Wall clock time and date at job start Wed Apr 1 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.01517 * 2 1 4 4 C 1.54264 * 110.03353 * 121.43828 * 2 1 3 5 5 C 1.54897 * 104.19665 * 142.89918 * 4 2 1 6 6 C 1.54887 * 102.74526 * 322.05592 * 5 4 2 7 7 C 1.53877 * 110.03686 * 238.60741 * 2 1 3 8 8 O 1.42898 * 110.03245 * 121.37590 * 7 2 1 9 9 C 1.53001 * 110.02798 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47070 * 185.00067 * 9 7 2 11 11 C 1.34774 * 120.00329 * 180.27391 * 10 9 7 12 12 O 1.21721 * 119.99600 * 359.72529 * 11 10 9 13 13 C 1.46253 * 120.00239 * 179.72455 * 11 10 9 14 14 C 1.35030 * 119.99982 * 179.97438 * 13 11 10 15 15 C 1.46961 * 120.00091 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.09726 * 359.72799 * 15 14 13 17 17 C 1.37596 * 119.89424 * 179.76342 * 16 15 14 18 18 C 1.39178 * 120.10140 * 0.48696 * 17 16 15 19 19 O 1.35567 * 119.89986 * 179.73980 * 18 17 16 20 20 C 1.34782 * 117.00090 * 174.46706 * 19 18 17 21 21 H 1.07998 * 119.99984 * 5.06173 * 20 19 18 22 22 C 1.38720 * 120.00292 * 185.06126 * 20 19 18 23 23 N 1.31513 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00329 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.46972 * 59.99691 * 24 22 20 26 26 H 1.48500 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46908 * 299.99667 * 24 22 20 28 28 C 1.39176 * 120.20468 * 359.76827 * 18 17 16 29 29 C 1.37604 * 120.09827 * 359.97438 * 28 18 17 30 30 H 1.09001 * 109.46880 * 181.39604 * 1 2 3 31 31 H 1.08995 * 109.47255 * 301.39060 * 1 2 3 32 32 H 1.08995 * 109.47339 * 61.39550 * 1 2 3 33 33 H 1.09006 * 110.48534 * 261.56982 * 4 2 1 34 34 H 1.08990 * 110.49036 * 24.08473 * 4 2 1 35 35 H 1.09003 * 110.75341 * 80.37042 * 5 4 2 36 36 H 1.08998 * 110.75321 * 203.55859 * 5 4 2 37 37 H 1.08998 * 110.48908 * 279.26368 * 6 5 4 38 38 H 1.09000 * 110.48190 * 156.62149 * 6 5 4 39 39 H 0.96701 * 113.99674 * 179.31039 * 8 7 2 40 40 H 1.09000 * 109.47514 * 65.00273 * 9 7 2 41 41 H 1.09007 * 109.47163 * 305.00008 * 9 7 2 42 42 H 0.96999 * 119.99831 * 359.97438 * 10 9 7 43 43 H 1.08000 * 120.00433 * 359.97438 * 13 11 10 44 44 H 1.08000 * 119.99585 * 359.97438 * 14 13 11 45 45 H 1.07998 * 120.05302 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.94960 * 180.22842 * 17 16 15 47 47 H 0.97002 * 120.00192 * 180.02562 * 23 22 20 48 48 H 1.07998 * 119.95067 * 179.97438 * 28 18 17 49 49 H 1.08004 * 120.04674 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2365 5 6 3.3138 -1.5009 0.7185 6 6 2.8876 -1.9403 -0.7042 7 6 2.0572 -0.7530 -1.2340 8 8 2.8816 0.1106 -2.0192 9 6 0.8863 -1.2666 -2.0743 10 7 1.3982 -2.0815 -3.1788 11 6 0.5424 -2.6379 -4.0589 12 8 -0.6562 -2.4672 -3.9331 13 6 1.0539 -3.4465 -5.1650 14 6 0.1965 -4.0043 -6.0464 15 6 0.7104 -4.8164 -7.1582 16 6 2.0893 -5.0084 -7.3087 17 6 2.5657 -5.7736 -8.3483 18 6 1.6800 -6.3479 -9.2554 19 8 2.1541 -7.0967 -10.2812 20 6 1.2439 -7.7188 -11.0565 21 1 0.1900 -7.5436 -10.8985 22 6 1.6607 -8.5840 -12.0575 23 7 2.9441 -8.7969 -12.2503 24 14 0.3992 -9.4456 -13.1325 25 1 -0.4144 -8.4319 -13.8504 26 1 1.0966 -10.3090 -14.1191 27 1 -0.4875 -10.2806 -12.2828 28 6 0.3090 -6.1554 -9.1128 29 6 -0.1768 -5.3961 -8.0732 30 1 -0.3633 -1.0274 0.0250 31 1 -0.3633 0.5352 0.8772 32 1 -0.3634 0.4920 -0.9022 33 1 2.3298 -0.0543 2.0254 34 1 1.3135 -1.4649 1.5975 35 1 4.1711 -0.8291 0.6748 36 1 3.5345 -2.3664 1.3433 37 1 2.2773 -2.8423 -0.6582 38 1 3.7639 -2.1031 -1.3317 39 1 3.2533 -0.3096 -2.8068 40 1 0.3282 -0.4205 -2.4755 41 1 0.2291 -1.8722 -1.4501 42 1 2.3534 -2.2172 -3.2792 43 1 2.1174 -3.5976 -5.2768 44 1 -0.8671 -3.8536 -5.9343 45 1 2.7776 -4.5595 -6.6079 46 1 3.6288 -5.9253 -8.4631 47 1 3.2356 -9.4016 -12.9504 48 1 -0.3746 -6.6026 -9.8193 49 1 -1.2409 -5.2469 -7.9636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294088213.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:53 Heat of formation + Delta-G solvation = -87.645501 kcal Electronic energy + Delta-G solvation = -28630.846469 eV Core-core repulsion = 24523.217822 eV Total energy + Delta-G solvation = -4107.628647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58517 -39.31621 -38.96246 -36.91511 -35.64906 -34.38625 -33.23278 -32.32913 -31.97710 -30.45700 -29.58628 -28.11058 -25.91603 -25.54999 -24.87660 -23.01197 -22.17964 -21.55962 -20.67712 -19.73785 -19.14351 -18.23923 -17.48339 -17.19336 -17.00510 -16.18713 -15.85441 -15.38968 -15.14742 -14.80489 -14.76322 -14.42785 -14.20869 -14.04875 -13.85535 -13.65094 -13.53001 -13.25983 -13.05822 -12.92648 -12.61703 -12.53837 -12.10055 -11.95363 -11.84834 -11.77643 -11.74569 -11.50433 -11.12678 -11.12079 -11.10772 -11.03079 -10.81862 -10.72387 -10.56332 -10.29449 -9.83503 -9.63302 -9.52248 -9.20068 -8.86855 -8.40611 -7.13970 -6.66918 -4.21857 1.03959 2.11350 2.53166 3.02940 3.04442 3.06950 3.11143 3.53505 3.67375 3.80826 4.00983 4.15436 4.24585 4.48780 4.70168 4.84259 4.86631 4.90328 4.96246 5.01576 5.02059 5.06445 5.12072 5.24206 5.29992 5.39838 5.45833 5.47377 5.51228 5.51292 5.59849 5.64232 5.65509 5.71658 5.77178 5.85680 5.97200 5.98899 6.09336 6.27012 6.43950 6.45353 6.58015 6.76724 6.89377 7.10547 7.21175 7.22283 7.25594 7.45139 7.61633 7.78176 8.28424 8.77636 9.44280 10.49496 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.001545 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.005831 B =18119.103263 C =18684.057435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.152 4.152 7 C 0.122 3.878 8 O -0.553 6.553 9 C 0.096 3.904 10 N -0.736 5.736 11 C 0.557 3.443 12 O -0.557 6.557 13 C -0.286 4.286 14 C 0.041 3.959 15 C -0.200 4.200 16 C -0.042 4.042 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.161 6.161 20 C -0.394 4.394 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.267 1.267 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.375 0.625 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.395 0.605 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.275 0.725 48 H 0.131 0.869 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 13.462 22.136 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.190 4.190 7 C 0.081 3.919 8 O -0.359 6.359 9 C -0.028 4.028 10 N -0.389 5.389 11 C 0.349 3.651 12 O -0.437 6.437 13 C -0.307 4.307 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.062 6.062 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.164 4.164 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 C -0.262 4.262 29 C -0.053 4.053 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.222 0.778 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.229 0.771 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.085 0.915 48 H 0.149 0.851 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.001 13.802 22.427 26.353 hybrid contribution 0.053 -0.918 -1.085 1.422 sum -0.949 12.884 21.342 24.947 Atomic orbital electron populations 1.22035 0.94147 1.02491 1.02438 1.21654 0.95882 1.00387 0.91968 0.89373 1.22473 0.97456 0.99074 0.96805 1.22428 0.97888 1.00047 0.95500 1.23097 1.00034 0.98155 0.97738 1.22162 0.89104 0.89715 0.90910 1.86596 1.67505 1.41129 1.40625 1.22264 0.96563 0.95430 0.88522 1.45860 1.10009 1.53626 1.29386 1.18405 0.85855 0.78898 0.81934 1.90780 1.15612 1.62013 1.75315 1.22410 1.00383 1.08364 0.99516 1.22294 0.99214 0.87280 0.89133 1.18456 0.93418 1.08351 0.99894 1.20872 0.94074 0.95310 0.95812 1.20149 0.99115 1.05373 0.97261 1.19615 0.91969 0.90135 0.87253 1.83901 1.36001 1.52630 1.33701 1.21435 0.88907 1.24072 1.12517 0.88568 1.25398 0.97382 0.96360 0.97286 1.70004 1.14053 1.33522 1.30821 0.85710 0.79151 0.79175 0.79086 1.19243 1.20065 1.19236 1.21102 0.95451 1.07121 1.02490 1.20992 0.98225 0.93528 0.92525 0.91889 0.92114 0.91859 0.91216 0.91110 0.91144 0.91297 0.90296 0.90846 0.77752 0.90651 0.90281 0.77075 0.85916 0.85948 0.86442 0.86127 0.91522 0.85111 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.88 37.16 0.29 -0.73 16 2 C -0.08 -0.56 3.31 -89.50 -0.30 -0.85 16 3 H 0.09 0.68 7.96 -51.93 -0.41 0.27 16 4 C -0.12 -0.70 6.36 -25.07 -0.16 -0.86 16 5 C -0.12 -0.72 6.91 -24.74 -0.17 -0.89 16 6 C -0.15 -0.96 5.28 -25.07 -0.13 -1.10 16 7 C 0.12 0.90 1.04 -89.50 -0.09 0.81 16 8 O -0.55 -4.49 12.90 -35.23 -0.45 -4.95 16 9 C 0.10 0.88 3.51 -4.04 -0.01 0.86 16 10 N -0.74 -7.05 5.09 -61.76 -0.31 -7.36 16 11 C 0.56 7.52 7.74 -13.04 -0.10 7.42 16 12 O -0.56 -9.57 16.23 5.17 0.08 -9.49 16 13 C -0.29 -3.76 9.41 -37.50 -0.35 -4.11 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 15 C -0.20 -3.35 5.87 -105.03 -0.62 -3.97 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -3.94 9.97 -39.47 -0.39 -4.33 16 18 C 0.17 3.80 6.66 -38.88 -0.26 3.54 16 19 O -0.16 -4.35 9.74 0.75 0.01 -4.34 16 20 C -0.39 -10.39 9.48 30.91 0.29 -10.10 16 21 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.85 -23.66 13.67 55.48 0.76 -22.90 16 24 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 C -0.24 -4.97 9.14 -39.46 -0.36 -5.33 16 29 C -0.03 -0.60 9.78 -39.15 -0.38 -0.99 16 30 H 0.06 0.43 6.59 -51.93 -0.34 0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.47 6.88 -51.93 -0.36 0.11 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.39 7.83 -51.93 -0.41 -0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.53 7.85 -51.93 -0.41 0.13 16 38 H 0.07 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.37 2.05 8.14 45.56 0.37 2.42 16 40 H 0.08 0.81 7.04 -51.93 -0.37 0.44 16 41 H 0.08 0.77 6.42 -51.93 -0.33 0.44 16 42 H 0.40 2.70 7.27 -40.82 -0.30 2.40 16 43 H 0.12 1.36 6.06 -52.49 -0.32 1.04 16 44 H 0.12 1.83 7.52 -52.49 -0.39 1.43 16 45 H 0.12 1.57 6.16 -52.49 -0.32 1.25 16 46 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.13 2.65 5.62 -52.49 -0.29 2.35 16 49 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -31.40 396.78 -8.77 -40.17 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.25 Total: 8.99 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -3.56 Total: -20.45 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.44 Total: -30.26 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.36 Total: -18.78 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.40 -8.77 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294088213.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.477 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds