Wall clock time and date at job start Wed Apr 1 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00471 * 2 1 4 4 C 1.50708 * 119.99680 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.89536 * 5.52059 * 4 2 1 6 6 O 1.43238 * 109.82844 * 126.45662 * 4 2 1 7 7 C 1.43644 * 109.97251 * 117.80305 * 6 4 2 8 8 C 1.54942 * 105.13603 * 24.42282 * 7 6 4 9 9 C 1.54384 * 109.83059 * 244.58549 * 4 2 1 10 10 H 1.09002 * 110.84580 * 337.32648 * 9 4 2 11 11 C 1.53006 * 110.84590 * 100.93742 * 9 4 2 12 12 N 1.46498 * 109.46814 * 185.00220 * 11 9 4 13 13 C 1.34776 * 119.99741 * 180.02562 * 12 11 9 14 14 O 1.21276 * 120.00354 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99680 * 180.02562 * 13 12 11 16 16 C 1.50705 * 109.46753 * 179.97438 * 15 13 12 17 17 C 1.38320 * 119.96631 * 89.99838 * 16 15 13 18 18 C 1.38282 * 120.13835 * 179.97438 * 17 16 15 19 19 C 1.38121 * 120.06941 * 359.97438 * 18 17 16 20 20 C 1.38859 * 119.92819 * 0.02562 * 19 18 17 21 21 O 1.35754 * 120.06493 * 180.02562 * 20 19 18 22 22 C 1.34828 * 117.00472 * 354.46051 * 21 20 19 23 23 H 1.08009 * 119.99579 * 5.05758 * 22 21 20 24 24 C 1.38648 * 120.00245 * 185.05580 * 22 21 20 25 25 N 1.31556 * 120.00117 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00034 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47191 * 89.99892 * 26 24 22 28 28 H 1.48492 * 109.47285 * 210.00512 * 26 24 22 29 29 H 1.48500 * 109.46944 * 330.00320 * 26 24 22 30 30 C 1.38082 * 119.96242 * 269.72557 * 16 15 13 31 31 H 1.08001 * 119.99878 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00635 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46974 * 239.99967 * 3 2 1 34 34 H 1.08996 * 109.47066 * 359.97438 * 3 2 1 35 35 H 1.08991 * 109.47371 * 120.00220 * 3 2 1 36 36 H 1.09005 * 110.31007 * 143.34158 * 7 6 4 37 37 H 1.09004 * 110.30820 * 265.40732 * 7 6 4 38 38 H 1.09002 * 111.12484 * 81.47429 * 8 7 6 39 39 H 1.08995 * 111.12596 * 205.59277 * 8 7 6 40 40 H 1.08998 * 109.47213 * 305.00317 * 11 9 4 41 41 H 1.08999 * 109.46722 * 65.00212 * 11 9 4 42 42 H 0.96994 * 120.00408 * 359.97438 * 12 11 9 43 43 H 1.08998 * 109.47338 * 299.99281 * 15 13 12 44 44 H 1.08999 * 109.47516 * 59.99738 * 15 13 12 45 45 H 1.07999 * 119.93352 * 0.02562 * 17 16 15 46 46 H 1.07997 * 119.96405 * 179.97438 * 18 17 16 47 47 H 1.08003 * 120.03585 * 180.02562 * 19 18 17 48 48 H 0.97002 * 119.99894 * 179.97438 * 25 24 22 49 49 H 1.07994 * 120.03654 * 359.97438 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3653 -2.1365 -0.0976 6 8 2.9998 -1.3262 -1.0832 7 6 4.3386 -1.4293 -0.5730 8 6 4.1906 -2.0894 0.8210 9 6 2.8650 -1.4466 1.3124 10 1 3.0501 -0.4706 1.7610 11 6 2.1429 -2.3710 2.2948 12 7 2.8657 -2.3896 3.5690 13 6 2.4106 -3.1413 4.5909 14 8 1.4025 -3.8019 4.4559 15 6 3.1538 -3.1600 5.9018 16 6 2.4426 -4.0706 6.8694 17 6 2.7744 -5.4122 6.9268 18 6 2.1245 -6.2508 7.8137 19 6 1.1419 -5.7506 8.6456 20 6 0.8066 -4.4043 8.5904 21 8 -0.1584 -3.9096 9.4071 22 6 -0.8320 -4.7972 10.1663 23 1 -0.5400 -5.8371 10.1687 24 6 -1.8994 -4.3750 10.9440 25 7 -2.2554 -3.1086 10.9407 26 14 -2.8322 -5.6046 11.9963 27 1 -2.2053 -5.6821 13.3402 28 1 -4.2448 -5.1677 12.1335 29 1 -2.7880 -6.9417 11.3518 30 6 1.4644 -3.5635 7.7017 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9352 0.0004 33 1 2.6902 1.3627 -0.8900 34 1 1.3553 2.1335 -0.0005 35 1 2.6902 1.3627 0.8899 36 1 4.9452 -2.0565 -1.2262 37 1 4.7849 -0.4392 -0.4790 38 1 4.0940 -3.1717 0.7349 39 1 5.0226 -1.8223 1.4724 40 1 1.1286 -2.0068 2.4578 41 1 2.1052 -3.3797 1.8837 42 1 3.6722 -1.8616 3.6769 43 1 4.1684 -3.5235 5.7391 44 1 3.1908 -2.1512 6.3130 45 1 3.5432 -5.8054 6.2782 46 1 2.3855 -7.2979 7.8559 47 1 0.6350 -6.4060 9.3384 48 1 -3.0024 -2.8133 11.4845 49 1 1.2092 -2.5150 7.6598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281337623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:07 Heat of formation + Delta-G solvation = -97.664254 kcal Electronic energy + Delta-G solvation = -29116.300503 eV Core-core repulsion = 25008.237411 eV Total energy + Delta-G solvation = -4108.063092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31602 -40.85788 -40.21674 -38.20864 -36.27849 -35.95772 -34.34513 -33.64955 -32.86816 -30.90339 -30.25881 -28.69761 -28.16342 -27.31370 -26.19197 -23.55558 -23.28862 -22.79878 -21.92628 -21.40611 -19.62908 -19.50353 -18.81806 -18.06353 -17.76008 -17.00397 -16.82250 -16.65630 -16.46738 -16.11435 -16.07475 -15.90586 -15.50552 -15.18404 -14.92496 -14.77891 -14.54006 -14.36963 -14.22935 -14.04144 -13.96518 -13.59659 -13.46450 -13.02494 -12.96745 -12.76816 -12.64059 -12.50148 -12.48535 -12.34109 -12.21199 -12.11523 -12.09212 -12.03261 -11.69579 -11.20869 -10.97426 -10.79323 -10.56051 -10.11182 -10.03886 -9.62771 -8.96991 -8.47293 -6.15667 0.52869 0.76620 1.17054 1.33305 1.43310 1.51405 1.69173 2.15625 2.19697 2.85232 2.98702 3.17297 3.41239 3.45966 3.55872 3.71215 3.83174 4.00145 4.05375 4.11695 4.17587 4.22462 4.26483 4.32983 4.36258 4.46011 4.58234 4.60894 4.66811 4.69878 4.74864 4.77501 4.79450 4.89201 4.90963 4.96806 4.99988 5.08246 5.10031 5.13170 5.22591 5.31782 5.43561 5.62923 5.65938 5.73653 5.76279 5.84669 6.02927 6.03982 6.24693 6.59148 6.97398 7.32441 7.79225 8.76367 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.001939 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.955634 B =14439.172384 C =15602.219293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.148 4.148 3 C -0.113 4.113 4 C 0.122 3.878 5 H 0.076 0.924 6 O -0.392 6.392 7 C 0.043 3.957 8 C -0.145 4.145 9 C -0.114 4.114 10 H 0.110 0.890 11 C 0.135 3.865 12 N -0.713 5.713 13 C 0.513 3.487 14 O -0.581 6.581 15 C -0.090 4.090 16 C -0.026 4.026 17 C -0.180 4.180 18 C -0.075 4.075 19 C -0.248 4.248 20 C 0.110 3.890 21 O -0.235 6.235 22 C -0.414 4.414 23 H 0.100 0.900 24 C -0.025 4.025 25 N -0.922 5.922 26 Si 1.020 2.980 27 H -0.260 1.260 28 H -0.271 1.271 29 H -0.255 1.255 30 C -0.193 4.193 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.419 0.581 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.117 0.883 48 H 0.272 0.728 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.315 5.138 -22.328 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.148 4.148 3 C -0.170 4.170 4 C 0.064 3.936 5 H 0.094 0.906 6 O -0.312 6.312 7 C -0.033 4.033 8 C -0.183 4.183 9 C -0.133 4.133 10 H 0.128 0.872 11 C 0.010 3.990 12 N -0.367 5.367 13 C 0.301 3.699 14 O -0.460 6.460 15 C -0.129 4.129 16 C -0.027 4.027 17 C -0.199 4.199 18 C -0.093 4.093 19 C -0.267 4.267 20 C 0.060 3.940 21 O -0.142 6.142 22 C -0.490 4.490 23 H 0.117 0.883 24 C -0.222 4.222 25 N -0.561 5.561 26 Si 0.839 3.161 27 H -0.185 1.185 28 H -0.195 1.195 29 H -0.179 1.179 30 C -0.212 4.212 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.257 0.743 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.327 5.052 -22.536 28.873 hybrid contribution -0.879 -0.151 0.886 1.257 sum 16.449 4.901 -21.650 27.628 Atomic orbital electron populations 1.23926 0.95353 1.02666 1.00659 1.22136 0.95611 0.96394 1.00691 1.20803 1.00390 0.93212 1.02580 1.21630 0.91148 0.94720 0.86082 0.90613 1.88472 1.16565 1.95100 1.31026 1.23597 0.83712 1.01073 0.94903 1.23397 0.97028 1.00975 0.96854 1.22887 0.95579 1.00476 0.94378 0.87235 1.21137 0.95301 0.99337 0.83182 1.45719 1.30548 1.48430 1.11988 1.20964 0.84505 0.78391 0.86064 1.90769 1.27322 1.44303 1.83559 1.20711 1.00631 1.01980 0.89599 1.19223 0.94338 0.94840 0.94251 1.20987 1.04020 0.92709 1.02144 1.21140 0.93777 1.00403 0.93951 1.21295 1.04360 0.95016 1.06037 1.19898 0.89763 0.93589 0.90710 1.83931 1.44185 1.36814 1.49227 1.21817 1.12823 0.91576 1.22761 0.88292 1.26616 0.97056 0.99421 0.99136 1.70190 1.28336 1.16966 1.40580 0.84576 0.76988 0.76858 0.77695 1.18457 1.19544 1.17889 1.20236 1.01727 0.99077 1.00208 0.87129 0.88665 0.91313 0.91546 0.90679 0.88646 0.90791 0.90365 0.86896 0.93246 0.92157 0.74274 0.83509 0.85920 0.83379 0.83755 0.86555 0.91868 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 13.93 67.79 0.94 -2.16 16 2 C -0.15 -2.33 5.07 -16.48 -0.08 -2.41 16 3 C -0.11 -1.37 9.79 71.24 0.70 -0.67 16 4 C 0.12 1.90 3.35 30.32 0.10 2.01 16 5 H 0.08 1.34 7.49 -2.39 -0.02 1.32 16 6 O -0.39 -6.58 10.85 -148.98 -1.62 -8.20 16 7 C 0.04 0.41 7.78 72.65 0.56 0.97 16 8 C -0.15 -1.11 6.55 32.05 0.21 -0.90 16 9 C -0.11 -1.30 2.47 -9.53 -0.02 -1.32 16 10 H 0.11 0.99 6.69 -2.39 -0.02 0.97 16 11 C 0.13 2.34 4.98 86.38 0.43 2.77 16 12 N -0.71 -11.41 5.49 -463.06 -2.54 -13.96 16 13 C 0.51 13.18 7.82 87.66 0.69 13.86 16 14 O -0.58 -22.32 16.03 -3.02 -0.05 -22.37 16 15 C -0.09 -1.96 5.83 29.11 0.17 -1.79 16 16 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 17 C -0.18 -5.86 9.70 22.30 0.22 -5.65 16 18 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 19 C -0.25 -11.54 9.17 22.39 0.21 -11.34 16 20 C 0.11 5.86 6.65 22.58 0.15 6.01 16 21 O -0.23 -14.85 9.76 -22.77 -0.22 -15.07 16 22 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 23 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 24 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 25 N -0.92 -58.44 13.67 21.61 0.30 -58.15 16 26 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 27 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 30 C -0.19 -8.73 9.64 22.39 0.22 -8.52 16 31 H 0.11 1.58 7.83 -2.91 -0.02 1.55 16 32 H 0.09 1.60 7.86 -2.91 -0.02 1.58 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.07 0.74 7.78 -2.39 -0.02 0.72 16 35 H 0.07 0.72 7.07 -2.39 -0.02 0.70 16 36 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.73 7.93 -2.39 -0.02 0.71 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.20 7.99 -2.39 -0.02 1.18 16 42 H 0.42 3.19 8.47 -92.71 -0.79 2.40 16 43 H 0.15 1.83 8.09 -2.39 -0.02 1.81 16 44 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 46 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 47 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -86.61 408.09 3.80 -82.81 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.17 Total: 26.65 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 5.73 Total: -38.22 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.25 Total: -72.10 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.89 Total: -45.64 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -86.61 3.80 -82.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281337623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.853 kcal (2) G-P(sol) polarization free energy of solvation -86.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds