Wall clock time and date at job start Wed Apr 1 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47519 * 2 1 4 4 H 1.09005 * 109.46762 * 304.99814 * 3 2 1 5 5 C 1.53001 * 109.46951 * 184.99856 * 3 2 1 6 6 O 1.42901 * 109.47260 * 64.99863 * 3 2 1 7 7 C 1.35685 * 116.99883 * 204.81334 * 6 3 2 8 8 C 1.38608 * 120.16018 * 354.58000 * 7 6 3 9 9 C 1.38128 * 120.10992 * 180.02562 * 8 7 6 10 10 C 1.38573 * 120.43384 * 0.02562 * 9 8 7 11 11 C 1.37743 * 120.32061 * 359.73689 * 10 9 8 12 12 C 1.39933 * 119.88112 * 0.51581 * 11 10 9 13 13 C 1.46942 * 120.21237 * 179.76497 * 12 11 10 14 14 C 1.35002 * 120.00104 * 359.72011 * 13 12 11 15 15 C 1.46241 * 120.00088 * 179.97438 * 14 13 12 16 16 O 1.21725 * 120.00005 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00153 * 180.02562 * 15 14 13 18 18 C 1.47073 * 136.05919 * 180.02562 * 17 15 14 19 19 C 1.53501 * 88.04618 * 207.11906 * 18 17 15 20 20 O 1.42903 * 114.20474 * 87.55012 * 19 18 17 21 21 C 1.50703 * 114.20167 * 220.36918 * 19 18 17 22 22 H 1.07997 * 120.00049 * 0.02562 * 21 19 18 23 23 C 1.37884 * 119.99539 * 179.97438 * 21 19 18 24 24 N 1.31507 * 119.99632 * 180.02562 * 23 21 19 25 25 Si 1.86794 * 119.99898 * 0.02562 * 23 21 19 26 26 H 1.48506 * 109.47197 * 90.00048 * 25 23 21 27 27 H 1.48504 * 109.47242 * 209.99435 * 25 23 21 28 28 H 1.48498 * 109.47663 * 329.99862 * 25 23 21 29 29 C 1.47071 * 136.05616 * 0.04118 * 17 15 14 30 30 H 1.09000 * 109.47141 * 300.00765 * 1 2 3 31 31 H 1.08999 * 109.46817 * 60.00036 * 1 2 3 32 32 H 1.08999 * 109.47458 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47141 * 239.99235 * 2 1 3 34 34 H 1.09001 * 109.46432 * 119.99597 * 2 1 3 35 35 H 1.09000 * 109.47127 * 60.00155 * 5 3 2 36 36 H 1.08999 * 109.46917 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47197 * 299.99716 * 5 3 2 38 38 H 1.08002 * 119.94523 * 0.04863 * 8 7 6 39 39 H 1.08000 * 119.78000 * 180.02562 * 9 8 7 40 40 H 1.08007 * 119.83437 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.06131 * 180.28131 * 11 10 9 42 42 H 1.07994 * 120.00183 * 179.72189 * 13 12 11 43 43 H 1.08001 * 119.99928 * 0.02562 * 14 13 12 44 44 H 1.08995 * 113.46470 * 321.93183 * 18 17 15 45 45 H 1.08999 * 113.46743 * 92.31103 * 18 17 15 46 46 H 0.96695 * 113.99944 * 180.02562 * 20 19 18 47 47 H 0.97004 * 120.00034 * 180.02562 * 24 23 21 48 48 H 1.09000 * 113.47212 * 267.62846 * 29 17 15 49 49 H 1.08999 * 113.46559 * 38.01592 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4441 -0.1257 6 8 1.6621 2.0814 1.2210 7 6 1.5563 3.4340 1.2014 8 6 1.9179 4.1444 0.0674 9 6 1.8103 5.5214 0.0488 10 6 1.3419 6.2040 1.1600 11 6 0.9730 5.5155 2.2946 12 6 1.0816 4.1208 2.3299 13 6 0.6950 3.3795 3.5383 14 6 0.2386 4.0443 4.6210 15 6 -0.1467 3.3064 5.8234 16 8 -0.0554 2.0928 5.8482 17 7 -0.6027 3.9700 6.9042 18 6 -1.0718 3.6068 8.2499 19 6 -1.9228 4.8842 8.2410 20 8 -3.2191 4.7206 7.6623 21 6 -1.9422 5.6229 9.5544 22 1 -1.3857 5.2405 10.3973 23 6 -2.6696 6.7876 9.6796 24 7 -2.6861 7.4324 10.8256 25 14 -3.6315 7.4493 8.2215 26 1 -5.0044 6.8833 8.2361 27 1 -3.7057 8.9299 8.3081 28 1 -2.9493 7.0608 6.9609 29 6 -0.8507 5.3762 7.2566 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.8533 0.9568 -1.0571 36 1 3.9283 2.4718 -0.1261 37 1 3.9995 0.9051 0.7161 38 1 2.2840 3.6204 -0.8031 39 1 2.0932 6.0695 -0.8378 40 1 1.2613 7.2807 1.1347 41 1 0.6042 6.0514 3.1567 42 1 0.7759 2.3028 3.5603 43 1 0.1573 5.1210 4.5989 44 1 -1.6630 2.6914 8.2711 45 1 -0.2827 3.6162 9.0018 46 1 -3.7525 5.5271 7.6578 47 1 -3.1982 8.2516 10.9138 48 1 -0.0031 5.8575 7.7444 49 1 -1.2532 5.9657 6.4328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193973980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:43 Heat of formation + Delta-G solvation = -52.260944 kcal Electronic energy + Delta-G solvation = -29748.753102 eV Core-core repulsion = 25642.658844 eV Total energy + Delta-G solvation = -4106.094257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57469 -41.36047 -39.47926 -38.81413 -36.37035 -35.30088 -34.96699 -34.55920 -31.51641 -30.99127 -30.90650 -29.95666 -27.58670 -26.96108 -25.13248 -24.96793 -23.71096 -22.44400 -21.76627 -21.10470 -19.85682 -19.45670 -19.20488 -18.30799 -18.16639 -17.26571 -16.81105 -16.52387 -16.42072 -16.25482 -15.82218 -15.61288 -15.36027 -14.95168 -14.88566 -14.79165 -14.64417 -14.44327 -14.39740 -14.09142 -14.00170 -13.82617 -13.42937 -13.25014 -12.93240 -12.88257 -12.70438 -12.65944 -12.42005 -12.30840 -12.05869 -11.99966 -11.91991 -11.62830 -11.53994 -11.48933 -11.39729 -11.09792 -10.91257 -10.49924 -9.79641 -9.59468 -8.92501 -8.43111 -6.55342 -0.49570 0.42787 0.95010 1.25799 1.28837 1.40715 1.88214 2.15877 2.17162 2.24095 2.74707 2.86003 3.18840 3.43792 3.65707 3.74682 3.78406 3.87646 3.94814 3.98829 4.07025 4.18056 4.27187 4.33295 4.38451 4.42100 4.44194 4.49547 4.58460 4.62820 4.64135 4.67012 4.75213 4.79552 4.90004 4.90419 4.92952 4.99917 5.02442 5.15174 5.20347 5.23237 5.27822 5.34588 5.43665 5.50105 5.56988 5.80725 6.02141 6.44028 6.52360 6.65408 6.76188 7.07459 7.13164 8.72138 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002411 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.958088 B =11611.349639 C =12598.041471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.089 0.911 5 C -0.178 4.178 6 O -0.323 6.323 7 C 0.147 3.853 8 C -0.217 4.217 9 C -0.059 4.059 10 C -0.163 4.163 11 C -0.069 4.069 12 C -0.136 4.136 13 C 0.004 3.996 14 C -0.222 4.222 15 C 0.564 3.436 16 O -0.603 6.603 17 N -0.634 5.634 18 C 0.117 3.883 19 C 0.184 3.816 20 O -0.559 6.559 21 C -0.539 4.539 22 H 0.060 0.940 23 C 0.029 3.971 24 N -0.921 5.921 25 Si 0.918 3.082 26 H -0.258 1.258 27 H -0.279 1.279 28 H -0.232 1.232 29 C 0.075 3.925 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.148 0.852 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.356 0.644 47 H 0.275 0.725 48 H 0.108 0.892 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.061 -3.403 -29.508 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.017 3.983 4 H 0.107 0.893 5 C -0.235 4.235 6 O -0.237 6.237 7 C 0.101 3.899 8 C -0.235 4.235 9 C -0.077 4.077 10 C -0.181 4.181 11 C -0.087 4.087 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.242 4.242 15 C 0.359 3.641 16 O -0.488 6.488 17 N -0.366 5.366 18 C -0.006 4.006 19 C 0.144 3.856 20 O -0.371 6.371 21 C -0.577 4.577 22 H 0.078 0.922 23 C -0.173 4.173 24 N -0.558 5.558 25 Si 0.743 3.257 26 H -0.184 1.184 27 H -0.205 1.205 28 H -0.156 1.156 29 C -0.048 4.048 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.166 0.834 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.209 0.791 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.304 -4.728 -29.473 31.918 hybrid contribution -0.753 0.757 0.453 1.160 sum 10.551 -3.970 -29.021 31.133 Atomic orbital electron populations 1.21768 0.95796 1.02249 1.01504 1.21691 0.96256 0.93574 1.04018 1.22855 0.96136 0.94288 0.85055 0.89325 1.22379 0.93893 1.03280 1.03918 1.86108 1.83164 1.16686 1.37745 1.19336 0.93703 0.82951 0.93926 1.21511 1.07879 0.95946 0.98197 1.21529 0.94072 0.93220 0.98903 1.21346 1.02150 1.01588 0.93021 1.21530 0.96089 0.91517 0.99525 1.18422 1.08622 0.93774 0.92898 1.22095 0.89517 0.99424 0.90601 1.22682 1.07821 1.01041 0.92635 1.18347 0.76096 0.86411 0.83286 1.90731 1.58201 1.15570 1.84281 1.49558 1.62819 1.11253 1.13004 1.23151 0.95921 0.98431 0.83050 1.20292 0.80586 0.94047 0.90715 1.86480 1.28234 1.38513 1.83854 1.21211 1.31996 1.08103 0.96421 0.92202 1.25808 0.96495 0.96355 0.98613 1.69982 1.41441 1.18082 1.26297 0.86330 0.80285 0.78393 0.80690 1.18418 1.20492 1.15599 1.24326 0.99662 0.82709 0.98057 0.94653 0.91817 0.91668 0.87202 0.91884 0.88429 0.91821 0.92455 0.82786 0.82278 0.83042 0.84244 0.86681 0.83434 0.91959 0.87748 0.79114 0.91592 0.87411 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.81 71.98 0.71 -1.74 16 2 C -0.12 -1.56 5.64 30.59 0.17 -1.39 16 3 C 0.07 1.02 2.22 30.59 0.07 1.09 16 4 H 0.09 0.98 6.32 -2.38 -0.02 0.96 16 5 C -0.18 -1.96 9.17 71.98 0.66 -1.30 16 6 O -0.32 -7.31 8.52 -90.03 -0.77 -8.07 16 7 C 0.15 3.24 6.62 22.88 0.15 3.39 16 8 C -0.22 -3.32 8.23 22.33 0.18 -3.14 16 9 C -0.06 -0.76 10.03 22.32 0.22 -0.54 16 10 C -0.16 -2.46 10.02 22.23 0.22 -2.24 16 11 C -0.07 -1.41 9.41 22.56 0.21 -1.19 16 12 C -0.14 -3.43 5.88 -20.06 -0.12 -3.55 16 13 C 0.00 0.12 9.21 23.81 0.22 0.34 16 14 C -0.22 -7.31 9.25 23.61 0.22 -7.10 16 15 C 0.56 23.62 7.99 86.32 0.69 24.31 16 16 O -0.60 -29.24 17.01 -4.43 -0.08 -29.31 16 17 N -0.63 -26.46 3.69 -863.18 -3.19 -29.65 16 18 C 0.12 5.12 8.03 83.19 0.67 5.79 16 19 C 0.18 8.47 1.10 -11.16 -0.01 8.45 16 20 O -0.56 -26.24 13.32 -148.98 -1.99 -28.22 16 21 C -0.54 -28.30 9.27 25.60 0.24 -28.06 16 22 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 23 C 0.03 1.51 5.47 84.66 0.46 1.97 16 24 N -0.92 -52.20 13.96 21.45 0.30 -51.90 16 25 Si 0.92 37.94 24.42 68.60 1.68 39.61 16 26 H -0.26 -10.33 7.06 99.48 0.70 -9.63 16 27 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.23 -8.59 5.49 99.48 0.55 -8.04 16 29 C 0.08 2.94 7.17 83.23 0.60 3.54 16 30 H 0.03 0.75 7.82 -2.39 -0.02 0.74 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.71 6.90 -2.39 -0.02 0.70 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.15 1.56 5.42 -2.91 -0.02 1.54 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.14 2.60 6.17 -2.91 -0.02 2.59 16 42 H 0.12 4.05 7.10 -2.91 -0.02 4.02 16 43 H 0.15 4.05 5.98 -2.91 -0.02 4.03 16 44 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.10 4.27 8.10 -2.39 -0.02 4.25 16 46 H 0.36 15.48 3.16 -74.06 -0.23 15.25 16 47 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.11 3.93 8.10 -2.39 -0.02 3.91 16 49 H 0.08 2.95 7.15 -2.39 -0.02 2.93 16 Total: -1.00 -71.23 396.78 2.09 -69.14 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.57 Total: 39.77 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.56 Total: -1.36 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.89 Total: -81.55 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -2.83 Total: -65.61 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.68 Total: 39.61 kcal Total: -71.23 2.09 -69.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.879 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds