Wall clock time and date at job start Wed Apr 1 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47112 * 2 1 4 4 C 1.53000 * 109.87539 * 185.56775 * 3 2 1 5 5 O 1.42904 * 109.46771 * 58.33179 * 4 3 2 6 6 C 1.54326 * 110.00614 * 64.46905 * 3 2 1 7 7 C 1.55162 * 102.93943 * 218.31768 * 6 3 2 8 8 C 1.54907 * 101.57830 * 35.50557 * 7 6 3 9 9 N 1.47023 * 109.87783 * 306.58628 * 3 2 1 10 10 C 1.34773 * 125.64919 * 298.46930 * 9 3 2 11 11 O 1.21726 * 119.99779 * 5.59245 * 10 9 3 12 12 C 1.46250 * 119.99808 * 185.58951 * 10 9 3 13 13 C 1.35026 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.46964 * 119.99965 * 179.97438 * 13 12 10 15 15 C 1.40021 * 120.10223 * 359.72583 * 14 13 12 16 16 C 1.37597 * 119.89924 * 179.73798 * 15 14 13 17 17 C 1.39179 * 120.09745 * 0.51294 * 16 15 14 18 18 O 1.35575 * 119.89807 * 179.73881 * 17 16 15 19 19 C 1.34781 * 117.00053 * 174.28480 * 18 17 16 20 20 H 1.07994 * 119.99783 * 5.06638 * 19 18 17 21 21 C 1.38712 * 119.99691 * 185.06581 * 19 18 17 22 22 N 1.31503 * 120.00474 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46809 * 60.00202 * 23 21 19 25 25 H 1.48495 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47015 * 300.00137 * 23 21 19 27 27 C 1.39175 * 120.20503 * 359.76145 * 17 16 15 28 28 C 1.37594 * 120.10279 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.46688 * 184.90618 * 1 2 3 30 30 H 1.08995 * 109.47240 * 304.90827 * 1 2 3 31 31 H 1.08998 * 109.46795 * 64.91248 * 1 2 3 32 32 H 1.08999 * 109.47893 * 240.00180 * 2 1 3 33 33 H 1.09002 * 109.47316 * 119.99400 * 2 1 3 34 34 H 1.09002 * 109.46848 * 298.33333 * 4 3 2 35 35 H 1.08995 * 109.46957 * 178.33077 * 4 3 2 36 36 H 0.96700 * 113.99729 * 179.97438 * 5 4 3 37 37 H 1.08998 * 110.72510 * 336.68124 * 6 3 2 38 38 H 1.09004 * 110.72060 * 99.96036 * 6 3 2 39 39 H 1.08993 * 111.00096 * 277.42908 * 7 6 3 40 40 H 1.08999 * 111.03373 * 153.59170 * 7 6 3 41 41 H 1.09003 * 110.36511 * 204.15056 * 8 7 6 42 42 H 1.08999 * 110.36972 * 81.83156 * 8 7 6 43 43 H 1.07996 * 120.00600 * 0.02562 * 12 10 9 44 44 H 1.08003 * 119.99752 * 359.97438 * 13 12 10 45 45 H 1.08003 * 120.04659 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.95174 * 180.27593 * 16 15 14 47 47 H 0.97004 * 120.00408 * 180.02562 * 22 21 19 48 48 H 1.07996 * 119.95108 * 179.97438 * 27 17 16 49 49 H 1.08002 * 120.05678 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5636 1.4556 -0.1396 5 8 3.9368 0.7898 -1.3477 6 6 1.6267 2.1487 1.3085 7 6 1.2726 3.5825 0.8327 8 6 0.6408 3.3028 -0.5537 9 7 1.4297 2.1886 -1.1102 10 6 1.5690 1.9019 -2.4197 11 8 2.1631 0.8963 -2.7627 12 6 1.0064 2.7989 -3.4285 13 6 1.1456 2.5114 -4.7405 14 6 0.5797 3.4124 -5.7542 15 6 -0.1091 4.5667 -5.3619 16 6 -0.6325 5.4102 -6.3147 17 6 -0.4874 5.1120 -7.6664 18 8 -1.0093 5.9433 -8.6016 19 6 -0.7341 5.6634 -9.8910 20 1 -0.1920 4.7644 -10.1446 21 6 -1.1471 6.5300 -10.8922 22 7 -1.8067 7.6249 -10.5834 23 14 -0.7651 6.1425 -12.6793 24 1 -1.3870 4.8455 -13.0483 25 1 -1.3100 7.2178 -13.5464 26 1 0.7059 6.0564 -12.8636 27 6 0.1915 3.9629 -8.0609 28 6 0.7230 3.1164 -7.1153 29 1 -0.3633 -1.0240 0.0879 30 1 -0.3633 0.5881 0.8427 31 1 -0.3633 0.4357 -0.9307 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.0108 0.9420 0.7115 35 1 3.9169 2.4863 -0.1687 36 1 4.8910 0.7604 -1.5019 37 1 0.7567 1.6632 1.7507 38 1 2.4575 2.1707 2.0139 39 1 2.1691 4.1950 0.7373 40 1 0.5518 4.0503 1.5033 41 1 0.7234 4.1822 -1.1925 42 1 -0.4033 3.0102 -0.4429 43 1 0.4796 3.6912 -3.1243 44 1 1.6727 1.6192 -5.0448 45 1 -0.2260 4.7964 -4.3131 46 1 -1.1600 6.3030 -6.0131 47 1 -2.0959 8.2308 -11.2836 48 1 0.3014 3.7353 -9.1109 49 1 1.2500 2.2251 -7.4224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189169535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:32 Heat of formation + Delta-G solvation = -84.504255 kcal Electronic energy + Delta-G solvation = -29851.370093 eV Core-core repulsion = 25743.877661 eV Total energy + Delta-G solvation = -4107.492432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51501 -40.82784 -38.95784 -38.27858 -37.06101 -34.75630 -34.24890 -33.73143 -32.44205 -31.97104 -30.21883 -29.55852 -27.51176 -26.07944 -25.14228 -24.13932 -23.70545 -23.05350 -22.15039 -20.58394 -19.84077 -19.02241 -18.76433 -18.30642 -17.82202 -17.11935 -16.54414 -16.44293 -16.13705 -15.98989 -15.64901 -15.60408 -15.36225 -15.03958 -14.82937 -14.64297 -14.57946 -14.17267 -14.00036 -13.88659 -13.58256 -13.41199 -13.27338 -13.15027 -13.03824 -12.81402 -12.67850 -12.55506 -12.24858 -12.20882 -12.15848 -12.09476 -11.87042 -11.54632 -11.33760 -11.22062 -11.08229 -10.73874 -10.53297 -10.50817 -9.90259 -9.41095 -8.66422 -8.51922 -6.18244 -0.19738 0.57292 1.19558 1.35388 1.47706 1.51171 2.15375 2.16462 2.52442 2.87380 3.17695 3.36490 3.41927 3.57961 3.69978 3.88071 3.94370 4.01323 4.07457 4.17045 4.23833 4.31683 4.34078 4.39427 4.47358 4.48675 4.50633 4.63341 4.65845 4.67792 4.72456 4.89266 4.94069 5.00197 5.03371 5.05070 5.13890 5.15606 5.18731 5.23523 5.28107 5.33903 5.39862 5.47751 5.57912 5.62913 5.77907 5.82489 5.97088 6.09643 6.76714 6.92156 6.98926 7.50546 7.69169 8.69869 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.001915 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.472489 B =14619.357833 C =15131.702913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.161 3.839 4 C 0.067 3.933 5 O -0.560 6.560 6 C -0.119 4.119 7 C -0.125 4.125 8 C 0.087 3.913 9 N -0.607 5.607 10 C 0.555 3.445 11 O -0.544 6.544 12 C -0.240 4.240 13 C 0.007 3.993 14 C -0.167 4.167 15 C -0.040 4.040 16 C -0.204 4.204 17 C 0.129 3.871 18 O -0.219 6.219 19 C -0.418 4.418 20 H 0.105 0.895 21 C -0.018 4.018 22 N -0.914 5.914 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.257 1.257 27 C -0.247 4.247 28 C -0.042 4.042 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.374 0.626 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.155 0.845 46 H 0.124 0.876 47 H 0.275 0.725 48 H 0.125 0.875 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 -10.484 26.493 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.076 3.924 4 C -0.012 4.012 5 O -0.365 6.365 6 C -0.156 4.156 7 C -0.163 4.163 8 C -0.035 4.035 9 N -0.341 5.341 10 C 0.347 3.653 11 O -0.423 6.423 12 C -0.261 4.261 13 C -0.013 4.013 14 C -0.168 4.168 15 C -0.057 4.057 16 C -0.224 4.224 17 C 0.077 3.923 18 O -0.124 6.124 19 C -0.494 4.494 20 H 0.122 0.878 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.267 4.267 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.221 0.779 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.173 0.827 46 H 0.142 0.858 47 H 0.084 0.916 48 H 0.143 0.857 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.606 -10.709 26.096 29.216 hybrid contribution 0.597 0.162 -1.271 1.413 sum 8.203 -10.548 24.825 28.193 Atomic orbital electron populations 1.21695 0.95306 1.01461 1.01339 1.21719 0.96400 0.95919 1.02075 1.21257 0.91270 0.92464 0.87425 1.22660 0.94728 0.95992 0.87826 1.87002 1.28020 1.79805 1.41706 1.22762 1.03612 0.95314 0.93932 1.22786 1.02038 0.96510 0.94921 1.22604 0.95634 0.89349 0.95949 1.48345 1.50542 1.31046 1.04142 1.18053 0.79761 0.85474 0.82027 1.90816 1.42761 1.28146 1.80591 1.22870 1.07863 1.02516 0.92811 1.22101 0.91562 0.95553 0.92060 1.18786 1.07000 0.98214 0.92789 1.21226 0.93462 0.91773 0.99277 1.20400 1.08961 1.03432 0.89566 1.20159 0.91429 0.90148 0.90554 1.83885 1.64130 1.48315 1.16088 1.21849 1.38716 1.09483 0.79308 0.87803 1.26605 0.95651 0.94417 1.05032 1.70138 1.36683 1.12243 1.35966 0.84655 0.79434 0.78709 0.73512 1.18125 1.19525 1.18171 1.21194 1.07232 0.97380 1.00846 1.21292 0.95302 0.97741 0.91702 0.92952 0.90645 0.95083 0.93378 0.90286 0.91536 0.93856 0.77903 0.88567 0.88194 0.90492 0.87393 0.90109 0.90680 0.84141 0.86120 0.82717 0.85839 0.91575 0.85701 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.47 71.98 0.68 -1.78 16 2 C -0.12 -2.35 4.72 30.60 0.14 -2.21 16 3 C 0.16 2.66 0.50 3.96 0.00 2.66 16 4 C 0.07 1.12 5.96 71.98 0.43 1.55 16 5 O -0.56 -13.31 9.36 -125.75 -1.18 -14.48 16 6 C -0.12 -0.99 5.83 31.79 0.19 -0.81 16 7 C -0.12 -0.95 7.09 31.99 0.23 -0.72 16 8 C 0.09 1.15 6.63 86.85 0.58 1.72 16 9 N -0.61 -12.25 1.93 -770.35 -1.49 -13.74 16 10 C 0.56 15.49 7.04 86.33 0.61 16.10 16 11 O -0.54 -18.94 12.16 18.80 0.23 -18.71 16 12 C -0.24 -6.33 8.87 23.61 0.21 -6.12 16 13 C 0.01 0.21 9.45 23.82 0.23 0.43 16 14 C -0.17 -5.54 5.87 -20.12 -0.12 -5.66 16 15 C -0.04 -1.31 9.40 22.55 0.21 -1.09 16 16 C -0.20 -8.36 9.97 22.34 0.22 -8.14 16 17 C 0.13 6.28 6.66 22.72 0.15 6.43 16 18 O -0.22 -12.84 9.74 -20.32 -0.20 -13.03 16 19 C -0.42 -23.78 9.48 67.93 0.64 -23.13 16 20 H 0.10 5.41 5.18 -2.91 -0.02 5.39 16 21 C -0.02 -1.01 5.49 84.86 0.47 -0.55 16 22 N -0.91 -54.73 13.67 21.62 0.30 -54.43 16 23 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 C -0.25 -10.67 9.14 22.34 0.20 -10.47 16 28 C -0.04 -1.51 9.78 22.55 0.22 -1.29 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.93 6.21 -2.39 -0.01 0.92 16 31 H 0.03 0.68 7.50 -2.39 -0.02 0.67 16 32 H 0.05 1.34 6.30 -2.39 -0.02 1.33 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.37 6.09 9.12 -74.06 -0.68 5.41 16 37 H 0.10 0.64 6.03 -2.39 -0.01 0.63 16 38 H 0.10 0.50 7.83 -2.38 -0.02 0.48 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 1.02 6.94 -2.39 -0.02 1.01 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.14 3.04 4.75 -2.91 -0.01 3.02 16 44 H 0.12 3.69 7.52 -2.91 -0.02 3.67 16 45 H 0.16 3.84 6.16 -2.91 -0.02 3.82 16 46 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 47 H 0.28 15.10 8.31 -92.71 -0.77 14.32 16 48 H 0.13 5.42 5.62 -2.91 -0.02 5.40 16 49 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -76.98 389.67 5.29 -71.69 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.31 Total: 31.87 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 5.29 Total: -33.08 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.19 Total: -68.17 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.15 Total: -46.22 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -76.98 5.29 -71.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189169535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds