Wall clock time and date at job start Wed Apr 1 2020 04:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.01517 * 2 1 4 4 C 1.54264 * 110.03353 * 121.43828 * 2 1 3 5 5 C 1.54897 * 104.19665 * 142.89918 * 4 2 1 6 6 C 1.54887 * 102.74526 * 322.05592 * 5 4 2 7 7 C 1.53877 * 110.03686 * 238.60741 * 2 1 3 8 8 O 1.42898 * 110.03245 * 121.37590 * 7 2 1 9 9 C 1.53001 * 110.02798 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47070 * 185.00067 * 9 7 2 11 11 C 1.34774 * 120.00329 * 180.27391 * 10 9 7 12 12 O 1.21721 * 119.99600 * 359.72529 * 11 10 9 13 13 C 1.46253 * 120.00239 * 179.72455 * 11 10 9 14 14 C 1.35030 * 119.99982 * 179.97438 * 13 11 10 15 15 C 1.46961 * 120.00091 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.09726 * 359.72799 * 15 14 13 17 17 C 1.37596 * 119.89424 * 179.76342 * 16 15 14 18 18 C 1.39178 * 120.10140 * 0.48696 * 17 16 15 19 19 O 1.35567 * 119.89986 * 179.73980 * 18 17 16 20 20 C 1.34782 * 117.00090 * 174.46706 * 19 18 17 21 21 H 1.07998 * 119.99984 * 5.06173 * 20 19 18 22 22 C 1.38720 * 120.00292 * 185.06126 * 20 19 18 23 23 N 1.31513 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00329 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.46972 * 59.99691 * 24 22 20 26 26 H 1.48500 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46908 * 299.99667 * 24 22 20 28 28 C 1.39176 * 120.20468 * 359.76827 * 18 17 16 29 29 C 1.37604 * 120.09827 * 359.97438 * 28 18 17 30 30 H 1.09001 * 109.46880 * 181.39604 * 1 2 3 31 31 H 1.08995 * 109.47255 * 301.39060 * 1 2 3 32 32 H 1.08995 * 109.47339 * 61.39550 * 1 2 3 33 33 H 1.09006 * 110.48534 * 261.56982 * 4 2 1 34 34 H 1.08990 * 110.49036 * 24.08473 * 4 2 1 35 35 H 1.09003 * 110.75341 * 80.37042 * 5 4 2 36 36 H 1.08998 * 110.75321 * 203.55859 * 5 4 2 37 37 H 1.08998 * 110.48908 * 279.26368 * 6 5 4 38 38 H 1.09000 * 110.48190 * 156.62149 * 6 5 4 39 39 H 0.96701 * 113.99674 * 179.31039 * 8 7 2 40 40 H 1.09000 * 109.47514 * 65.00273 * 9 7 2 41 41 H 1.09007 * 109.47163 * 305.00008 * 9 7 2 42 42 H 0.96999 * 119.99831 * 359.97438 * 10 9 7 43 43 H 1.08000 * 120.00433 * 359.97438 * 13 11 10 44 44 H 1.08000 * 119.99585 * 359.97438 * 14 13 11 45 45 H 1.07998 * 120.05302 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.94960 * 180.22842 * 17 16 15 47 47 H 0.97002 * 120.00192 * 180.02562 * 23 22 20 48 48 H 1.07998 * 119.95067 * 179.97438 * 28 18 17 49 49 H 1.08004 * 120.04674 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2365 5 6 3.3138 -1.5009 0.7185 6 6 2.8876 -1.9403 -0.7042 7 6 2.0572 -0.7530 -1.2340 8 8 2.8816 0.1106 -2.0192 9 6 0.8863 -1.2666 -2.0743 10 7 1.3982 -2.0815 -3.1788 11 6 0.5424 -2.6379 -4.0589 12 8 -0.6562 -2.4672 -3.9331 13 6 1.0539 -3.4465 -5.1650 14 6 0.1965 -4.0043 -6.0464 15 6 0.7104 -4.8164 -7.1582 16 6 2.0893 -5.0084 -7.3087 17 6 2.5657 -5.7736 -8.3483 18 6 1.6800 -6.3479 -9.2554 19 8 2.1541 -7.0967 -10.2812 20 6 1.2439 -7.7188 -11.0565 21 1 0.1900 -7.5436 -10.8985 22 6 1.6607 -8.5840 -12.0575 23 7 2.9441 -8.7969 -12.2503 24 14 0.3992 -9.4456 -13.1325 25 1 -0.4144 -8.4319 -13.8504 26 1 1.0966 -10.3090 -14.1191 27 1 -0.4875 -10.2806 -12.2828 28 6 0.3090 -6.1554 -9.1128 29 6 -0.1768 -5.3961 -8.0732 30 1 -0.3633 -1.0274 0.0250 31 1 -0.3633 0.5352 0.8772 32 1 -0.3634 0.4920 -0.9022 33 1 2.3298 -0.0543 2.0254 34 1 1.3135 -1.4649 1.5975 35 1 4.1711 -0.8291 0.6748 36 1 3.5345 -2.3664 1.3433 37 1 2.2773 -2.8423 -0.6582 38 1 3.7639 -2.1031 -1.3317 39 1 3.2533 -0.3096 -2.8068 40 1 0.3282 -0.4205 -2.4755 41 1 0.2291 -1.8722 -1.4501 42 1 2.3534 -2.2172 -3.2792 43 1 2.1174 -3.5976 -5.2768 44 1 -0.8671 -3.8536 -5.9343 45 1 2.7776 -4.5595 -6.6079 46 1 3.6288 -5.9253 -8.4631 47 1 3.2356 -9.4016 -12.9504 48 1 -0.3746 -6.6026 -9.8193 49 1 -1.2409 -5.2469 -7.9636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294088213.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:52 Heat of formation + Delta-G solvation = -108.520516 kcal Electronic energy + Delta-G solvation = -28631.751677 eV Core-core repulsion = 24523.217822 eV Total energy + Delta-G solvation = -4108.533855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34145 -40.83423 -40.02441 -38.48351 -36.25566 -35.31182 -34.73579 -33.99335 -32.51779 -31.96521 -30.49616 -29.31839 -27.52451 -26.38900 -25.58908 -24.25337 -23.64604 -22.36054 -21.69836 -20.83268 -20.06534 -19.64416 -18.86493 -18.39280 -17.96741 -16.92055 -16.71404 -16.45200 -16.35884 -16.10569 -15.93923 -15.76718 -15.60723 -15.23965 -14.84668 -14.68578 -14.59229 -14.48226 -14.10427 -13.84105 -13.62128 -13.57670 -13.31434 -13.16044 -13.10201 -12.73725 -12.66952 -12.57157 -12.36856 -12.23436 -12.14387 -11.95321 -11.62925 -11.50586 -11.42994 -11.21501 -11.10809 -11.00256 -10.86791 -10.58232 -10.11149 -9.88881 -8.67864 -8.51931 -6.18170 -0.24765 0.58927 1.13566 1.35928 1.47287 1.51559 2.15559 2.19878 2.36140 2.86575 3.13053 3.18226 3.42772 3.44686 3.60100 3.66584 3.82600 3.95115 4.08896 4.18845 4.28588 4.32958 4.34163 4.36086 4.39121 4.47566 4.50339 4.59345 4.66159 4.75046 4.84044 4.90817 4.94998 4.95205 5.00448 5.02965 5.17582 5.19803 5.21912 5.23534 5.27657 5.32550 5.33768 5.42947 5.49230 5.58763 5.64243 5.81427 5.97354 6.10907 6.53202 6.75140 6.92304 7.25234 7.69295 8.69746 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.001545 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.005831 B =18119.103263 C =18684.057435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.128 3.872 8 O -0.565 6.565 9 C 0.099 3.901 10 N -0.714 5.714 11 C 0.551 3.449 12 O -0.594 6.594 13 C -0.245 4.245 14 C 0.016 3.984 15 C -0.171 4.171 16 C -0.036 4.036 17 C -0.207 4.207 18 C 0.129 3.871 19 O -0.219 6.219 20 C -0.418 4.418 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.257 1.257 28 C -0.250 4.250 29 C -0.041 4.041 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.386 0.614 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.413 0.587 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.162 0.838 46 H 0.123 0.877 47 H 0.275 0.725 48 H 0.124 0.876 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 15.087 25.181 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.156 4.156 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.373 6.373 9 C -0.025 4.025 10 N -0.367 5.367 11 C 0.342 3.658 12 O -0.477 6.477 13 C -0.266 4.266 14 C -0.004 4.004 15 C -0.172 4.172 16 C -0.054 4.054 17 C -0.226 4.226 18 C 0.077 3.923 19 O -0.124 6.124 20 C -0.494 4.494 21 H 0.122 0.878 22 C -0.216 4.216 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.269 4.269 29 C -0.059 4.059 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.235 0.765 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.250 0.750 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.179 0.821 46 H 0.141 0.859 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.364 15.480 25.541 29.897 hybrid contribution 0.118 -0.973 -1.449 1.750 sum -1.246 14.507 24.091 28.150 Atomic orbital electron populations 1.22014 0.94137 1.02406 1.02387 1.21690 0.95923 1.00066 0.92497 0.90253 1.22479 0.97556 0.99197 0.96401 1.22437 0.97709 1.00325 0.95367 1.23095 1.00200 0.97337 0.98220 1.22128 0.88487 0.90132 0.90538 1.86594 1.67522 1.41821 1.41353 1.22282 0.97307 0.94646 0.88249 1.45700 1.10616 1.52044 1.28314 1.18538 0.85608 0.79103 0.82512 1.90786 1.17413 1.63291 1.76209 1.22758 1.01658 1.04784 0.97393 1.22172 0.99745 0.88923 0.89581 1.18776 0.93396 1.05913 0.99074 1.21292 0.94824 0.94074 0.95223 1.20432 0.99160 1.05513 0.97509 1.20203 0.93640 0.90696 0.87747 1.83882 1.36833 1.55629 1.36093 1.21856 0.89492 1.24836 1.13198 0.87750 1.26598 0.99513 0.96952 0.98580 1.70141 1.16332 1.35837 1.32650 0.84655 0.76473 0.78074 0.77123 1.18150 1.19585 1.18163 1.21203 0.94632 1.07693 1.03371 1.21318 1.00114 0.92796 0.91671 0.91989 0.91099 0.92990 0.90527 0.90679 0.91364 0.90431 0.90445 0.89612 0.76478 0.92217 0.90631 0.75023 0.82810 0.85898 0.82059 0.85872 0.91596 0.85813 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 7.88 71.98 0.57 -1.24 16 2 C -0.08 -0.99 3.31 -10.07 -0.03 -1.03 16 3 H 0.08 1.11 7.96 -2.39 -0.02 1.09 16 4 C -0.12 -1.09 6.36 31.67 0.20 -0.89 16 5 C -0.12 -1.08 6.91 31.89 0.22 -0.86 16 6 C -0.15 -1.40 5.28 31.67 0.17 -1.24 16 7 C 0.13 1.55 1.04 -10.07 -0.01 1.54 16 8 O -0.57 -7.62 12.90 -148.98 -1.92 -9.54 16 9 C 0.10 1.57 3.51 86.38 0.30 1.87 16 10 N -0.71 -10.96 5.09 -467.50 -2.38 -13.34 16 11 C 0.55 12.80 7.74 86.33 0.67 13.47 16 12 O -0.59 -18.92 16.23 -4.42 -0.07 -18.99 16 13 C -0.25 -5.23 9.41 23.62 0.22 -5.00 16 14 C 0.02 0.40 9.45 23.82 0.23 0.63 16 15 C -0.17 -5.17 5.87 -20.13 -0.12 -5.29 16 16 C -0.04 -1.10 9.40 22.55 0.21 -0.89 16 17 C -0.21 -8.08 9.97 22.34 0.22 -7.86 16 18 C 0.13 6.10 6.66 22.72 0.15 6.25 16 19 O -0.22 -12.62 9.74 -20.24 -0.20 -12.82 16 20 C -0.42 -23.42 9.48 67.94 0.64 -22.77 16 21 H 0.11 5.34 5.18 -2.91 -0.02 5.32 16 22 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 23 N -0.91 -54.05 13.67 21.62 0.30 -53.76 16 24 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 27 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 28 C -0.25 -10.38 9.14 22.35 0.20 -10.18 16 29 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 30 H 0.06 0.74 6.59 -2.39 -0.02 0.73 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.73 6.88 -2.39 -0.02 0.71 16 33 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.07 0.64 7.83 -2.39 -0.02 0.62 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.77 7.85 -2.39 -0.02 0.75 16 38 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 39 H 0.39 2.88 8.14 -74.06 -0.60 2.28 16 40 H 0.06 1.18 7.04 -2.39 -0.02 1.16 16 41 H 0.08 1.31 6.42 -2.38 -0.02 1.29 16 42 H 0.41 3.63 7.27 -92.71 -0.67 2.95 16 43 H 0.15 2.33 6.06 -2.91 -0.02 2.31 16 44 H 0.12 3.27 7.52 -2.91 -0.02 3.25 16 45 H 0.16 3.38 6.16 -2.91 -0.02 3.36 16 46 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 47 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 48 H 0.12 5.21 5.62 -2.91 -0.02 5.20 16 49 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -73.69 396.78 2.01 -71.69 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.28 Total: 28.59 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.53 Total: -35.13 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -2.08 Total: -67.10 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -2.19 Total: -41.35 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -73.69 2.01 -71.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294088213.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.834 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds