Wall clock time and date at job start Wed Apr 1 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47519 * 2 1 4 4 H 1.09005 * 109.46762 * 304.99814 * 3 2 1 5 5 C 1.53001 * 109.46951 * 184.99856 * 3 2 1 6 6 O 1.42901 * 109.47260 * 64.99863 * 3 2 1 7 7 C 1.35685 * 116.99883 * 204.81334 * 6 3 2 8 8 C 1.38608 * 120.16018 * 354.58000 * 7 6 3 9 9 C 1.38128 * 120.10992 * 180.02562 * 8 7 6 10 10 C 1.38573 * 120.43384 * 0.02562 * 9 8 7 11 11 C 1.37743 * 120.32061 * 359.73689 * 10 9 8 12 12 C 1.39933 * 119.88112 * 0.51581 * 11 10 9 13 13 C 1.46942 * 120.21237 * 179.76497 * 12 11 10 14 14 C 1.35002 * 120.00104 * 359.72011 * 13 12 11 15 15 C 1.46241 * 120.00088 * 179.97438 * 14 13 12 16 16 O 1.21725 * 120.00005 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00153 * 180.02562 * 15 14 13 18 18 C 1.47073 * 136.05919 * 180.02562 * 17 15 14 19 19 C 1.53501 * 88.04618 * 207.11906 * 18 17 15 20 20 O 1.42903 * 114.20474 * 87.55012 * 19 18 17 21 21 C 1.50703 * 114.20167 * 220.36918 * 19 18 17 22 22 H 1.07997 * 120.00049 * 0.02562 * 21 19 18 23 23 C 1.37884 * 119.99539 * 179.97438 * 21 19 18 24 24 N 1.31507 * 119.99632 * 180.02562 * 23 21 19 25 25 Si 1.86794 * 119.99898 * 0.02562 * 23 21 19 26 26 H 1.48506 * 109.47197 * 90.00048 * 25 23 21 27 27 H 1.48504 * 109.47242 * 209.99435 * 25 23 21 28 28 H 1.48498 * 109.47663 * 329.99862 * 25 23 21 29 29 C 1.47071 * 136.05616 * 0.04118 * 17 15 14 30 30 H 1.09000 * 109.47141 * 300.00765 * 1 2 3 31 31 H 1.08999 * 109.46817 * 60.00036 * 1 2 3 32 32 H 1.08999 * 109.47458 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47141 * 239.99235 * 2 1 3 34 34 H 1.09001 * 109.46432 * 119.99597 * 2 1 3 35 35 H 1.09000 * 109.47127 * 60.00155 * 5 3 2 36 36 H 1.08999 * 109.46917 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47197 * 299.99716 * 5 3 2 38 38 H 1.08002 * 119.94523 * 0.04863 * 8 7 6 39 39 H 1.08000 * 119.78000 * 180.02562 * 9 8 7 40 40 H 1.08007 * 119.83437 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.06131 * 180.28131 * 11 10 9 42 42 H 1.07994 * 120.00183 * 179.72189 * 13 12 11 43 43 H 1.08001 * 119.99928 * 0.02562 * 14 13 12 44 44 H 1.08995 * 113.46470 * 321.93183 * 18 17 15 45 45 H 1.08999 * 113.46743 * 92.31103 * 18 17 15 46 46 H 0.96695 * 113.99944 * 180.02562 * 20 19 18 47 47 H 0.97004 * 120.00034 * 180.02562 * 24 23 21 48 48 H 1.09000 * 113.47212 * 267.62846 * 29 17 15 49 49 H 1.08999 * 113.46559 * 38.01592 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4441 -0.1257 6 8 1.6621 2.0814 1.2210 7 6 1.5563 3.4340 1.2014 8 6 1.9179 4.1444 0.0674 9 6 1.8103 5.5214 0.0488 10 6 1.3419 6.2040 1.1600 11 6 0.9730 5.5155 2.2946 12 6 1.0816 4.1208 2.3299 13 6 0.6950 3.3795 3.5383 14 6 0.2386 4.0443 4.6210 15 6 -0.1467 3.3064 5.8234 16 8 -0.0554 2.0928 5.8482 17 7 -0.6027 3.9700 6.9042 18 6 -1.0718 3.6068 8.2499 19 6 -1.9228 4.8842 8.2410 20 8 -3.2191 4.7206 7.6623 21 6 -1.9422 5.6229 9.5544 22 1 -1.3857 5.2405 10.3973 23 6 -2.6696 6.7876 9.6796 24 7 -2.6861 7.4324 10.8256 25 14 -3.6315 7.4493 8.2215 26 1 -5.0044 6.8833 8.2361 27 1 -3.7057 8.9299 8.3081 28 1 -2.9493 7.0608 6.9609 29 6 -0.8507 5.3762 7.2566 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.8533 0.9568 -1.0571 36 1 3.9283 2.4718 -0.1261 37 1 3.9995 0.9051 0.7161 38 1 2.2840 3.6204 -0.8031 39 1 2.0932 6.0695 -0.8378 40 1 1.2613 7.2807 1.1347 41 1 0.6042 6.0514 3.1567 42 1 0.7759 2.3028 3.5603 43 1 0.1573 5.1210 4.5989 44 1 -1.6630 2.6914 8.2711 45 1 -0.2827 3.6162 9.0018 46 1 -3.7525 5.5271 7.6578 47 1 -3.1982 8.2516 10.9138 48 1 -0.0031 5.8575 7.7444 49 1 -1.2532 5.9657 6.4328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193973980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:44 Heat of formation + Delta-G solvation = -32.079262 kcal Electronic energy + Delta-G solvation = -29747.877958 eV Core-core repulsion = 25642.658844 eV Total energy + Delta-G solvation = -4105.219114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68684 -39.79515 -38.23891 -37.61857 -34.60372 -34.52651 -33.95261 -32.55719 -30.57468 -30.27171 -29.80436 -28.61172 -25.84830 -25.23866 -24.45158 -24.00250 -22.85303 -21.28838 -20.83191 -19.70228 -18.58949 -18.29734 -17.48042 -16.92672 -16.39128 -16.13830 -15.86954 -15.64165 -15.16549 -15.05380 -14.78051 -14.25223 -14.06598 -13.96704 -13.77165 -13.60705 -13.43753 -13.35975 -13.09349 -12.78438 -12.71113 -12.36126 -12.33507 -12.24827 -12.11659 -12.06972 -11.48624 -11.40299 -11.27453 -11.15691 -11.00607 -10.92757 -10.85071 -10.56142 -10.37043 -10.11378 -9.75890 -9.26064 -9.04854 -8.85181 -8.67579 -8.15349 -7.87625 -6.43380 -4.49192 0.51097 1.18022 2.03205 2.84743 2.98932 3.02149 3.14009 3.46079 3.51852 3.87132 4.01788 4.24232 4.43394 4.45229 4.55568 4.62278 4.64124 4.76283 4.86140 4.96670 5.03833 5.07190 5.12856 5.18527 5.22443 5.24969 5.31598 5.42094 5.49578 5.59672 5.62220 5.70791 5.76712 5.77225 5.87804 5.99407 6.02453 6.06711 6.13156 6.21259 6.25023 6.32844 6.40786 6.48231 6.59975 6.62188 6.68423 7.17131 7.18657 8.00228 8.36837 8.51181 8.60784 8.69433 9.14175 10.68728 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002411 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.958088 B =11611.349639 C =12598.041471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.182 4.182 6 O -0.298 6.298 7 C 0.154 3.846 8 C -0.216 4.216 9 C -0.073 4.073 10 C -0.159 4.159 11 C -0.066 4.066 12 C -0.099 4.099 13 C -0.025 4.025 14 C -0.195 4.195 15 C 0.569 3.431 16 O -0.563 6.563 17 N -0.632 5.632 18 C 0.121 3.879 19 C 0.195 3.805 20 O -0.549 6.549 21 C -0.532 4.532 22 H 0.093 0.907 23 C 0.080 3.920 24 N -0.875 5.875 25 Si 0.860 3.140 26 H -0.266 1.266 27 H -0.284 1.284 28 H -0.257 1.257 29 C 0.061 3.939 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.351 0.649 47 H 0.271 0.729 48 H 0.095 0.905 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.260 -4.930 -24.940 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C 0.023 3.977 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.212 6.212 7 C 0.108 3.892 8 C -0.234 4.234 9 C -0.092 4.092 10 C -0.177 4.177 11 C -0.084 4.084 12 C -0.099 4.099 13 C -0.045 4.045 14 C -0.216 4.216 15 C 0.361 3.639 16 O -0.445 6.445 17 N -0.364 5.364 18 C -0.001 4.001 19 C 0.154 3.846 20 O -0.361 6.361 21 C -0.570 4.570 22 H 0.111 0.889 23 C -0.126 4.126 24 N -0.511 5.511 25 Si 0.688 3.312 26 H -0.193 1.193 27 H -0.210 1.210 28 H -0.182 1.182 29 C -0.063 4.063 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.142 0.858 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.204 0.796 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.491 -6.251 -24.895 27.730 hybrid contribution -0.590 1.340 -0.877 1.707 sum 9.902 -4.911 -25.773 28.043 Atomic orbital electron populations 1.21776 0.94921 1.02125 1.02503 1.21640 0.97056 0.93635 1.03321 1.22572 0.95087 0.94200 0.85802 0.90825 1.22397 0.95151 1.03209 1.03151 1.86118 1.83039 1.16386 1.35623 1.19115 0.93950 0.82666 0.93502 1.21209 1.08451 0.95379 0.98383 1.21046 0.96527 0.93428 0.98150 1.20999 1.02883 1.00256 0.93603 1.21359 0.96315 0.92255 0.98432 1.18403 1.05512 0.92821 0.93189 1.22080 0.92214 1.00319 0.89869 1.22883 1.04546 1.00264 0.93914 1.17675 0.77021 0.86631 0.82580 1.90764 1.56358 1.13783 1.83590 1.49555 1.62564 1.11016 1.13278 1.23142 0.95734 0.99375 0.81818 1.20283 0.80166 0.93225 0.90963 1.86483 1.27715 1.37875 1.84003 1.21144 1.32233 1.07697 0.95926 0.88900 1.25009 0.95594 0.96250 0.95733 1.69849 1.40058 1.17302 1.23859 0.87314 0.81461 0.78973 0.83414 1.19260 1.21020 1.18248 1.24496 1.00517 0.82847 0.98395 0.91643 0.92934 0.92286 0.90068 0.90489 0.90963 0.91755 0.91149 0.85150 0.85759 0.85554 0.84721 0.84422 0.85832 0.90966 0.88748 0.79648 0.91854 0.88709 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.08 0.63 2.22 -26.73 -0.06 0.57 16 4 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 5 C -0.18 -1.21 9.17 37.16 0.34 -0.87 16 6 O -0.30 -3.42 8.52 -18.76 -0.16 -3.58 16 7 C 0.15 1.80 6.62 -38.64 -0.26 1.54 16 8 C -0.22 -2.01 8.23 -39.49 -0.32 -2.34 16 9 C -0.07 -0.63 10.03 -39.50 -0.40 -1.03 16 10 C -0.16 -1.51 10.02 -39.64 -0.40 -1.90 16 11 C -0.07 -0.75 9.41 -39.13 -0.37 -1.11 16 12 C -0.10 -1.28 5.88 -104.93 -0.62 -1.90 16 13 C -0.02 -0.38 9.21 -37.21 -0.34 -0.72 16 14 C -0.20 -3.24 9.25 -37.52 -0.35 -3.58 16 15 C 0.57 11.71 7.99 -13.05 -0.10 11.61 16 16 O -0.56 -13.13 17.01 5.17 0.09 -13.04 16 17 N -0.63 -13.17 3.69 -186.69 -0.69 -13.86 16 18 C 0.12 2.60 8.03 -8.49 -0.07 2.53 16 19 C 0.19 4.48 1.10 -91.18 -0.10 4.38 16 20 O -0.55 -13.15 13.32 -35.23 -0.47 -13.62 16 21 C -0.53 -13.68 9.27 -34.44 -0.32 -14.00 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 23 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 24 N -0.88 -24.31 13.96 55.43 0.77 -23.54 16 25 Si 0.86 18.85 24.42 -169.99 -4.15 14.70 16 26 H -0.27 -5.72 7.06 56.52 0.40 -5.32 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.26 -5.29 5.49 56.52 0.31 -4.98 16 29 C 0.06 1.23 7.17 -8.42 -0.06 1.17 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.44 6.90 -51.93 -0.36 0.09 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.13 0.93 5.42 -52.49 -0.28 0.65 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 41 H 0.14 1.41 6.17 -52.49 -0.32 1.09 16 42 H 0.14 2.27 7.10 -52.49 -0.37 1.90 16 43 H 0.12 1.78 5.98 -52.49 -0.31 1.47 16 44 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 45 H 0.09 1.87 8.10 -51.93 -0.42 1.45 16 46 H 0.35 7.97 3.16 45.56 0.14 8.12 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 49 H 0.06 1.22 7.15 -51.93 -0.37 0.85 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -31.45 396.78 -8.84 -40.29 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.91 Total: 12.25 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.30 Total: -5.58 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.08 Total: -37.40 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.54 Total: -30.24 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.15 Total: 14.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.45 -8.84 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.211 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds