Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99976 * 2 1 4 4 C 1.50702 * 120.00095 * 179.97438 * 2 1 3 5 5 H 1.09001 * 110.42174 * 231.14329 * 4 2 1 6 6 O 1.44420 * 110.37336 * 353.45263 * 4 2 1 7 7 C 1.44417 * 105.27693 * 159.34266 * 6 4 2 8 8 C 1.54485 * 104.80213 * 319.48706 * 7 6 4 9 9 C 1.54475 * 110.37039 * 108.83428 * 4 2 1 10 10 H 1.09005 * 110.63069 * 98.48896 * 9 4 2 11 11 C 1.52999 * 110.51348 * 335.83602 * 9 4 2 12 12 N 1.46498 * 109.47514 * 183.01482 * 11 9 4 13 13 C 1.34773 * 120.00007 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00393 * 359.72571 * 13 12 11 15 15 C 1.50709 * 119.99862 * 179.97438 * 13 12 11 16 16 C 1.50694 * 109.47060 * 179.72607 * 15 13 12 17 17 C 1.38302 * 119.93291 * 269.72885 * 16 15 13 18 18 C 1.38100 * 120.07238 * 179.72965 * 17 16 15 19 19 C 1.38880 * 119.92487 * 0.54098 * 18 17 16 20 20 O 1.35752 * 120.06355 * 179.74971 * 19 18 17 21 21 C 1.34831 * 117.00078 * 174.13521 * 20 19 18 22 22 H 1.08008 * 119.99616 * 5.09251 * 21 20 19 23 23 C 1.38646 * 120.00695 * 185.09226 * 21 20 19 24 24 N 1.31558 * 120.00396 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99543 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47264 * 90.00179 * 25 23 21 27 27 H 1.48506 * 109.47219 * 210.00092 * 25 23 21 28 28 H 1.48496 * 109.47210 * 329.99961 * 25 23 21 29 29 C 1.38870 * 119.86770 * 359.72971 * 19 18 17 30 30 C 1.38107 * 119.92854 * 0.02562 * 29 19 18 31 31 H 1.07997 * 120.00209 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99918 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46703 * 275.25763 * 3 2 1 34 34 H 1.08997 * 109.47557 * 35.25533 * 3 2 1 35 35 H 1.08993 * 109.47702 * 155.26107 * 3 2 1 36 36 H 1.09003 * 110.37473 * 200.66067 * 7 6 4 37 37 H 1.08997 * 110.37833 * 78.31983 * 7 6 4 38 38 H 1.09001 * 110.51361 * 265.33510 * 8 7 6 39 39 H 1.09001 * 110.62327 * 142.68367 * 8 7 6 40 40 H 1.08998 * 109.47441 * 63.00818 * 11 9 4 41 41 H 1.09004 * 109.46798 * 303.01361 * 11 9 4 42 42 H 0.97000 * 119.99435 * 359.97438 * 12 11 9 43 43 H 1.08998 * 109.46994 * 299.72487 * 15 13 12 44 44 H 1.09001 * 109.46909 * 59.72554 * 15 13 12 45 45 H 1.08003 * 119.96204 * 359.97438 * 17 16 15 46 46 H 1.07996 * 120.03800 * 180.27177 * 18 17 16 47 47 H 0.97000 * 119.99474 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.03717 * 180.02562 * 29 19 18 49 49 H 1.08004 * 119.96484 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.8087 -1.3137 0.7961 6 8 1.1501 -2.4130 0.1555 7 6 1.8624 -3.5660 -0.3434 8 6 2.6019 -3.0592 -1.6015 9 6 2.7373 -1.5376 -1.3699 10 1 3.7877 -1.2485 -1.3355 11 6 2.0047 -0.7613 -2.4661 12 7 2.6169 -1.0542 -3.7644 13 6 2.1330 -0.4786 -4.8828 14 8 1.1875 0.2779 -4.8152 15 6 2.7632 -0.7795 -6.2183 16 6 2.0369 -0.0206 -7.2988 17 6 0.9585 -0.5994 -7.9429 18 6 0.2873 0.0956 -8.9297 19 6 0.7034 1.3727 -9.2828 20 8 0.0488 2.0564 -10.2559 21 6 0.4255 3.3339 -10.4656 22 1 1.2691 3.7431 -9.9295 23 6 -0.2701 4.1224 -11.3693 24 7 0.0971 5.3691 -11.5735 25 14 -1.7288 3.4145 -12.2970 26 1 -2.9713 3.6471 -11.5176 27 1 -1.8433 4.0784 -13.6205 28 1 -1.5317 1.9555 -12.4905 29 6 1.7900 1.9490 -8.6381 30 6 2.4539 1.2508 -7.6486 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.1636 1.6668 -1.0234 34 1 1.5185 2.0394 0.5932 35 1 3.0534 1.1532 0.4300 36 1 1.1629 -4.3589 -0.6081 37 1 2.5767 -3.9214 0.3993 38 1 2.0131 -3.2584 -2.4969 39 1 3.5854 -3.5224 -1.6814 40 1 2.0755 0.3074 -2.2637 41 1 0.9563 -1.0591 -2.4833 42 1 3.3706 -1.6623 -3.8189 43 1 3.8101 -0.4765 -6.2025 44 1 2.6974 -1.8489 -6.4184 45 1 0.6385 -1.5945 -7.6711 46 1 -0.5574 -0.3552 -9.4292 47 1 -0.3894 5.9205 -12.2061 48 1 2.1156 2.9421 -8.9102 49 1 3.2988 1.6986 -7.1466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281255145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -90.166531 kcal Electronic energy + Delta-G solvation = -29400.212505 eV Core-core repulsion = 25292.474538 eV Total energy + Delta-G solvation = -4107.737967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37209 -40.93246 -40.21066 -38.31881 -36.35502 -35.84219 -34.52343 -33.35093 -32.56774 -31.80329 -29.92948 -28.62966 -28.13902 -27.18943 -26.02803 -23.80007 -23.71039 -22.52898 -21.59184 -21.23011 -19.82613 -19.46976 -19.10041 -17.90309 -17.78547 -17.10132 -16.79096 -16.68780 -16.31845 -16.21829 -15.97582 -15.69850 -15.57672 -15.22131 -14.96526 -14.79359 -14.64290 -14.34101 -14.24857 -14.09680 -14.06235 -13.73119 -13.71321 -13.05006 -12.95565 -12.79839 -12.60222 -12.51476 -12.41740 -12.31921 -12.20951 -12.04668 -12.01037 -11.92773 -11.50311 -11.28295 -10.99194 -10.87722 -10.72311 -10.05995 -9.90909 -9.78691 -8.97913 -8.50976 -6.23394 0.58610 0.62109 1.25405 1.29281 1.34244 1.50514 1.76210 2.24517 2.27232 2.78249 2.91133 3.05561 3.19018 3.47418 3.60821 3.84841 3.86991 4.04095 4.06086 4.15296 4.21171 4.24000 4.28956 4.34285 4.41351 4.48934 4.57122 4.58135 4.66189 4.70872 4.71219 4.82505 4.84487 4.87379 4.93176 4.98453 5.03955 5.05916 5.18237 5.19622 5.25738 5.37558 5.51303 5.56742 5.61575 5.74135 5.74859 5.79683 5.91203 6.07446 6.25134 6.66642 6.83313 7.40259 7.58250 8.60844 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.001950 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.895710 B =14356.242021 C =14881.182277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.116 4.116 4 C 0.117 3.883 5 H 0.100 0.900 6 O -0.395 6.395 7 C 0.038 3.962 8 C -0.149 4.149 9 C -0.115 4.115 10 H 0.119 0.881 11 C 0.132 3.868 12 N -0.716 5.716 13 C 0.508 3.492 14 O -0.583 6.583 15 C -0.078 4.078 16 C -0.137 4.137 17 C -0.060 4.060 18 C -0.194 4.194 19 C 0.117 3.883 20 O -0.247 6.247 21 C -0.400 4.400 22 H 0.079 0.921 23 C 0.008 3.992 24 N -0.924 5.924 25 Si 0.972 3.028 26 H -0.268 1.268 27 H -0.264 1.264 28 H -0.262 1.262 29 C -0.239 4.239 30 C -0.065 4.065 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.418 0.582 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.152 0.848 46 H 0.127 0.873 47 H 0.285 0.715 48 H 0.106 0.894 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.391 -21.595 25.429 35.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.138 4.138 3 C -0.172 4.172 4 C 0.059 3.941 5 H 0.117 0.883 6 O -0.315 6.315 7 C -0.038 4.038 8 C -0.186 4.186 9 C -0.134 4.134 10 H 0.138 0.862 11 C 0.008 3.992 12 N -0.370 5.370 13 C 0.295 3.705 14 O -0.462 6.462 15 C -0.118 4.118 16 C -0.138 4.138 17 C -0.078 4.078 18 C -0.214 4.214 19 C 0.068 3.932 20 O -0.154 6.154 21 C -0.476 4.476 22 H 0.097 0.903 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.794 3.206 26 H -0.193 1.193 27 H -0.188 1.188 28 H -0.187 1.187 29 C -0.258 4.258 30 C -0.083 4.083 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.256 0.744 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.170 0.830 46 H 0.145 0.855 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.300 -20.930 25.321 34.428 hybrid contribution -0.423 0.594 -0.665 0.987 sum 9.877 -20.335 24.656 33.451 Atomic orbital electron populations 1.23740 0.96167 1.01839 1.00721 1.21730 0.95585 0.95263 1.01200 1.20874 1.00881 0.93247 1.02240 1.21913 0.90569 0.85083 0.96495 0.88282 1.89134 1.39546 1.18001 1.84770 1.23596 0.96392 0.88808 0.95036 1.23097 1.03157 0.93435 0.98954 1.22718 1.01492 0.96045 0.93129 0.86244 1.21348 0.96264 0.99587 0.81999 1.45852 1.36528 1.48821 1.05807 1.21217 0.83004 0.79335 0.86909 1.90767 1.30044 1.37804 1.87578 1.20562 1.00812 1.03108 0.87283 1.19329 0.99218 0.95255 1.00001 1.20948 0.93665 0.99843 0.93370 1.20508 1.04187 0.93245 1.03412 1.19679 0.92085 0.92878 0.88549 1.83508 1.57568 1.25250 1.49117 1.20710 1.15940 0.84966 1.25971 0.90333 1.25302 1.01247 0.94779 0.97685 1.69733 1.42599 1.07434 1.36688 0.85202 0.78153 0.79203 0.78035 1.19344 1.18845 1.18662 1.21255 0.99906 1.01831 1.02788 1.20922 0.98729 0.94036 0.94597 0.88484 0.88606 0.91893 0.91240 0.89842 0.88795 0.90349 0.90859 0.87033 0.92207 0.94185 0.74445 0.85330 0.84697 0.83003 0.85501 0.90565 0.87600 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 13.58 67.78 0.92 -2.80 16 2 C -0.14 -2.24 3.65 -16.49 -0.06 -2.30 16 3 C -0.12 -1.55 9.64 71.24 0.69 -0.86 16 4 C 0.12 1.49 3.52 30.35 0.11 1.60 16 5 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 6 O -0.39 -6.50 9.82 -148.98 -1.46 -7.96 16 7 C 0.04 0.35 7.63 72.49 0.55 0.90 16 8 C -0.15 -0.95 6.26 31.61 0.20 -0.75 16 9 C -0.11 -1.06 3.12 -9.78 -0.03 -1.09 16 10 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 11 C 0.13 2.23 3.93 86.38 0.34 2.57 16 12 N -0.72 -10.40 5.19 -463.06 -2.40 -12.80 16 13 C 0.51 11.84 7.82 87.66 0.69 12.53 16 14 O -0.58 -21.20 16.03 -3.02 -0.05 -21.25 16 15 C -0.08 -1.44 5.83 29.10 0.17 -1.27 16 16 C -0.14 -4.21 4.38 -19.84 -0.09 -4.30 16 17 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 18 C -0.19 -7.99 9.99 22.39 0.22 -7.76 16 19 C 0.12 5.84 6.65 22.58 0.15 5.99 16 20 O -0.25 -14.15 8.59 -22.78 -0.20 -14.34 16 21 C -0.40 -24.66 9.95 67.92 0.68 -23.98 16 22 H 0.08 5.09 5.44 -2.91 -0.02 5.07 16 23 C 0.01 0.48 5.49 84.83 0.47 0.94 16 24 N -0.92 -56.91 13.96 21.61 0.30 -56.61 16 25 Si 0.97 47.23 28.62 68.60 1.96 49.19 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 28 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 29 C -0.24 -11.22 9.17 22.39 0.21 -11.01 16 30 C -0.06 -2.38 9.69 22.25 0.22 -2.16 16 31 H 0.10 1.86 8.05 -2.91 -0.02 1.84 16 32 H 0.10 2.09 6.91 -2.91 -0.02 2.07 16 33 H 0.06 0.99 6.58 -2.39 -0.02 0.97 16 34 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.64 7.55 -2.39 -0.02 0.62 16 39 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.06 1.22 5.36 -2.39 -0.01 1.21 16 41 H 0.04 0.94 8.00 -2.38 -0.02 0.92 16 42 H 0.42 2.52 8.18 -92.71 -0.76 1.76 16 43 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 44 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 45 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 47 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 48 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 49 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -83.39 400.78 4.00 -79.40 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.21 Total: 19.89 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 5.63 Total: -35.51 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.10 Total: -69.41 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.71 Total: -43.56 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.96 Total: 49.19 kcal Total: -83.39 4.00 -79.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281255145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.769 kcal (2) G-P(sol) polarization free energy of solvation -83.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds