Wall clock time and date at job start Wed Apr 1 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99862 * 2 1 4 4 C 1.50695 * 120.00041 * 180.02562 * 2 1 3 5 5 H 1.08993 * 110.33329 * 4.20446 * 4 2 1 6 6 O 1.44432 * 110.37372 * 126.45348 * 4 2 1 7 7 C 1.44424 * 105.27636 * 159.45043 * 6 4 2 8 8 C 1.54478 * 104.90322 * 319.43439 * 7 6 4 9 9 C 1.54483 * 110.46455 * 241.88419 * 4 2 1 10 10 H 1.09000 * 110.50996 * 335.79130 * 9 4 2 11 11 C 1.53001 * 110.50550 * 98.36490 * 9 4 2 12 12 N 1.46506 * 109.46930 * 185.00396 * 11 9 4 13 13 C 1.34772 * 119.99833 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99611 * 179.97438 * 13 12 11 16 16 C 1.50711 * 109.46921 * 179.97438 * 15 13 12 17 17 C 1.38298 * 119.92818 * 269.72471 * 16 15 13 18 18 C 1.38099 * 120.06452 * 179.72659 * 17 16 15 19 19 C 1.38878 * 119.92952 * 0.57063 * 18 17 16 20 20 O 1.35756 * 120.06965 * 179.68444 * 19 18 17 21 21 C 1.34827 * 117.00298 * 174.48462 * 20 19 18 22 22 H 1.07998 * 119.99860 * 5.05854 * 21 20 19 23 23 C 1.38658 * 120.00247 * 185.05589 * 21 20 19 24 24 N 1.31554 * 119.99794 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99916 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47082 * 60.00424 * 25 23 21 27 27 H 1.48504 * 109.46834 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47459 * 300.00499 * 25 23 21 29 29 C 1.38879 * 119.86626 * 359.70090 * 19 18 17 30 30 C 1.38104 * 119.92693 * 0.02562 * 29 19 18 31 31 H 1.08002 * 120.00376 * 359.97438 * 1 2 3 32 32 H 1.08002 * 119.99992 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47020 * 270.00619 * 3 2 1 34 34 H 1.09002 * 109.46728 * 30.00069 * 3 2 1 35 35 H 1.08997 * 109.47070 * 149.99833 * 3 2 1 36 36 H 1.08997 * 110.37051 * 78.31945 * 7 6 4 37 37 H 1.09001 * 110.36886 * 200.54514 * 7 6 4 38 38 H 1.08996 * 110.51396 * 142.67844 * 8 7 6 39 39 H 1.09004 * 110.50917 * 265.39148 * 8 7 6 40 40 H 1.09004 * 109.47288 * 304.99452 * 11 9 4 41 41 H 1.08997 * 109.47383 * 65.00190 * 11 9 4 42 42 H 0.97001 * 119.99737 * 359.97438 * 12 11 9 43 43 H 1.09000 * 109.47311 * 299.99058 * 15 13 12 44 44 H 1.08997 * 109.47715 * 59.99580 * 15 13 12 45 45 H 1.08001 * 119.96604 * 359.97438 * 17 16 15 46 46 H 1.08001 * 120.03655 * 180.27247 * 18 17 16 47 47 H 0.97001 * 119.99987 * 179.97438 * 24 23 21 48 48 H 1.07996 * 120.03837 * 180.02562 * 29 19 18 49 49 H 1.07997 * 119.96499 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3701 -2.1426 -0.0759 6 8 3.0116 -1.3378 -1.0896 7 6 3.9798 -2.3440 -0.7211 8 6 4.2166 -2.1327 0.7907 9 6 2.9242 -1.4323 1.2759 10 1 3.1534 -0.4470 1.6818 11 6 2.2078 -2.2884 2.3223 12 7 2.9864 -2.2959 3.5633 13 6 2.5458 -2.9903 4.6310 14 8 1.5045 -3.6086 4.5647 15 6 3.3471 -2.9985 5.9073 16 6 2.6414 -3.8416 6.9381 17 6 1.7249 -3.2600 7.7951 18 6 1.0724 -4.0310 8.7369 19 6 1.3462 -5.3893 8.8307 20 8 0.7112 -6.1486 9.7598 21 6 0.9367 -7.4773 9.7225 22 1 1.6595 -7.8831 9.0302 23 6 0.2408 -8.3228 10.5731 24 7 -0.6399 -7.8286 11.4161 25 14 0.5529 -10.1638 10.5208 26 1 1.9791 -10.4332 10.8351 27 1 -0.3113 -10.8409 11.5209 28 1 0.2387 -10.6809 9.1648 29 6 2.2712 -5.9692 7.9724 30 6 2.9162 -5.1940 7.0289 31 1 -0.5401 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 2.2450 1.6199 -1.0277 34 1 1.4743 2.0648 0.5139 35 1 3.0158 1.1749 0.5138 36 1 3.5803 -3.3410 -0.9069 37 1 4.9075 -2.1986 -1.2746 38 1 4.3462 -3.0905 1.2945 39 1 5.0836 -1.4929 0.9557 40 1 1.2189 -1.8729 2.5165 41 1 2.1069 -3.3080 1.9504 42 1 3.8194 -1.8017 3.6161 43 1 4.3359 -3.4139 5.7129 44 1 3.4481 -1.9790 6.2795 45 1 1.5164 -2.2027 7.7251 46 1 0.3536 -3.5772 9.4031 47 1 -1.1270 -8.4201 12.0109 48 1 2.4859 -7.0253 8.0426 49 1 3.6359 -5.6442 6.3613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281255143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:55 Heat of formation + Delta-G solvation = -96.758348 kcal Electronic energy + Delta-G solvation = -28952.121769 eV Core-core repulsion = 24844.097960 eV Total energy + Delta-G solvation = -4108.023809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27126 -40.82071 -40.17859 -38.21675 -36.24806 -36.02138 -34.39589 -33.33126 -32.47599 -31.76533 -30.06893 -28.41010 -28.22293 -27.22498 -25.92976 -23.87481 -23.62793 -22.59234 -21.61375 -21.22594 -19.83876 -19.76837 -18.85535 -18.06968 -17.38615 -17.07830 -16.64870 -16.55355 -16.34818 -16.30023 -15.99621 -15.76165 -15.50446 -15.14118 -14.89886 -14.71233 -14.47921 -14.38691 -14.35058 -14.11661 -14.01652 -13.79817 -13.57973 -12.95696 -12.84709 -12.75206 -12.58677 -12.47794 -12.44585 -12.29305 -12.22903 -12.14036 -12.01633 -11.90180 -11.58462 -11.17580 -10.93634 -10.81468 -10.72968 -10.07408 -10.05716 -9.75391 -8.89090 -8.47058 -6.15280 0.62387 0.68397 1.14559 1.33424 1.44747 1.50265 1.75601 2.17584 2.23708 2.85495 3.00897 3.17997 3.49131 3.53424 3.67422 3.73329 3.88679 3.99822 4.05888 4.07431 4.18747 4.19374 4.25349 4.31462 4.34417 4.51037 4.58069 4.61067 4.69676 4.73846 4.75135 4.81728 4.83633 4.86352 4.92146 4.96115 5.08124 5.09806 5.11469 5.14923 5.19753 5.31714 5.48220 5.57577 5.61137 5.72459 5.75906 5.79070 5.91234 6.03051 6.24471 6.64977 6.97247 7.38549 7.78942 8.76182 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.001750 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.200045 B =15998.844759 C =16251.728209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C -0.111 4.111 4 C 0.115 3.885 5 H 0.067 0.933 6 O -0.383 6.383 7 C 0.036 3.964 8 C -0.147 4.147 9 C -0.114 4.114 10 H 0.107 0.893 11 C 0.133 3.867 12 N -0.715 5.715 13 C 0.510 3.490 14 O -0.582 6.582 15 C -0.077 4.077 16 C -0.145 4.145 17 C -0.058 4.058 18 C -0.207 4.207 19 C 0.111 3.889 20 O -0.234 6.234 21 C -0.415 4.415 22 H 0.100 0.900 23 C -0.025 4.025 24 N -0.921 5.921 25 Si 1.020 2.980 26 H -0.254 1.254 27 H -0.270 1.270 28 H -0.260 1.260 29 C -0.245 4.245 30 C -0.061 4.061 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.419 0.581 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.111 0.889 47 H 0.273 0.727 48 H 0.117 0.883 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 17.468 -25.148 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.135 4.135 3 C -0.168 4.168 4 C 0.057 3.943 5 H 0.085 0.915 6 O -0.302 6.302 7 C -0.041 4.041 8 C -0.184 4.184 9 C -0.133 4.133 10 H 0.125 0.875 11 C 0.009 3.991 12 N -0.369 5.369 13 C 0.298 3.702 14 O -0.461 6.461 15 C -0.116 4.116 16 C -0.146 4.146 17 C -0.076 4.076 18 C -0.227 4.227 19 C 0.061 3.939 20 O -0.141 6.141 21 C -0.491 4.491 22 H 0.117 0.883 23 C -0.222 4.222 24 N -0.560 5.560 25 Si 0.839 3.161 26 H -0.179 1.179 27 H -0.195 1.195 28 H -0.185 1.185 29 C -0.264 4.264 30 C -0.079 4.079 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.256 0.744 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.129 0.871 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.239 17.161 -25.068 33.139 hybrid contribution -0.326 -1.090 0.511 1.248 sum 12.913 16.071 -24.556 32.063 Atomic orbital electron populations 1.23944 0.95145 1.02971 0.99901 1.21668 0.95238 0.95321 1.01267 1.20770 1.00266 0.93291 1.02425 1.21934 0.91047 0.95511 0.85846 0.91483 1.89174 1.39703 1.59320 1.42013 1.23597 0.93201 0.91718 0.95540 1.23119 0.97551 1.02190 0.95549 1.22758 0.95377 1.00718 0.94463 0.87501 1.21189 0.94733 0.99382 0.83817 1.45797 1.27168 1.52259 1.11694 1.21208 0.85546 0.77686 0.85796 1.90766 1.26344 1.44718 1.84297 1.20539 0.99162 1.02851 0.89074 1.19282 1.01719 0.93942 0.99684 1.20888 0.94042 0.99702 0.93001 1.20448 1.06136 0.91344 1.04737 1.19949 0.92297 0.92403 0.89299 1.83936 1.62784 1.19955 1.47423 1.21778 1.24672 0.79460 1.23155 0.88276 1.26626 0.94944 1.05852 0.94813 1.70184 1.25400 1.38082 1.22302 0.84640 0.79236 0.73312 0.78953 1.17863 1.19461 1.18467 1.21237 1.02720 1.00975 1.01474 1.20947 0.97846 0.93463 0.95606 0.86603 0.88473 0.91480 0.91027 0.91158 0.92294 0.87401 0.89612 0.88275 0.92868 0.92700 0.74383 0.85135 0.85030 0.83551 0.87087 0.91845 0.86515 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 13.91 67.78 0.94 -1.54 16 2 C -0.13 -1.87 5.17 -16.48 -0.09 -1.95 16 3 C -0.11 -1.19 9.75 71.24 0.69 -0.50 16 4 C 0.11 1.63 3.04 30.35 0.09 1.73 16 5 H 0.07 1.06 7.57 -2.39 -0.02 1.04 16 6 O -0.38 -6.15 11.20 -148.98 -1.67 -7.82 16 7 C 0.04 0.37 7.62 72.48 0.55 0.92 16 8 C -0.15 -1.11 6.62 31.71 0.21 -0.90 16 9 C -0.11 -1.19 2.56 -9.67 -0.02 -1.22 16 10 H 0.11 0.89 6.58 -2.39 -0.02 0.87 16 11 C 0.13 2.08 4.77 86.38 0.41 2.49 16 12 N -0.72 -10.01 5.45 -463.05 -2.52 -12.53 16 13 C 0.51 11.68 7.82 87.66 0.69 12.37 16 14 O -0.58 -20.80 16.03 -3.04 -0.05 -20.85 16 15 C -0.08 -1.43 5.83 29.11 0.17 -1.26 16 16 C -0.15 -4.57 4.38 -19.83 -0.09 -4.66 16 17 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 18 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 19 C 0.11 5.84 6.65 22.58 0.15 5.99 16 20 O -0.23 -14.77 9.76 -22.78 -0.22 -14.99 16 21 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 22 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 23 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 24 N -0.92 -58.24 13.67 21.61 0.30 -57.94 16 25 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 26 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 29 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 30 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 31 H 0.12 1.27 8.04 -2.91 -0.02 1.25 16 32 H 0.10 1.35 7.86 -2.91 -0.02 1.32 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.64 8.06 -2.39 -0.02 0.62 16 35 H 0.07 0.64 6.82 -2.39 -0.02 0.63 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.66 7.74 -2.39 -0.02 0.64 16 39 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.42 2.57 8.44 -92.71 -0.78 1.78 16 43 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 44 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 45 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 46 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 49 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -85.18 408.07 3.72 -81.46 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.18 Total: 24.56 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 5.68 Total: -38.16 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -2.23 Total: -70.48 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.94 Total: -43.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -85.18 3.72 -81.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281255143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.300 kcal (2) G-P(sol) polarization free energy of solvation -85.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds