Wall clock time and date at job start Wed Apr 1 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47112 * 2 1 4 4 C 1.53000 * 109.87539 * 185.56775 * 3 2 1 5 5 O 1.42904 * 109.46771 * 58.33179 * 4 3 2 6 6 C 1.54326 * 110.00614 * 64.46905 * 3 2 1 7 7 C 1.55162 * 102.93943 * 218.31768 * 6 3 2 8 8 C 1.54907 * 101.57830 * 35.50557 * 7 6 3 9 9 N 1.47023 * 109.87783 * 306.58628 * 3 2 1 10 10 C 1.34773 * 125.64919 * 298.46930 * 9 3 2 11 11 O 1.21726 * 119.99779 * 5.59245 * 10 9 3 12 12 C 1.46250 * 119.99808 * 185.58951 * 10 9 3 13 13 C 1.35026 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.46964 * 119.99965 * 179.97438 * 13 12 10 15 15 C 1.40021 * 120.10223 * 359.72583 * 14 13 12 16 16 C 1.37597 * 119.89924 * 179.73798 * 15 14 13 17 17 C 1.39179 * 120.09745 * 0.51294 * 16 15 14 18 18 O 1.35575 * 119.89807 * 179.73881 * 17 16 15 19 19 C 1.34781 * 117.00053 * 174.28480 * 18 17 16 20 20 H 1.07994 * 119.99783 * 5.06638 * 19 18 17 21 21 C 1.38712 * 119.99691 * 185.06581 * 19 18 17 22 22 N 1.31503 * 120.00474 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46809 * 60.00202 * 23 21 19 25 25 H 1.48495 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47015 * 300.00137 * 23 21 19 27 27 C 1.39175 * 120.20503 * 359.76145 * 17 16 15 28 28 C 1.37594 * 120.10279 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.46688 * 184.90618 * 1 2 3 30 30 H 1.08995 * 109.47240 * 304.90827 * 1 2 3 31 31 H 1.08998 * 109.46795 * 64.91248 * 1 2 3 32 32 H 1.08999 * 109.47893 * 240.00180 * 2 1 3 33 33 H 1.09002 * 109.47316 * 119.99400 * 2 1 3 34 34 H 1.09002 * 109.46848 * 298.33333 * 4 3 2 35 35 H 1.08995 * 109.46957 * 178.33077 * 4 3 2 36 36 H 0.96700 * 113.99729 * 179.97438 * 5 4 3 37 37 H 1.08998 * 110.72510 * 336.68124 * 6 3 2 38 38 H 1.09004 * 110.72060 * 99.96036 * 6 3 2 39 39 H 1.08993 * 111.00096 * 277.42908 * 7 6 3 40 40 H 1.08999 * 111.03373 * 153.59170 * 7 6 3 41 41 H 1.09003 * 110.36511 * 204.15056 * 8 7 6 42 42 H 1.08999 * 110.36972 * 81.83156 * 8 7 6 43 43 H 1.07996 * 120.00600 * 0.02562 * 12 10 9 44 44 H 1.08003 * 119.99752 * 359.97438 * 13 12 10 45 45 H 1.08003 * 120.04659 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.95174 * 180.27593 * 16 15 14 47 47 H 0.97004 * 120.00408 * 180.02562 * 22 21 19 48 48 H 1.07996 * 119.95108 * 179.97438 * 27 17 16 49 49 H 1.08002 * 120.05678 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5636 1.4556 -0.1396 5 8 3.9368 0.7898 -1.3477 6 6 1.6267 2.1487 1.3085 7 6 1.2726 3.5825 0.8327 8 6 0.6408 3.3028 -0.5537 9 7 1.4297 2.1886 -1.1102 10 6 1.5690 1.9019 -2.4197 11 8 2.1631 0.8963 -2.7627 12 6 1.0064 2.7989 -3.4285 13 6 1.1456 2.5114 -4.7405 14 6 0.5797 3.4124 -5.7542 15 6 -0.1091 4.5667 -5.3619 16 6 -0.6325 5.4102 -6.3147 17 6 -0.4874 5.1120 -7.6664 18 8 -1.0093 5.9433 -8.6016 19 6 -0.7341 5.6634 -9.8910 20 1 -0.1920 4.7644 -10.1446 21 6 -1.1471 6.5300 -10.8922 22 7 -1.8067 7.6249 -10.5834 23 14 -0.7651 6.1425 -12.6793 24 1 -1.3870 4.8455 -13.0483 25 1 -1.3100 7.2178 -13.5464 26 1 0.7059 6.0564 -12.8636 27 6 0.1915 3.9629 -8.0609 28 6 0.7230 3.1164 -7.1153 29 1 -0.3633 -1.0240 0.0879 30 1 -0.3633 0.5881 0.8427 31 1 -0.3633 0.4357 -0.9307 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.0108 0.9420 0.7115 35 1 3.9169 2.4863 -0.1687 36 1 4.8910 0.7604 -1.5019 37 1 0.7567 1.6632 1.7507 38 1 2.4575 2.1707 2.0139 39 1 2.1691 4.1950 0.7373 40 1 0.5518 4.0503 1.5033 41 1 0.7234 4.1822 -1.1925 42 1 -0.4033 3.0102 -0.4429 43 1 0.4796 3.6912 -3.1243 44 1 1.6727 1.6192 -5.0448 45 1 -0.2260 4.7964 -4.3131 46 1 -1.1600 6.3030 -6.0131 47 1 -2.0959 8.2308 -11.2836 48 1 0.3014 3.7353 -9.1109 49 1 1.2500 2.2251 -7.4224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189169535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:32 Heat of formation + Delta-G solvation = -65.467471 kcal Electronic energy + Delta-G solvation = -29850.544596 eV Core-core repulsion = 25743.877661 eV Total energy + Delta-G solvation = -4106.666935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64860 -39.15555 -37.76501 -36.73763 -36.24142 -33.50425 -32.92142 -32.20565 -31.62179 -30.39020 -29.45146 -28.09297 -25.67925 -25.36523 -23.99943 -23.14928 -22.37156 -22.02009 -20.98087 -19.30365 -18.36048 -17.81992 -17.41520 -17.07467 -16.75381 -16.32686 -15.44250 -14.90399 -14.81528 -14.76678 -14.43855 -14.20781 -14.18064 -13.79402 -13.74469 -13.48710 -13.34565 -13.04983 -12.91078 -12.65591 -12.51459 -12.26747 -12.17689 -11.86545 -11.73958 -11.71827 -11.53582 -11.44528 -11.16373 -11.08005 -11.01018 -10.82822 -10.69276 -10.63591 -10.50759 -9.95454 -9.50967 -9.45560 -9.34337 -8.81817 -8.48254 -8.34416 -7.05821 -6.61714 -4.16985 1.19164 2.16759 2.66898 3.05871 3.06347 3.08154 3.09789 3.74712 3.84970 4.03135 4.22902 4.35953 4.55188 4.62825 4.79233 4.93894 4.95729 5.05774 5.07854 5.09066 5.13972 5.18899 5.31668 5.32260 5.34567 5.36243 5.50412 5.52781 5.57624 5.62511 5.70937 5.72343 5.77513 5.87498 5.90379 6.04608 6.11671 6.17707 6.25950 6.46268 6.51629 6.62747 6.72340 6.84173 6.96354 7.17506 7.27888 7.33256 7.65783 7.67897 7.76792 7.83549 8.62213 8.83086 9.50561 10.54998 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.001915 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.472489 B =14619.357833 C =15131.702913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.172 3.828 4 C 0.071 3.929 5 O -0.530 6.530 6 C -0.127 4.127 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.611 5.611 10 C 0.566 3.434 11 O -0.511 6.511 12 C -0.273 4.273 13 C 0.029 3.971 14 C -0.194 4.194 15 C -0.045 4.045 16 C -0.199 4.199 17 C 0.166 3.834 18 O -0.164 6.164 19 C -0.393 4.393 20 H 0.096 0.904 21 C 0.042 3.958 22 N -0.854 5.854 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 C -0.242 4.242 28 C -0.037 4.037 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.362 0.638 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.274 0.726 48 H 0.131 0.869 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 -9.324 22.809 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.087 3.913 4 C -0.008 4.008 5 O -0.332 6.332 6 C -0.164 4.164 7 C -0.172 4.172 8 C -0.024 4.024 9 N -0.347 5.347 10 C 0.359 3.641 11 O -0.387 6.387 12 C -0.294 4.294 13 C 0.009 3.991 14 C -0.195 4.195 15 C -0.063 4.063 16 C -0.218 4.218 17 C 0.110 3.890 18 O -0.065 6.065 19 C -0.469 4.469 20 H 0.113 0.887 21 C -0.164 4.164 22 N -0.487 5.487 23 Si 0.768 3.232 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 C -0.261 4.261 28 C -0.055 4.055 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.207 0.793 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.084 0.916 48 H 0.148 0.852 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.556 -9.521 22.322 25.138 hybrid contribution 0.747 0.091 -0.711 1.035 sum 7.303 -9.429 21.612 24.684 Atomic orbital electron populations 1.21735 0.95806 1.01048 1.01717 1.21791 0.96033 0.95372 1.03213 1.20926 0.91173 0.92783 0.86460 1.22501 0.94648 0.95760 0.87925 1.87031 1.26679 1.79306 1.40222 1.22735 1.02428 0.95674 0.95598 1.22785 1.01522 0.96600 0.96291 1.22294 0.95306 0.90330 0.94429 1.48310 1.51197 1.30444 1.04754 1.17967 0.79692 0.85777 0.80650 1.90814 1.41346 1.26917 1.79673 1.22536 1.10861 1.02793 0.93207 1.22242 0.89682 0.95228 0.91924 1.18482 1.09568 0.98797 0.92624 1.20862 0.94792 0.92714 0.97948 1.20140 1.08887 1.02652 0.90149 1.19603 0.90135 0.89481 0.89817 1.83904 1.61017 1.46093 1.15510 1.21408 1.37996 1.08760 0.78731 0.88655 1.25376 0.95984 0.94757 1.00330 1.70002 1.33720 1.10434 1.34519 0.85727 0.79212 0.78569 0.79690 1.19275 1.20117 1.19276 1.21096 1.07188 0.97461 1.00327 1.20984 0.95546 0.97258 0.91749 0.93116 0.93059 0.92623 0.89248 0.92172 0.93779 0.94148 0.79255 0.89605 0.90245 0.90674 0.89831 0.90417 0.91562 0.86351 0.86027 0.86586 0.86203 0.91606 0.85174 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.47 37.16 0.35 -1.09 16 2 C -0.13 -1.33 4.72 -26.73 -0.13 -1.46 16 3 C 0.17 1.68 0.50 -130.84 -0.07 1.62 16 4 C 0.07 0.69 5.96 37.16 0.22 0.91 16 5 O -0.53 -6.55 9.36 -59.52 -0.56 -7.10 16 6 C -0.13 -0.83 5.83 -24.89 -0.15 -0.97 16 7 C -0.13 -0.83 7.09 -24.58 -0.17 -1.01 16 8 C 0.10 0.86 6.63 -2.53 -0.02 0.84 16 9 N -0.61 -7.03 1.93 -157.48 -0.30 -7.34 16 10 C 0.57 8.47 7.04 -13.04 -0.09 8.38 16 11 O -0.51 -9.08 12.16 -19.13 -0.23 -9.31 16 12 C -0.27 -4.01 8.87 -37.51 -0.33 -4.34 16 13 C 0.03 0.46 9.45 -37.19 -0.35 0.11 16 14 C -0.19 -3.42 5.87 -105.02 -0.62 -4.03 16 15 C -0.04 -0.79 9.40 -39.15 -0.37 -1.16 16 16 C -0.20 -4.06 9.97 -39.47 -0.39 -4.45 16 17 C 0.17 3.87 6.66 -38.88 -0.26 3.61 16 18 O -0.16 -4.51 9.74 0.72 0.01 -4.50 16 19 C -0.39 -10.58 9.48 30.91 0.29 -10.28 16 20 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.85 -24.11 13.67 55.48 0.76 -23.35 16 23 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.24 -5.10 9.14 -39.47 -0.36 -5.46 16 28 C -0.04 -0.68 9.78 -39.15 -0.38 -1.06 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.41 6.21 -51.93 -0.32 0.09 16 31 H 0.05 0.66 7.50 -51.93 -0.39 0.28 16 32 H 0.09 1.27 6.30 -51.93 -0.33 0.94 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.36 3.07 9.12 45.56 0.42 3.48 16 37 H 0.09 0.51 6.03 -51.93 -0.31 0.20 16 38 H 0.08 0.41 7.83 -51.93 -0.41 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.66 6.94 -51.93 -0.36 0.30 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.12 1.55 4.75 -52.49 -0.25 1.30 16 44 H 0.12 1.96 7.52 -52.48 -0.39 1.56 16 45 H 0.12 1.69 6.16 -52.48 -0.32 1.36 16 46 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.13 2.72 5.62 -52.49 -0.29 2.42 16 49 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -32.44 389.67 -8.57 -41.01 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.18 Total: 8.84 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.91 Total: -18.84 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.45 Total: -30.69 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.78 Total: -20.92 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.44 -8.57 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189169535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.453 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds