Wall clock time and date at job start Wed Apr 1 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 H 1.08998 * 109.46848 * 304.77833 * 3 2 1 5 5 C 1.50698 * 109.46698 * 184.77870 * 3 2 1 6 6 H 1.08007 * 119.99688 * 245.44605 * 5 3 2 7 7 C 1.37872 * 120.00347 * 65.45667 * 5 3 2 8 8 N 1.31515 * 119.99930 * 9.48451 * 7 5 3 9 9 Si 1.86798 * 120.00185 * 189.49124 * 7 5 3 10 10 H 1.48503 * 109.47432 * 84.98795 * 9 7 5 11 11 H 1.48501 * 109.47076 * 204.99294 * 9 7 5 12 12 H 1.48507 * 109.47008 * 324.98809 * 9 7 5 13 13 O 1.45199 * 109.47125 * 64.77624 * 3 2 1 14 14 C 1.34223 * 117.00312 * 269.99930 * 13 3 2 15 15 O 1.20833 * 119.99629 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00364 * 180.27913 * 14 13 3 17 17 H 1.09002 * 110.85553 * 297.38843 * 16 14 13 18 18 C 1.54628 * 110.96979 * 61.17627 * 16 14 13 19 19 C 1.51284 * 104.19562 * 142.92065 * 18 16 14 20 20 O 1.21286 * 124.93939 * 163.78470 * 19 18 16 21 21 N 1.34420 * 110.11464 * 343.74680 * 19 18 16 22 22 C 1.39922 * 124.35196 * 179.57329 * 21 19 18 23 23 C 1.38892 * 120.07231 * 89.69358 * 22 21 19 24 24 C 1.38092 * 119.92915 * 179.67776 * 23 22 21 25 25 C 1.38299 * 120.07143 * 0.62794 * 24 23 22 26 26 C 1.38262 * 120.14169 * 359.67363 * 25 24 23 27 27 C 1.50702 * 119.96825 * 180.02562 * 26 25 24 28 28 C 1.38142 * 120.06818 * 0.02562 * 26 25 24 29 29 C 1.50698 * 120.03293 * 180.02562 * 28 26 25 30 30 C 1.46762 * 111.30116 * 359.59412 * 21 19 18 31 31 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47242 * 300.00390 * 1 2 3 33 33 H 1.09000 * 109.46934 * 60.00056 * 1 2 3 34 34 H 1.08993 * 109.47077 * 239.99643 * 2 1 3 35 35 H 1.09001 * 109.46571 * 119.99547 * 2 1 3 36 36 H 0.97003 * 120.00111 * 180.02562 * 8 7 5 37 37 H 1.09007 * 110.48517 * 261.59474 * 18 16 14 38 38 H 1.08998 * 110.48345 * 24.23941 * 18 16 14 39 39 H 1.08006 * 120.03593 * 359.97438 * 23 22 21 40 40 H 1.08002 * 119.96635 * 180.30415 * 24 23 22 41 41 H 1.07998 * 119.93291 * 179.69475 * 25 24 23 42 42 H 1.08994 * 109.47331 * 269.98202 * 27 26 25 43 43 H 1.08998 * 109.46652 * 29.98250 * 27 26 25 44 44 H 1.09000 * 109.46721 * 149.97500 * 27 26 25 45 45 H 1.09004 * 109.46796 * 269.97165 * 29 28 26 46 46 H 1.08997 * 109.47624 * 29.97477 * 29 28 26 47 47 H 1.09002 * 109.47250 * 149.97843 * 29 28 26 48 48 H 1.08999 * 110.24622 * 258.01547 * 30 21 19 49 49 H 1.09001 * 110.24506 * 136.01633 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6084 1.9804 -0.8441 5 6 3.5423 1.4441 -0.1184 6 1 4.1479 1.8096 0.6979 7 6 4.1438 0.9792 -1.2686 8 7 3.4144 0.7103 -2.3294 9 14 5.9945 0.7312 -1.3202 10 1 6.3300 -0.6080 -0.7733 11 1 6.4675 0.8251 -2.7248 12 1 6.6574 1.7797 -0.5037 13 8 1.6513 2.0933 1.2384 14 6 0.4682 2.7271 1.2486 15 8 -0.2198 2.7381 0.2552 16 6 0.0009 3.4307 2.4966 17 1 -0.1311 2.7228 3.3148 18 6 0.9792 4.5601 2.8943 19 6 0.0825 5.6604 3.4179 20 8 0.4559 6.6028 4.0838 21 7 -1.1879 5.4419 3.0370 22 6 -2.2648 6.2724 3.3661 23 6 -2.6072 7.3306 2.5341 24 6 -3.6747 8.1444 2.8583 25 6 -4.3945 7.9147 4.0167 26 6 -4.0523 6.8660 4.8502 27 6 -4.8397 6.6189 6.1112 28 6 -2.9894 6.0445 4.5284 29 6 -2.6175 4.9014 5.4372 30 6 -1.3005 4.2199 2.2320 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.8375 0.3828 -3.1386 37 1 1.6593 4.2185 3.6747 38 1 1.5379 4.9048 2.0242 39 1 -2.0422 7.5138 1.6320 40 1 -3.9446 8.9644 2.2093 41 1 -5.2259 8.5555 4.2706 42 1 -4.3938 7.1783 6.9335 43 1 -5.8696 6.9450 5.9662 44 1 -4.8253 5.5545 6.3458 45 1 -1.8919 5.2448 6.1746 46 1 -3.5094 4.5375 5.9472 47 1 -2.1819 4.0950 4.8472 48 1 -1.3809 4.4710 1.1744 49 1 -2.1658 3.6378 2.5490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188023158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:23 Heat of formation + Delta-G solvation = -102.364484 kcal Electronic energy + Delta-G solvation = -30592.014587 eV Core-core repulsion = 26483.747677 eV Total energy + Delta-G solvation = -4108.266910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28309 -39.84512 -39.02924 -36.65854 -35.75497 -33.90522 -33.60984 -33.33622 -31.54469 -30.47004 -27.86878 -27.74070 -27.30867 -26.62358 -24.32586 -23.04991 -22.46055 -21.14358 -20.66475 -19.62317 -19.39833 -17.72131 -17.34963 -16.65274 -16.43006 -16.21043 -15.93851 -15.36216 -15.24158 -14.74851 -14.56554 -14.39685 -14.16808 -13.76099 -13.57980 -13.28469 -13.24935 -13.06383 -13.00703 -12.88216 -12.80244 -12.25025 -12.17775 -12.01648 -11.75526 -11.60233 -11.56879 -11.46687 -11.28836 -11.24690 -11.18048 -11.02234 -10.72198 -10.32932 -10.14419 -9.94304 -9.70838 -9.46470 -9.05211 -8.91982 -8.85304 -8.80211 -8.51921 -6.25983 -4.30041 0.98948 1.11700 2.44494 2.68868 2.77546 3.22338 3.27075 3.29453 3.36132 3.50157 4.15371 4.28305 4.42525 4.52253 4.59455 4.72045 4.78080 4.85570 4.90304 5.01349 5.07464 5.20368 5.23430 5.30787 5.43551 5.45100 5.47924 5.52427 5.54416 5.59430 5.69435 5.77288 5.83912 5.97763 6.09343 6.14913 6.15930 6.24100 6.31112 6.35214 6.41739 6.73995 6.78003 6.84981 6.92379 7.03535 7.09126 7.50077 7.60270 7.78736 8.04592 8.06198 8.49871 8.81640 9.34474 10.82905 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.002395 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.657942 B =11689.119869 C =12042.839929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.220 3.780 4 H 0.055 0.945 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.464 3.536 15 O -0.509 6.509 16 C -0.098 4.098 17 H 0.124 0.876 18 C -0.138 4.138 19 C 0.526 3.474 20 O -0.519 6.519 21 N -0.580 5.580 22 C 0.148 3.852 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.084 4.084 27 C -0.116 4.116 28 C -0.076 4.076 29 C -0.117 4.117 30 C 0.119 3.881 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.267 0.733 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.096 0.904 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 8.818 13.548 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.564 4.564 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.306 3.694 15 O -0.399 6.399 16 C -0.118 4.118 17 H 0.142 0.858 18 C -0.178 4.178 19 C 0.315 3.685 20 O -0.394 6.394 21 N -0.311 5.311 22 C 0.059 3.941 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.085 4.085 27 C -0.172 4.172 28 C -0.077 4.077 29 C -0.174 4.174 30 C -0.003 4.003 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.778 9.249 13.390 22.667 hybrid contribution 0.894 -0.279 -0.449 1.039 sum -14.885 8.970 12.941 21.667 Atomic orbital electron populations 1.21867 0.98047 0.99236 1.00958 1.21934 0.92981 0.99372 1.02390 1.20738 0.95213 0.88520 0.78784 0.92712 1.20970 0.89421 1.44003 1.02011 0.91239 1.24887 0.99124 0.95087 0.94595 1.69981 1.36093 1.43818 1.02251 0.86365 0.84000 0.78954 0.77307 1.20214 1.21069 1.19615 1.86475 1.33508 1.62054 1.44407 1.22568 0.81274 0.77146 0.88416 1.90641 1.55673 1.58465 1.35089 1.21849 0.95412 0.97411 0.97106 0.85792 1.22297 0.97702 0.92996 1.04845 1.20999 0.82395 0.86513 0.78608 1.90734 1.77587 1.32651 1.38436 1.45601 1.06505 1.25632 1.53404 1.17175 0.89781 0.92639 0.94505 1.21356 0.97366 0.94496 0.99677 1.20999 0.95488 0.99543 0.97313 1.21069 1.00089 0.97359 0.94553 1.19651 0.96061 0.95490 0.97272 1.20851 0.99110 1.02651 0.94606 1.19954 0.95158 0.97652 0.94951 1.20828 1.02003 0.95895 0.98634 1.22107 0.97092 0.83907 0.97183 0.94670 0.94753 0.92584 0.89195 0.93550 0.92330 0.86292 0.86523 0.85637 0.85532 0.85798 0.91040 0.91488 0.91040 0.90893 0.90918 0.91422 0.88560 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.56 37.16 0.32 -2.56 16 2 C -0.13 -2.96 5.54 -26.73 -0.15 -3.11 16 3 C 0.22 5.46 2.12 -27.88 -0.06 5.40 16 4 H 0.06 1.53 7.10 -51.93 -0.37 1.16 16 5 C -0.53 -14.07 8.82 -34.44 -0.30 -14.37 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C 0.07 1.76 5.16 -17.82 -0.09 1.67 16 8 N -0.88 -24.46 12.16 55.43 0.67 -23.78 16 9 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.35 -7.44 9.79 -39.24 -0.38 -7.82 16 14 C 0.46 8.36 5.63 36.00 0.20 8.57 16 15 O -0.51 -10.34 12.72 -18.76 -0.24 -10.58 16 16 C -0.10 -1.26 3.66 -90.14 -0.33 -1.59 16 17 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.14 -1.80 6.40 -26.74 -0.17 -1.97 16 19 C 0.53 7.60 7.98 -10.86 -0.09 7.51 16 20 O -0.52 -9.26 17.71 5.55 0.10 -9.16 16 21 N -0.58 -7.39 1.98 -112.27 -0.22 -7.61 16 22 C 0.15 1.86 5.36 -83.70 -0.45 1.41 16 23 C -0.11 -1.28 9.97 -39.39 -0.39 -1.67 16 24 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.11 -1.01 9.70 -39.55 -0.38 -1.39 16 26 C -0.08 -0.80 5.88 -104.65 -0.62 -1.41 16 27 C -0.12 -0.77 9.60 36.01 0.35 -0.42 16 28 C -0.08 -0.84 5.90 -104.43 -0.62 -1.45 16 29 C -0.12 -1.09 9.36 36.00 0.34 -0.76 16 30 C 0.12 1.42 6.20 -3.12 -0.02 1.40 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 33 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16 34 H 0.09 2.26 6.81 -51.93 -0.35 1.91 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.12 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.12 1.62 7.89 -51.93 -0.41 1.21 16 39 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 44 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.53 5.95 -51.93 -0.31 0.22 16 47 H 0.07 0.63 6.94 -51.93 -0.36 0.27 16 48 H 0.10 1.28 7.06 -51.93 -0.37 0.91 16 49 H 0.09 0.89 7.98 -51.93 -0.41 0.48 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -31.59 397.84 -9.34 -40.93 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.38 Total: 2.78 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.86 Total: -6.25 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.45 Total: -31.39 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.52 Total: -27.56 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.59 -9.34 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188023158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.436 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds