Wall clock time and date at job start Wed Apr 1 2020 03:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 H 1.09001 * 109.47282 * 55.00055 * 3 2 1 5 5 C 1.50703 * 109.46554 * 174.99800 * 3 2 1 6 6 H 1.07998 * 119.99493 * 120.00404 * 5 3 2 7 7 C 1.37873 * 120.00369 * 300.00120 * 5 3 2 8 8 N 1.31514 * 119.99775 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00119 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47551 * 89.99850 * 9 7 5 11 11 H 1.48500 * 109.47174 * 210.00050 * 9 7 5 12 12 H 1.48504 * 109.47307 * 329.99664 * 9 7 5 13 13 O 1.45200 * 109.47151 * 294.99604 * 3 2 1 14 14 C 1.34229 * 116.99360 * 90.00373 * 13 3 2 15 15 O 1.20820 * 120.00352 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99560 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47379 * 300.00146 * 16 14 13 18 18 C 1.50697 * 109.47170 * 60.00179 * 16 14 13 19 19 C 1.38238 * 120.00110 * 60.41653 * 18 16 14 20 20 C 1.38231 * 120.00196 * 179.79325 * 19 18 16 21 21 C 1.38236 * 119.99965 * 0.43434 * 20 19 18 22 22 C 1.38239 * 120.00076 * 359.81802 * 21 20 19 23 23 C 1.38237 * 119.99969 * 240.68897 * 18 16 14 24 24 N 1.46505 * 109.47130 * 179.97438 * 16 14 13 25 25 C 1.45748 * 117.94537 * 297.56590 * 24 16 14 26 26 C 1.52929 * 110.48826 * 160.92330 * 25 24 16 27 27 C 1.53353 * 108.67086 * 50.75031 * 26 25 24 28 28 C 1.53068 * 108.42347 * 292.46982 * 27 26 25 29 29 C 1.33236 * 117.97832 * 117.63682 * 24 16 14 30 30 O 1.21275 * 118.16239 * 2.21254 * 29 24 16 31 31 H 1.09003 * 109.46853 * 59.99804 * 1 2 3 32 32 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46896 * 299.99916 * 1 2 3 34 34 H 1.09003 * 109.47130 * 239.99923 * 2 1 3 35 35 H 1.08994 * 109.47027 * 120.00136 * 2 1 3 36 36 H 0.97008 * 119.99826 * 180.02562 * 8 7 5 37 37 H 1.07997 * 119.99879 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.00514 * 180.27291 * 20 19 18 39 39 H 1.07996 * 120.00514 * 179.83715 * 21 20 19 40 40 H 1.07998 * 120.00372 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00130 * 359.97438 * 23 18 16 42 42 H 1.09000 * 109.30469 * 40.61287 * 25 24 16 43 43 H 1.09003 * 109.30348 * 281.22959 * 25 24 16 44 44 H 1.09001 * 109.60128 * 290.99706 * 26 25 24 45 45 H 1.08991 * 109.60524 * 170.50434 * 26 25 24 46 46 H 1.08997 * 109.66957 * 172.73912 * 27 26 25 47 47 H 1.08996 * 109.67132 * 52.20437 * 27 26 25 48 48 H 1.08999 * 109.40089 * 169.02840 * 28 27 26 49 49 H 1.08996 * 109.40239 * 288.85607 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4418 2.1139 2.0849 11 1 6.4395 -0.3100 2.1549 12 1 6.6136 0.8414 0.0278 13 8 1.6560 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2191 2.7370 -0.2656 16 6 0.0076 3.4226 -2.5084 17 1 0.7246 4.1969 -2.7809 18 6 -0.1012 2.4216 -3.6296 19 6 -0.9623 1.3462 -3.5150 20 6 -1.0652 0.4304 -4.5453 21 6 -0.3004 0.5848 -5.6864 22 6 0.5646 1.6573 -5.7988 23 6 0.6643 2.5756 -4.7703 24 7 -1.3031 4.0321 -2.2698 25 6 -2.4173 3.1506 -1.9446 26 6 -3.5472 3.9388 -1.2805 27 6 -3.8670 5.1630 -2.1470 28 6 -2.6707 6.1165 -2.0975 29 6 -1.4028 5.3573 -2.3650 30 8 -0.4148 5.9843 -2.6836 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8293 -0.0604 2.9503 37 1 -1.5568 1.2233 -2.6218 38 1 -1.7412 -0.4074 -4.4577 39 1 -0.3788 -0.1321 -6.4902 40 1 1.1618 1.7783 -6.6905 41 1 1.3400 3.4135 -4.8582 42 1 -2.0736 2.3713 -1.2644 43 1 -2.7897 2.6883 -2.8588 44 1 -3.2322 4.2646 -0.2892 45 1 -4.4325 3.3086 -1.1968 46 1 -4.7531 5.6655 -1.7592 47 1 -4.0434 4.8485 -3.1756 48 1 -2.7944 6.8922 -2.8532 49 1 -2.6155 6.5774 -1.1113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188041607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:37 Heat of formation + Delta-G solvation = -112.135735 kcal Electronic energy + Delta-G solvation = -32305.316513 eV Core-core repulsion = 28196.625890 eV Total energy + Delta-G solvation = -4108.690623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50985 -40.98198 -39.95465 -37.99338 -37.35673 -35.68316 -35.45298 -33.40171 -32.34030 -31.92624 -30.69336 -29.50064 -28.44060 -25.76403 -25.19055 -23.86632 -23.45102 -22.99974 -22.23973 -21.28557 -19.76349 -19.12300 -18.64990 -18.03392 -17.89879 -17.62017 -17.30411 -16.95150 -16.60541 -16.11596 -15.87209 -15.55263 -15.16450 -15.05241 -14.89491 -14.73408 -14.59803 -14.40999 -14.03680 -13.94508 -13.64741 -13.53211 -13.35653 -13.26339 -13.14334 -12.86625 -12.73717 -12.59978 -12.46273 -12.17309 -12.13206 -12.00768 -11.87218 -11.77810 -11.75232 -11.56638 -11.40703 -10.86278 -10.80699 -10.56678 -9.99189 -9.81390 -9.75790 -8.31194 -6.47841 0.25343 0.45775 1.17684 1.26432 1.38936 1.39845 1.51635 1.65280 2.17302 2.39295 2.89909 2.98354 3.38003 3.50976 3.74172 3.81733 3.87006 3.90543 3.92165 4.07258 4.19713 4.26076 4.34993 4.38710 4.41423 4.48849 4.53311 4.54454 4.58832 4.65430 4.78903 4.83154 4.89500 4.95395 4.99956 5.05705 5.06761 5.10607 5.17151 5.19334 5.33851 5.35013 5.47058 5.49576 5.54919 5.57113 5.63599 5.91274 6.04311 6.07090 6.29486 6.54569 6.86494 6.95891 7.23146 8.75402 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004008 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.807538 B = 6984.667580 C = 7892.700907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C 0.228 3.772 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.977 3.023 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.448 3.552 15 O -0.523 6.523 16 C 0.183 3.817 17 H 0.123 0.877 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.110 4.110 24 N -0.572 5.572 25 C 0.097 3.903 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.125 4.125 29 C 0.508 3.492 30 O -0.601 6.601 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.271 0.729 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.998 2.500 -14.467 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.591 4.591 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.800 3.200 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.189 1.189 13 O -0.274 6.274 14 C 0.291 3.709 15 O -0.413 6.413 16 C 0.077 3.923 17 H 0.141 0.859 18 C -0.106 4.106 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.128 4.128 24 N -0.303 5.303 25 C -0.024 4.024 26 C -0.169 4.169 27 C -0.150 4.150 28 C -0.164 4.164 29 C 0.300 3.700 30 O -0.483 6.483 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.141 0.859 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.135 0.865 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.704 2.710 -14.105 22.030 hybrid contribution 1.405 0.094 0.972 1.712 sum -15.298 2.805 -13.133 20.356 Atomic orbital electron populations 1.21723 0.95891 1.00750 1.00189 1.21810 0.94883 0.97552 1.02099 1.20396 0.94440 0.89455 0.78189 0.97743 1.21315 0.90658 1.40179 1.06980 0.92167 1.25735 1.04098 0.93751 0.94253 1.69998 1.37349 1.37794 1.09738 0.85267 0.77878 0.78140 0.78676 1.19911 1.19557 1.18928 1.86489 1.35380 1.62663 1.42837 1.24071 0.80232 0.76481 0.90129 1.90554 1.55594 1.58788 1.36385 1.19251 0.88821 0.95429 0.88807 0.85896 1.19444 1.00296 0.96336 0.94556 1.21372 0.98443 0.94132 1.00028 1.21434 1.00147 0.98848 0.93244 1.21605 0.95031 0.97705 0.98369 1.21443 0.99084 0.94294 0.98897 1.21200 0.98189 1.00295 0.93147 1.47120 1.08316 1.06784 1.68105 1.22008 0.86247 0.93421 1.00721 1.21922 0.97830 0.98156 0.98978 1.21676 0.97241 0.94689 1.01391 1.21729 0.90000 0.98909 1.05740 1.21251 0.92278 0.81377 0.75135 1.90675 1.40024 1.67237 1.50380 0.94061 0.91811 0.94511 0.93964 0.89558 0.91943 0.85851 0.83203 0.82695 0.83241 0.85885 0.91321 0.89445 0.92124 0.86831 0.87392 0.90072 0.86515 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.57 71.98 0.62 -4.84 16 2 C -0.13 -6.36 5.49 30.60 0.17 -6.19 16 3 C 0.23 12.77 2.25 29.85 0.07 12.84 16 4 H 0.00 0.30 7.16 -2.39 -0.02 0.28 16 5 C -0.55 -32.54 8.90 25.60 0.23 -32.31 16 6 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.02 1.22 5.29 84.65 0.45 1.67 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.98 43.96 29.54 68.60 2.03 45.98 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 O -0.36 -18.25 9.73 -51.41 -0.50 -18.75 16 14 C 0.45 19.95 5.11 71.24 0.36 20.31 16 15 O -0.52 -24.49 11.59 21.98 0.25 -24.23 16 16 C 0.18 6.67 2.77 43.50 0.12 6.79 16 17 H 0.12 4.91 6.33 -2.39 -0.02 4.89 16 18 C -0.11 -3.26 4.87 -19.87 -0.10 -3.36 16 19 C -0.12 -3.28 7.30 22.27 0.16 -3.11 16 20 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 21 C -0.11 -2.10 10.05 22.27 0.22 -1.87 16 22 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 23 C -0.11 -3.07 9.67 22.27 0.22 -2.85 16 24 N -0.57 -17.57 2.47 -811.18 -2.01 -19.58 16 25 C 0.10 2.34 4.05 86.50 0.35 2.69 16 26 C -0.13 -2.23 6.02 30.69 0.18 -2.05 16 27 C -0.11 -1.46 6.03 30.74 0.19 -1.27 16 28 C -0.12 -2.38 6.04 29.71 0.18 -2.20 16 29 C 0.51 15.59 7.46 87.73 0.65 16.24 16 30 O -0.60 -23.44 15.94 -3.01 -0.05 -23.49 16 31 H 0.04 1.65 5.19 -2.39 -0.01 1.64 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 34 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 4.77 5.95 -2.39 -0.01 4.75 16 36 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.12 3.30 4.65 -2.91 -0.01 3.29 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.12 3.37 7.95 -2.91 -0.02 3.35 16 42 H 0.07 2.02 5.09 -2.39 -0.01 2.00 16 43 H 0.09 1.74 6.59 -2.39 -0.02 1.72 16 44 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.93 8.13 -2.39 -0.02 0.92 16 48 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -75.33 383.92 5.45 -69.88 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.96 Total: 26.72 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.52 Total: -4.21 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.76 Total: -71.90 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -0.29 Total: -66.47 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.33 5.45 -69.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188041607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.253 kcal (2) G-P(sol) polarization free energy of solvation -75.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds