Wall clock time and date at job start Wed Apr 1 2020 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.05037 * 2 1 4 4 C 1.54260 * 110.02903 * 238.58611 * 2 1 3 5 5 C 1.54889 * 104.19411 * 217.10226 * 4 2 1 6 6 C 1.54889 * 102.74728 * 37.94300 * 5 4 2 7 7 C 1.53869 * 110.03612 * 121.41531 * 2 1 3 8 8 O 1.42894 * 110.07530 * 238.59290 * 7 2 1 9 9 C 1.53003 * 110.02973 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46701 * 178.61877 * 9 7 2 11 11 C 1.34780 * 119.99546 * 179.97438 * 10 9 7 12 12 O 1.21721 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.46255 * 120.00009 * 179.97438 * 11 10 9 14 14 C 1.35019 * 120.00395 * 180.02562 * 13 11 10 15 15 C 1.46958 * 120.00521 * 180.02562 * 14 13 11 16 16 C 1.40030 * 120.09687 * 359.72943 * 15 14 13 17 17 C 1.37595 * 119.89622 * 179.69680 * 16 15 14 18 18 C 1.39179 * 120.09977 * 0.60076 * 17 16 15 19 19 O 1.35577 * 119.89729 * 179.69868 * 18 17 16 20 20 C 1.34780 * 116.99626 * 174.42236 * 19 18 17 21 21 H 1.07994 * 120.00517 * 5.05357 * 20 19 18 22 22 C 1.38721 * 119.99596 * 185.05454 * 20 19 18 23 23 N 1.31504 * 120.00125 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47351 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46989 * 120.00292 * 24 22 20 27 27 H 1.48510 * 109.47123 * 240.00024 * 24 22 20 28 28 C 1.39178 * 120.20459 * 359.67209 * 18 17 16 29 29 C 1.37596 * 120.09658 * 0.02686 * 28 18 17 30 30 H 1.09006 * 109.46584 * 298.57929 * 1 2 3 31 31 H 1.08999 * 109.47271 * 58.57781 * 1 2 3 32 32 H 1.08995 * 109.46967 * 178.58641 * 1 2 3 33 33 H 1.09005 * 110.48958 * 98.42615 * 4 2 1 34 34 H 1.08995 * 110.48950 * 335.78227 * 4 2 1 35 35 H 1.09004 * 110.75944 * 279.62619 * 5 4 2 36 36 H 1.09002 * 110.75738 * 156.25942 * 5 4 2 37 37 H 1.09001 * 110.48581 * 203.37872 * 6 5 4 38 38 H 1.08996 * 110.48767 * 80.73835 * 6 5 4 39 39 H 0.96707 * 114.00066 * 180.71777 * 8 7 2 40 40 H 1.09003 * 109.47228 * 298.61468 * 9 7 2 41 41 H 1.08996 * 109.47358 * 58.61956 * 9 7 2 42 42 H 0.96994 * 120.00530 * 0.02562 * 10 9 7 43 43 H 1.08006 * 119.99481 * 0.02562 * 13 11 10 44 44 H 1.08005 * 119.99595 * 0.02562 * 14 13 11 45 45 H 1.08004 * 120.04851 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.95339 * 180.27140 * 17 16 15 47 47 H 0.96996 * 120.00099 * 179.97438 * 23 22 20 48 48 H 1.07992 * 119.95023 * 179.97438 * 28 18 17 49 49 H 1.08002 * 120.04678 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3136 -1.5006 -0.7192 6 6 2.8875 -1.9406 0.7034 7 6 2.0572 -0.7535 1.2337 8 8 2.8823 0.1088 2.0195 9 6 0.8863 -1.2674 2.0738 10 7 1.4015 -2.0104 3.2265 11 6 0.5458 -2.5583 4.1122 12 8 -0.6548 -2.4361 3.9540 13 6 1.0600 -3.3006 5.2627 14 6 0.2030 -3.8499 6.1496 15 6 0.7196 -4.5953 7.3060 16 6 2.1004 -4.7420 7.4869 17 6 2.5797 -5.4353 8.5744 18 6 1.6943 -6.0012 9.4871 19 8 2.1710 -6.6887 10.5539 20 6 1.2691 -7.1125 11.4613 21 1 0.2137 -6.9719 11.2802 22 6 1.6964 -7.7294 12.6280 23 7 2.9814 -7.9011 12.8484 24 14 0.4464 -8.3161 13.8861 25 1 -0.9236 -8.0061 13.4044 26 1 0.5853 -9.7825 14.0751 27 1 0.6840 -7.6256 15.1792 28 6 0.3210 -5.8628 9.3082 29 6 -0.1673 -5.1659 8.2270 30 1 -0.3633 0.4917 0.9025 31 1 -0.3634 0.5358 -0.8769 32 1 -0.3633 -1.0273 -0.0254 33 1 2.3296 -0.0535 -2.0255 34 1 1.3142 -1.4659 -1.5966 35 1 4.1710 -0.8290 -0.6753 36 1 3.5325 -2.3678 -1.3424 37 1 3.7638 -2.1037 1.3308 38 1 2.2772 -2.8425 0.6571 39 1 3.2542 -0.3125 2.8066 40 1 0.2910 -0.4233 2.4222 41 1 0.2641 -1.9246 1.4664 42 1 2.3583 -2.1075 3.3528 43 1 2.1254 -3.4093 5.4027 44 1 -0.8624 -3.7415 6.0092 45 1 2.7881 -4.3076 6.7763 46 1 3.6446 -5.5453 8.7172 47 1 3.2802 -8.3320 13.6644 48 1 -0.3623 -6.3039 10.0187 49 1 -1.2331 -5.0586 8.0892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294088204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:46 Heat of formation + Delta-G solvation = -87.687862 kcal Electronic energy + Delta-G solvation = -28624.197673 eV Core-core repulsion = 24516.567189 eV Total energy + Delta-G solvation = -4107.630484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58629 -39.31784 -38.96480 -36.91630 -35.66721 -34.37074 -33.23519 -32.33083 -31.97046 -30.45826 -29.60401 -28.11857 -25.91467 -25.54808 -24.87424 -23.00351 -22.17767 -21.55347 -20.69869 -19.74709 -19.14951 -18.24765 -17.50098 -17.19819 -17.00384 -16.17605 -15.82904 -15.39512 -15.16057 -14.80454 -14.76042 -14.42509 -14.20572 -14.03989 -13.85493 -13.66787 -13.52709 -13.25556 -13.06792 -12.94973 -12.61817 -12.53418 -12.10047 -11.96707 -11.84938 -11.77839 -11.74014 -11.50569 -11.16259 -11.12293 -11.10648 -11.03376 -10.81792 -10.68383 -10.54713 -10.29577 -9.83850 -9.63885 -9.51709 -9.20475 -8.87583 -8.40720 -7.14077 -6.67350 -4.22081 1.03809 2.11253 2.52835 3.02145 3.03568 3.09276 3.10422 3.53236 3.66856 3.80502 4.00914 4.15505 4.24379 4.48686 4.70215 4.84272 4.86906 4.90111 4.95891 5.01803 5.02178 5.06603 5.11673 5.24044 5.29890 5.39367 5.45398 5.47341 5.50695 5.51171 5.59660 5.64100 5.65070 5.71776 5.76850 5.85916 5.97067 5.98940 6.09248 6.26479 6.43798 6.45259 6.57966 6.76626 6.89771 7.10676 7.20933 7.21810 7.25603 7.44744 7.61531 7.78139 8.28154 8.77578 9.44321 10.49303 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030640 B = 0.001540 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.621538 B =18175.815849 C =18755.609965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.152 4.152 7 C 0.122 3.878 8 O -0.552 6.552 9 C 0.097 3.903 10 N -0.736 5.736 11 C 0.557 3.443 12 O -0.557 6.557 13 C -0.286 4.286 14 C 0.041 3.959 15 C -0.200 4.200 16 C -0.042 4.042 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.374 0.626 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.395 0.605 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.274 0.726 48 H 0.131 0.869 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 12.100 -23.097 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.190 4.190 7 C 0.081 3.919 8 O -0.358 6.358 9 C -0.027 4.027 10 N -0.389 5.389 11 C 0.349 3.651 12 O -0.437 6.437 13 C -0.307 4.307 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.469 4.469 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.229 0.771 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.084 0.916 48 H 0.149 0.851 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.090 12.430 -23.402 26.520 hybrid contribution 0.074 -0.785 1.184 1.423 sum -1.016 11.645 -22.218 25.105 Atomic orbital electron populations 1.22033 0.94137 1.02508 1.02435 1.21653 0.95886 1.00392 0.91959 0.89369 1.22474 0.97450 0.99064 0.96815 1.22436 0.97912 1.00025 0.95515 1.23106 1.00047 0.98118 0.97736 1.22165 0.89097 0.89727 0.90910 1.86599 1.67449 1.41133 1.40635 1.22254 0.96517 0.96542 0.87398 1.45845 1.09766 1.56807 1.26444 1.18403 0.85891 0.78267 0.82506 1.90780 1.15468 1.61079 1.76378 1.22408 1.00335 1.09426 0.98489 1.22290 0.99258 0.87014 0.89360 1.18456 0.93367 1.09382 0.98893 1.20874 0.94059 0.95658 0.95482 1.20151 0.99040 1.05712 0.96983 1.19618 0.91965 0.89058 0.88312 1.83904 1.36555 1.58414 1.27423 1.21533 0.89080 1.38582 0.97661 0.88457 1.25401 0.97319 0.96430 0.97324 1.70018 1.13755 1.38506 1.26113 0.85578 0.79374 0.78687 0.79446 1.18850 1.19906 1.19894 1.21103 0.95366 1.08014 1.01661 1.20990 0.98242 0.93612 0.92432 0.91841 0.92106 0.91911 0.91196 0.91113 0.91125 0.91306 0.90855 0.90341 0.77786 0.90593 0.90402 0.77123 0.85911 0.85947 0.86438 0.86124 0.91623 0.85101 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.89 37.16 0.29 -0.73 16 2 C -0.08 -0.56 3.31 -89.51 -0.30 -0.85 16 3 H 0.09 0.69 7.96 -51.93 -0.41 0.27 16 4 C -0.12 -0.70 6.36 -25.08 -0.16 -0.86 16 5 C -0.12 -0.72 6.91 -24.74 -0.17 -0.89 16 6 C -0.15 -0.97 5.48 -25.07 -0.14 -1.10 16 7 C 0.12 0.90 1.03 -89.50 -0.09 0.81 16 8 O -0.55 -4.50 12.90 -35.23 -0.45 -4.95 16 9 C 0.10 0.88 3.48 -4.04 -0.01 0.87 16 10 N -0.74 -7.05 5.11 -61.75 -0.32 -7.36 16 11 C 0.56 7.53 7.74 -13.04 -0.10 7.42 16 12 O -0.56 -9.57 16.23 5.17 0.08 -9.48 16 13 C -0.29 -3.75 9.41 -37.51 -0.35 -4.11 16 14 C 0.04 0.60 9.45 -37.20 -0.35 0.25 16 15 C -0.20 -3.35 5.87 -105.03 -0.62 -3.97 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -3.93 9.97 -39.47 -0.39 -4.32 16 18 C 0.17 3.80 6.66 -38.88 -0.26 3.54 16 19 O -0.16 -4.37 9.74 0.72 0.01 -4.36 16 20 C -0.39 -10.37 9.48 30.91 0.29 -10.08 16 21 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 24 Si 0.95 19.40 29.55 -169.99 -5.02 14.38 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 29 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 30 H 0.06 0.47 6.78 -51.93 -0.35 0.12 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 38 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 39 H 0.37 2.05 7.89 45.56 0.36 2.41 16 40 H 0.08 0.81 6.82 -51.93 -0.35 0.46 16 41 H 0.08 0.76 6.65 -51.93 -0.35 0.41 16 42 H 0.39 2.68 7.20 -40.82 -0.29 2.39 16 43 H 0.12 1.35 6.07 -52.48 -0.32 1.04 16 44 H 0.12 1.83 7.52 -52.48 -0.39 1.43 16 45 H 0.12 1.57 6.16 -52.48 -0.32 1.25 16 46 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 49 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -31.46 396.64 -8.79 -40.25 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.25 Total: 8.88 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.57 Total: -20.42 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.44 Total: -30.27 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.36 Total: -18.79 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.46 -8.79 -40.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294088204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.441 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds