Wall clock time and date at job start Wed Apr 1 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 O 1.42891 * 109.47557 * 239.99662 * 2 1 3 5 5 C 1.53007 * 109.46766 * 119.99646 * 2 1 3 6 6 H 1.09000 * 109.99737 * 64.85383 * 5 2 1 7 7 C 1.54330 * 109.99053 * 303.81542 * 5 2 1 8 8 C 1.55159 * 103.02129 * 218.66469 * 7 5 2 9 9 C 1.54910 * 101.57928 * 35.30884 * 8 7 5 10 10 N 1.47026 * 109.88192 * 185.94936 * 5 2 1 11 11 C 1.34777 * 125.64629 * 298.39993 * 10 5 2 12 12 O 1.21718 * 120.00127 * 353.95056 * 11 10 5 13 13 C 1.46257 * 119.99541 * 174.23001 * 11 10 5 14 14 C 1.35025 * 119.99958 * 179.97438 * 13 11 10 15 15 C 1.46958 * 119.99922 * 179.97438 * 14 13 11 16 16 C 1.40014 * 120.10433 * 359.73268 * 15 14 13 17 17 C 1.37596 * 119.89956 * 179.75775 * 16 15 14 18 18 C 1.39174 * 120.10204 * 0.49228 * 17 16 15 19 19 O 1.35570 * 119.90251 * 179.74131 * 18 17 16 20 20 C 1.34784 * 117.00291 * 185.43097 * 19 18 17 21 21 H 1.08009 * 119.99862 * 5.57847 * 20 19 18 22 22 C 1.38715 * 120.00348 * 185.57769 * 20 19 18 23 23 N 1.31511 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46954 * 90.00399 * 24 22 20 26 26 H 1.48496 * 109.47010 * 209.99959 * 24 22 20 27 27 H 1.48499 * 109.47090 * 330.00058 * 24 22 20 28 28 C 1.39181 * 120.20024 * 359.75989 * 18 17 16 29 29 C 1.37595 * 120.10257 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47748 * 305.23467 * 1 2 3 31 31 H 1.09001 * 109.46861 * 65.23127 * 1 2 3 32 32 H 1.08999 * 109.47384 * 185.22861 * 1 2 3 33 33 H 1.09008 * 109.47269 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47090 * 299.99523 * 3 2 1 35 35 H 1.09006 * 109.47679 * 59.99623 * 3 2 1 36 36 H 0.96701 * 114.00613 * 162.62693 * 4 2 1 37 37 H 1.09007 * 110.84825 * 100.20161 * 7 5 2 38 38 H 1.08994 * 110.51915 * 336.97768 * 7 5 2 39 39 H 1.08994 * 111.00607 * 277.23328 * 8 7 5 40 40 H 1.09002 * 111.03473 * 153.39784 * 8 7 5 41 41 H 1.08994 * 110.36708 * 204.14925 * 9 8 7 42 42 H 1.09009 * 110.36406 * 81.83134 * 9 8 7 43 43 H 1.08000 * 120.00235 * 359.97438 * 13 11 10 44 44 H 1.08000 * 119.99807 * 0.02562 * 14 13 11 45 45 H 1.08000 * 120.05130 * 359.97021 * 16 15 14 46 46 H 1.08005 * 119.95252 * 180.22882 * 17 16 15 47 47 H 0.96990 * 119.99990 * 180.02562 * 23 22 20 48 48 H 1.07997 * 119.94738 * 179.97438 * 28 18 17 49 49 H 1.07993 * 120.05300 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1666 5 6 2.0399 -0.7212 1.2494 6 1 1.7538 -1.7725 1.2158 7 6 1.4547 -0.0608 2.5156 8 6 2.6434 -0.1011 3.5120 9 6 3.8495 0.1246 2.5664 10 7 3.5031 -0.6037 1.3324 11 6 4.3818 -1.0779 0.4271 12 8 3.9896 -1.7562 -0.5044 13 6 5.8073 -0.7827 0.5676 14 6 6.6878 -1.2582 -0.3390 15 6 8.1201 -0.9611 -0.1982 16 6 8.5735 -0.1804 0.8721 17 6 9.9161 0.0911 1.0026 18 6 10.8218 -0.4005 0.0672 19 8 12.1431 -0.1261 0.1969 20 6 12.9536 -0.5344 -0.7997 21 1 12.5328 -0.9738 -1.6922 22 6 14.3279 -0.3905 -0.6791 23 7 14.8402 0.1449 0.4074 24 14 15.4511 -0.9570 -2.0600 25 1 15.6674 0.1615 -3.0125 26 1 16.7557 -1.3837 -1.4933 27 1 14.8232 -2.0991 -2.7717 28 6 10.3751 -1.1725 -1.0012 29 6 9.0349 -1.4528 -1.1374 30 1 -0.3634 0.5929 0.8394 31 1 -0.3633 0.4306 -0.9331 32 1 -0.3634 -1.0234 0.0936 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 2.9324 -0.4901 -1.3763 37 1 0.6112 -0.6354 2.8983 38 1 1.1599 0.9678 2.3084 39 1 2.7085 -1.0717 4.0035 40 1 2.5664 0.7015 4.2455 41 1 4.7585 -0.2856 3.0065 42 1 3.9743 1.1872 2.3577 43 1 6.1558 -0.1843 1.3964 44 1 6.3393 -1.8563 -1.1680 45 1 7.8709 0.2052 1.5960 46 1 10.2672 0.6901 1.8299 47 1 15.8011 0.2460 0.4915 48 1 11.0815 -1.5515 -1.7250 49 1 8.6893 -2.0522 -1.9665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305210329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:01 Heat of formation + Delta-G solvation = -68.761893 kcal Electronic energy + Delta-G solvation = -29740.001258 eV Core-core repulsion = 25633.191466 eV Total energy + Delta-G solvation = -4106.809792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84096 -39.22834 -38.10043 -36.86183 -36.71771 -33.24627 -32.65305 -32.29577 -31.54896 -30.45505 -28.74561 -28.06711 -27.50892 -25.74305 -24.54307 -22.79397 -22.18583 -22.05630 -20.74504 -19.42617 -18.66905 -18.09727 -17.53060 -17.29874 -17.00992 -16.19759 -15.48322 -15.16545 -14.88670 -14.77438 -14.49107 -14.19344 -14.06667 -13.84120 -13.66349 -13.45306 -13.33762 -13.05523 -12.97081 -12.60944 -12.49799 -12.42678 -12.31434 -12.04583 -11.92935 -11.78393 -11.76720 -11.75142 -11.45638 -11.19931 -11.14332 -11.09011 -10.74315 -10.68216 -10.55321 -10.06719 -9.74232 -9.63860 -9.52801 -8.90181 -8.62046 -8.40934 -7.14237 -6.67836 -4.22455 1.01706 2.11031 2.49764 2.89685 3.02439 3.03120 3.08141 3.47848 3.80229 4.03405 4.18303 4.35510 4.46915 4.50662 4.68145 4.75394 4.81711 4.91954 4.92893 4.98890 5.02379 5.14723 5.24147 5.28149 5.34972 5.42096 5.44952 5.49159 5.50412 5.57252 5.59863 5.64476 5.70971 5.74007 5.84691 5.92214 5.98356 5.99557 6.09159 6.16849 6.43542 6.51020 6.59431 6.76469 6.89597 7.10062 7.21132 7.25000 7.47230 7.61318 7.77512 7.81301 8.28856 8.76983 9.43774 10.48739 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.001870 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.458854 B =14967.191806 C =15594.422222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 C -0.180 4.180 4 O -0.552 6.552 5 C 0.117 3.883 6 H 0.079 0.921 7 C -0.130 4.130 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.616 5.616 11 C 0.566 3.434 12 O -0.540 6.540 13 C -0.284 4.284 14 C 0.041 3.959 15 C -0.200 4.200 16 C -0.042 4.042 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.161 6.161 20 C -0.392 4.392 21 H 0.097 0.903 22 C 0.041 3.959 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.265 1.265 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.380 0.620 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.274 0.726 48 H 0.131 0.869 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.525 2.152 4.667 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.077 3.923 3 C -0.237 4.237 4 O -0.364 6.364 5 C 0.013 3.987 6 H 0.097 0.903 7 C -0.168 4.168 8 C -0.172 4.172 9 C -0.024 4.024 10 N -0.350 5.350 11 C 0.361 3.639 12 O -0.421 6.421 13 C -0.305 4.305 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.060 4.060 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.062 6.062 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.189 1.189 28 C -0.261 4.261 29 C -0.052 4.052 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.084 0.916 48 H 0.149 0.851 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.830 1.727 4.393 24.293 hybrid contribution 1.241 -0.021 -0.473 1.329 sum -22.589 1.706 3.920 22.990 Atomic orbital electron populations 1.21775 0.92806 1.02636 1.02386 1.21438 0.94525 0.90719 0.85664 1.22552 1.01981 0.96689 1.02494 1.86520 1.33834 1.72006 1.44054 1.22254 0.80562 1.00607 0.95315 0.90259 1.22789 0.98184 1.01786 0.93994 1.22787 0.94077 1.03048 0.97241 1.22339 0.98666 0.96826 0.84529 1.48422 1.05886 1.57480 1.23210 1.18215 0.86366 0.78371 0.80954 1.90728 1.79938 1.38612 1.32810 1.22434 0.91232 1.11674 1.05134 1.22312 0.91386 0.89597 0.94578 1.18447 0.91854 1.09264 1.00544 1.20857 0.94250 0.95155 0.95765 1.20138 0.91916 1.07955 1.01919 1.19630 0.85404 0.91185 0.92757 1.83920 1.12321 1.66399 1.43580 1.21474 0.87243 1.42142 0.95931 0.88545 1.25406 0.96409 0.96325 0.98359 1.70009 1.13434 1.38852 1.26068 0.85642 0.78965 0.79246 0.79260 1.19606 1.20038 1.18934 1.21111 0.96057 1.06654 1.02294 1.20994 0.92452 0.95555 0.96230 0.91318 0.91758 0.91935 0.92120 0.91939 0.91517 0.76563 0.89968 0.90036 0.90499 0.89708 0.90180 0.91334 0.85972 0.85838 0.86546 0.86147 0.91563 0.85098 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.43 37.16 0.31 -0.82 16 2 C 0.12 1.22 0.94 -90.62 -0.09 1.14 16 3 C -0.18 -1.59 8.22 37.15 0.31 -1.29 16 4 O -0.55 -7.89 11.64 -58.86 -0.69 -8.57 16 5 C 0.12 1.14 2.53 -66.94 -0.17 0.97 16 6 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.13 -0.80 5.27 -24.89 -0.13 -0.93 16 8 C -0.13 -0.77 7.09 -24.58 -0.17 -0.95 16 9 C 0.10 0.77 6.41 -2.53 -0.02 0.76 16 10 N -0.62 -6.63 2.10 -164.69 -0.35 -6.97 16 11 C 0.57 7.79 6.88 -13.04 -0.09 7.70 16 12 O -0.54 -9.01 12.91 -18.46 -0.24 -9.25 16 13 C -0.28 -3.80 8.84 -37.50 -0.33 -4.13 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 15 C -0.20 -3.34 5.87 -105.03 -0.62 -3.96 16 16 C -0.04 -0.70 9.40 -39.15 -0.37 -1.07 16 17 C -0.20 -3.93 9.97 -39.47 -0.39 -4.33 16 18 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 19 O -0.16 -4.34 9.74 0.73 0.01 -4.33 16 20 C -0.39 -10.34 9.44 30.91 0.29 -10.05 16 21 H 0.10 2.34 5.27 -52.48 -0.28 2.06 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 24 Si 0.94 19.39 29.55 -169.99 -5.02 14.37 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 C -0.24 -4.95 9.11 -39.47 -0.36 -5.31 16 29 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 30 H 0.07 0.40 7.00 -51.93 -0.36 0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 7.36 -51.92 -0.38 0.23 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.46 6.30 -51.93 -0.33 0.13 16 36 H 0.38 5.64 5.78 45.56 0.26 5.90 16 37 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.08 0.43 5.47 -51.93 -0.28 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.61 7.38 -51.93 -0.38 0.23 16 42 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 43 H 0.12 1.44 5.01 -52.49 -0.26 1.18 16 44 H 0.12 1.81 7.52 -52.49 -0.39 1.42 16 45 H 0.12 1.58 6.16 -52.49 -0.32 1.26 16 46 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.13 2.66 5.69 -52.49 -0.30 2.37 16 49 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -30.72 389.23 -8.97 -39.69 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.40 Total: 10.56 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.91 Total: -18.49 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.41 Total: -29.85 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.92 Total: -22.15 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.72 -8.97 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305210329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.072 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds