.25956 -6.41863 0.21215 0.38585 1.27557 1.34250 1.42926 1.45482 1.52740 1.64576 2.03290 2.41079 2.69261 3.04137 3.06807 3.33213 3.68701 3.77301 3.78775 3.87402 4.10626 4.12527 4.27882 4.32387 4.38766 4.42246 4.44803 4.45704 4.51413 4.53157 4.59283 4.61100 4.69951 4.75910 4.79045 4.87280 4.98890 5.03237 5.13148 5.13806 5.25145 5.34367 5.38874 5.42567 5.51687 5.53808 5.55207 5.61674 5.71074 5.80433 6.00563 6.05324 6.15039 6.62252 6.95957 7.00214 7.29399 8.80164 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002528 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.086427 B =11071.453778 C =11340.430936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.082 4.082 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.128 4.128 8 C 0.116 3.884 9 N -0.568 5.568 10 C 0.123 3.877 11 C -0.082 4.082 12 H 0.160 0.840 13 C 0.463 3.537 14 O -0.533 6.533 15 O -0.355 6.355 16 C 0.227 3.773 17 H 0.009 0.991 18 C -0.548 4.548 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.913 5.913 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.271 1.271 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.136 4.136 29 C 0.527 3.473 30 O -0.551 6.551 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.270 0.730 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.103 0.897 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 2.452 -23.658 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.140 4.140 7 C -0.147 4.147 8 C 0.027 3.973 9 N -0.298 5.298 10 C 0.002 3.998 11 C -0.101 4.101 12 H 0.177 0.823 13 C 0.306 3.694 14 O -0.423 6.423 15 O -0.271 6.271 16 C 0.174 3.826 17 H 0.027 0.973 18 C -0.586 4.586 19 H 0.085 0.915 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.205 1.205 25 H -0.196 1.196 26 C -0.169 4.169 27 C -0.187 4.187 28 C -0.176 4.176 29 C 0.317 3.683 30 O -0.429 6.429 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.122 0.878 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.312 2.872 -23.679 23.854 hybrid contribution -0.157 0.353 1.447 1.497 sum -0.470 3.225 -22.232 22.470 Atomic orbital electron populations 1.21780 0.94911 1.02222 1.01768 1.20551 0.95969 0.91604 1.03846 1.20385 0.98241 0.97469 0.92257 1.21311 0.98965 0.95650 0.97456 1.21595 0.97635 0.94436 0.98977 1.21329 0.99998 1.01073 0.91610 1.21498 0.99392 0.94123 0.99672 1.17495 1.02834 0.92550 0.84373 1.45535 1.10969 1.52297 1.21019 1.22060 0.90939 0.94636 0.92193 1.21833 0.95378 1.03843 0.89074 0.82296 1.23454 0.84279 0.74031 0.87638 1.90631 1.21047 1.46559 1.84103 1.86461 1.48459 1.70721 1.21500 1.20370 0.91744 0.94628 0.75896 0.97293 1.21312 0.93945 1.52817 0.90533 0.91528 1.25720 0.97681 0.93894 1.00785 1.69991 1.15575 1.49242 1.20321 0.85353 0.78459 0.79173 0.77181 1.18923 1.20451 1.19590 1.21870 0.96797 0.97318 1.00916 1.21719 0.98302 1.00622 0.98099 1.22293 0.99635 0.99629 0.96072 1.21042 0.81800 0.79710 0.85754 1.90706 1.37829 1.46575 1.67813 0.94222 0.92688 0.91054 0.88707 0.91047 0.83092 0.82736 0.83595 0.86562 0.86821 0.90215 0.92116 0.89845 0.93448 0.94560 0.92185 0.93783 0.87831 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.89 71.98 0.71 -2.10 16 2 C -0.08 -1.36 5.76 29.85 0.17 -1.19 16 3 C -0.08 -1.61 5.15 -19.74 -0.10 -1.71 16 4 C -0.12 -1.76 9.67 22.25 0.22 -1.55 16 5 C -0.11 -1.53 10.04 22.29 0.22 -1.30 16 6 C -0.12 -2.07 10.04 22.25 0.22 -1.84 16 7 C -0.13 -2.87 9.97 22.39 0.22 -2.64 16 8 C 0.12 2.75 5.36 38.15 0.20 2.95 16 9 N -0.57 -13.86 2.06 -628.02 -1.29 -15.15 16 10 C 0.12 2.79 6.24 86.77 0.54 3.33 16 11 C -0.08 -2.00 3.64 -10.54 -0.04 -2.03 16 12 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 13 C 0.46 16.62 5.64 71.24 0.40 17.02 16 14 O -0.53 -21.96 12.72 21.98 0.28 -21.68 16 15 O -0.36 -15.33 9.79 -51.50 -0.50 -15.83 16 16 C 0.23 11.61 2.25 29.85 0.07 11.68 16 17 H 0.01 0.54 7.16 -2.38 -0.02 0.52 16 18 C -0.55 -29.89 8.90 25.60 0.23 -29.66 16 19 H 0.07 3.56 7.81 -2.91 -0.02 3.53 16 20 C 0.02 1.03 5.29 84.66 0.45 1.48 16 21 N -0.91 -50.99 11.29 21.45 0.24 -50.75 16 22 Si 0.97 42.08 29.54 68.60 2.03 44.10 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.13 -6.21 5.49 30.59 0.17 -6.05 16 27 C -0.13 -5.24 8.57 71.98 0.62 -4.63 16 28 C -0.14 -3.45 6.40 30.59 0.20 -3.25 16 29 C 0.53 14.80 6.91 87.90 0.61 15.41 16 30 O -0.55 -19.13 16.32 -3.06 -0.05 -19.18 16 31 H 0.04 0.98 5.36 -2.39 -0.01 0.97 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 35 H 0.07 1.18 7.04 -2.39 -0.02 1.16 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.11 2.03 7.89 -2.39 -0.02 2.02 16 41 H 0.08 2.11 7.05 -2.39 -0.02 2.09 16 42 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.08 4.41 5.95 -2.39 -0.01 4.40 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 45 H 0.04 1.56 7.80 -2.39 -0.02 1.54 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 48 H 0.10 2.91 7.89 -2.39 -0.02 2.89 16 49 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -69.05 395.70 6.76 -62.29 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.95 Total: 22.29 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.11 Total: -6.09 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -1.05 Total: -65.90 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.27 Total: -56.70 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.05 6.76 -62.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187995091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.021 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds