Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 H 1.09001 * 109.47282 * 55.00055 * 3 2 1 5 5 C 1.50703 * 109.46554 * 174.99800 * 3 2 1 6 6 H 1.07998 * 119.99493 * 120.00404 * 5 3 2 7 7 C 1.37873 * 120.00369 * 300.00120 * 5 3 2 8 8 N 1.31514 * 119.99775 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00119 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47551 * 89.99850 * 9 7 5 11 11 H 1.48500 * 109.47174 * 210.00050 * 9 7 5 12 12 H 1.48504 * 109.47307 * 329.99664 * 9 7 5 13 13 O 1.45200 * 109.47151 * 294.99604 * 3 2 1 14 14 C 1.34229 * 116.99360 * 90.00373 * 13 3 2 15 15 O 1.20820 * 120.00352 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99560 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47379 * 300.00146 * 16 14 13 18 18 C 1.50697 * 109.47170 * 60.00179 * 16 14 13 19 19 C 1.38238 * 120.00110 * 60.41653 * 18 16 14 20 20 C 1.38231 * 120.00196 * 179.79325 * 19 18 16 21 21 C 1.38236 * 119.99965 * 0.43434 * 20 19 18 22 22 C 1.38239 * 120.00076 * 359.81802 * 21 20 19 23 23 C 1.38237 * 119.99969 * 240.68897 * 18 16 14 24 24 N 1.46505 * 109.47130 * 179.97438 * 16 14 13 25 25 C 1.45748 * 117.94537 * 297.56590 * 24 16 14 26 26 C 1.52929 * 110.48826 * 160.92330 * 25 24 16 27 27 C 1.53353 * 108.67086 * 50.75031 * 26 25 24 28 28 C 1.53068 * 108.42347 * 292.46982 * 27 26 25 29 29 C 1.33236 * 117.97832 * 117.63682 * 24 16 14 30 30 O 1.21275 * 118.16239 * 2.21254 * 29 24 16 31 31 H 1.09003 * 109.46853 * 59.99804 * 1 2 3 32 32 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46896 * 299.99916 * 1 2 3 34 34 H 1.09003 * 109.47130 * 239.99923 * 2 1 3 35 35 H 1.08994 * 109.47027 * 120.00136 * 2 1 3 36 36 H 0.97008 * 119.99826 * 180.02562 * 8 7 5 37 37 H 1.07997 * 119.99879 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.00514 * 180.27291 * 20 19 18 39 39 H 1.07996 * 120.00514 * 179.83715 * 21 20 19 40 40 H 1.07998 * 120.00372 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00130 * 359.97438 * 23 18 16 42 42 H 1.09000 * 109.30469 * 40.61287 * 25 24 16 43 43 H 1.09003 * 109.30348 * 281.22959 * 25 24 16 44 44 H 1.09001 * 109.60128 * 290.99706 * 26 25 24 45 45 H 1.08991 * 109.60524 * 170.50434 * 26 25 24 46 46 H 1.08997 * 109.66957 * 172.73912 * 27 26 25 47 47 H 1.08996 * 109.67132 * 52.20437 * 27 26 25 48 48 H 1.08999 * 109.40089 * 169.02840 * 28 27 26 49 49 H 1.08996 * 109.40239 * 288.85607 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4418 2.1139 2.0849 11 1 6.4395 -0.3100 2.1549 12 1 6.6136 0.8414 0.0278 13 8 1.6560 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2191 2.7370 -0.2656 16 6 0.0076 3.4226 -2.5084 17 1 0.7246 4.1969 -2.7809 18 6 -0.1012 2.4216 -3.6296 19 6 -0.9623 1.3462 -3.5150 20 6 -1.0652 0.4304 -4.5453 21 6 -0.3004 0.5848 -5.6864 22 6 0.5646 1.6573 -5.7988 23 6 0.6643 2.5756 -4.7703 24 7 -1.3031 4.0321 -2.2698 25 6 -2.4173 3.1506 -1.9446 26 6 -3.5472 3.9388 -1.2805 27 6 -3.8670 5.1630 -2.1470 28 6 -2.6707 6.1165 -2.0975 29 6 -1.4028 5.3573 -2.3650 30 8 -0.4148 5.9843 -2.6836 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8293 -0.0604 2.9503 37 1 -1.5568 1.2233 -2.6218 38 1 -1.7412 -0.4074 -4.4577 39 1 -0.3788 -0.1321 -6.4902 40 1 1.1618 1.7783 -6.6905 41 1 1.3400 3.4135 -4.8582 42 1 -2.0736 2.3713 -1.2644 43 1 -2.7897 2.6883 -2.8588 44 1 -3.2322 4.2646 -0.2892 45 1 -4.4325 3.3086 -1.1968 46 1 -4.7531 5.6655 -1.7592 47 1 -4.0434 4.8485 -3.1756 48 1 -2.7944 6.8922 -2.8532 49 1 -2.6155 6.5774 -1.1113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188041607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = -95.021208 kcal Electronic energy + Delta-G solvation = -32304.574371 eV Core-core repulsion = 28196.625890 eV Total energy + Delta-G solvation = -4107.948481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21037 -39.43551 -38.84712 -36.60351 -35.85436 -34.47355 -33.52084 -31.51525 -31.22837 -30.92648 -29.73766 -27.74256 -26.94937 -24.69328 -23.32896 -22.88925 -22.12663 -21.99824 -20.72929 -19.50400 -18.72947 -17.42545 -17.01616 -16.89058 -16.38815 -16.30620 -15.87792 -15.41813 -15.09628 -14.76853 -14.62628 -14.44234 -14.14698 -13.99586 -13.58720 -13.52260 -13.23015 -12.95456 -12.84003 -12.59283 -12.40812 -12.10095 -11.80805 -11.60294 -11.46499 -11.35624 -11.28445 -11.20046 -11.09962 -11.01219 -10.92654 -10.82086 -10.66954 -10.28336 -9.98154 -9.77168 -9.69023 -9.40271 -8.90134 -8.81953 -8.79151 -8.60735 -8.45746 -6.19038 -4.25647 1.27401 1.43796 2.54304 2.77648 2.91712 3.25051 3.30653 3.34904 3.61795 3.97890 4.33630 4.43261 4.59734 4.60639 4.66327 4.68206 4.88443 5.00559 5.11536 5.13274 5.25821 5.26820 5.37492 5.48517 5.50224 5.54045 5.61306 5.64344 5.69163 5.71187 5.83124 5.93435 6.03944 6.07513 6.17689 6.21972 6.26422 6.40295 6.44709 6.51509 6.57991 6.83967 6.90531 6.98542 7.12797 7.20932 7.41054 7.60556 7.71790 7.90961 8.10568 8.14342 8.58938 8.87099 9.39505 10.87742 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004008 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.807538 B = 6984.667580 C = 7892.700907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.223 3.777 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.346 6.346 14 C 0.452 3.548 15 O -0.508 6.508 16 C 0.175 3.825 17 H 0.143 0.857 18 C -0.085 4.085 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.090 4.090 24 N -0.573 5.573 25 C 0.101 3.899 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.129 4.129 29 C 0.521 3.479 30 O -0.555 6.555 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 3.518 -12.672 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.261 6.261 14 C 0.293 3.707 15 O -0.398 6.398 16 C 0.069 3.931 17 H 0.160 0.840 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.108 4.108 24 N -0.305 5.305 25 C -0.021 4.021 26 C -0.172 4.172 27 C -0.161 4.161 28 C -0.169 4.169 29 C 0.310 3.690 30 O -0.434 6.434 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.118 0.882 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.004 3.736 -12.310 19.764 hybrid contribution 0.920 -0.228 0.427 1.040 sum -14.084 3.509 -11.883 18.758 Atomic orbital electron populations 1.21882 0.98568 0.98968 1.00547 1.21996 0.92541 0.99302 1.03361 1.20700 0.95088 0.88712 0.78465 0.93599 1.21045 0.89656 1.38878 1.06273 0.91311 1.24864 0.99221 0.94717 0.95034 1.69889 1.35362 1.37946 1.09439 0.86294 0.83922 0.77693 0.78394 1.20387 1.20941 1.19549 1.86501 1.33534 1.61877 1.44149 1.23223 0.81462 0.77134 0.88877 1.90575 1.55546 1.58302 1.35383 1.19425 0.87797 0.95746 0.90119 0.83979 1.19516 0.98448 0.95860 0.94768 1.21297 0.98344 0.93881 0.99186 1.21073 0.99974 0.98874 0.93831 1.21165 0.96436 0.97790 0.97889 1.21102 0.98962 0.94877 0.98840 1.21042 0.97946 0.99328 0.92514 1.46892 1.08695 1.06288 1.68599 1.21830 0.86348 0.93818 1.00101 1.21879 0.98117 0.97231 0.99971 1.21677 0.97520 0.95992 1.00920 1.21627 0.91655 0.98631 1.04984 1.20201 0.91021 0.81517 0.76267 1.90705 1.38005 1.66419 1.48266 0.94974 0.94819 0.92884 0.93970 0.87337 0.92421 0.85614 0.85952 0.86111 0.85830 0.85530 0.88785 0.91460 0.90395 0.89748 0.90522 0.91145 0.88169 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16 2 C -0.13 -3.29 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.91 2.25 -27.88 -0.06 5.85 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.41 16 9 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 O -0.35 -8.31 9.73 -39.26 -0.38 -8.69 16 14 C 0.45 9.47 5.11 36.01 0.18 9.66 16 15 O -0.51 -11.22 11.59 -18.74 -0.22 -11.43 16 16 C 0.17 3.00 2.77 -70.23 -0.19 2.80 16 17 H 0.14 2.58 6.33 -51.93 -0.33 2.26 16 18 C -0.08 -1.29 4.87 -104.62 -0.51 -1.80 16 19 C -0.11 -1.51 7.30 -39.58 -0.29 -1.80 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.09 -1.24 9.67 -39.58 -0.38 -1.63 16 24 N -0.57 -8.53 2.47 -170.05 -0.42 -8.95 16 25 C 0.10 1.23 4.05 -4.48 -0.02 1.22 16 26 C -0.13 -1.26 6.02 -26.59 -0.16 -1.42 16 27 C -0.12 -0.98 6.03 -26.51 -0.16 -1.14 16 28 C -0.13 -1.32 6.04 -28.10 -0.17 -1.49 16 29 C 0.52 7.79 7.46 -11.92 -0.09 7.70 16 30 O -0.56 -10.27 15.94 5.56 0.09 -10.18 16 31 H 0.03 0.63 5.19 -51.93 -0.27 0.36 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 1.16 7.80 -51.93 -0.40 0.76 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.13 1.70 4.65 -52.49 -0.24 1.46 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.63 7.95 -52.49 -0.42 1.21 16 42 H 0.09 1.35 5.09 -51.93 -0.26 1.09 16 43 H 0.07 0.71 6.59 -51.93 -0.34 0.37 16 44 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -32.48 383.92 -9.96 -42.44 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.15 Total: 6.02 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.27 Total: -6.80 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.21 Total: -33.36 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.51 Total: -30.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.48 -9.96 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188041607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.578 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds