Wall clock time and date at job start Wed Apr 1 2020 03:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 O 1.42891 * 109.47557 * 239.99662 * 2 1 3 5 5 C 1.53007 * 109.46766 * 119.99646 * 2 1 3 6 6 H 1.09000 * 109.99737 * 64.85383 * 5 2 1 7 7 C 1.54330 * 109.99053 * 303.81542 * 5 2 1 8 8 C 1.55159 * 103.02129 * 218.66469 * 7 5 2 9 9 C 1.54910 * 101.57928 * 35.30884 * 8 7 5 10 10 N 1.47026 * 109.88192 * 185.94936 * 5 2 1 11 11 C 1.34777 * 125.64629 * 298.39993 * 10 5 2 12 12 O 1.21718 * 120.00127 * 353.95056 * 11 10 5 13 13 C 1.46257 * 119.99541 * 174.23001 * 11 10 5 14 14 C 1.35025 * 119.99958 * 179.97438 * 13 11 10 15 15 C 1.46958 * 119.99922 * 179.97438 * 14 13 11 16 16 C 1.40014 * 120.10433 * 359.73268 * 15 14 13 17 17 C 1.37596 * 119.89956 * 179.75775 * 16 15 14 18 18 C 1.39174 * 120.10204 * 0.49228 * 17 16 15 19 19 O 1.35570 * 119.90251 * 179.74131 * 18 17 16 20 20 C 1.34784 * 117.00291 * 185.43097 * 19 18 17 21 21 H 1.08009 * 119.99862 * 5.57847 * 20 19 18 22 22 C 1.38715 * 120.00348 * 185.57769 * 20 19 18 23 23 N 1.31511 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46954 * 90.00399 * 24 22 20 26 26 H 1.48496 * 109.47010 * 209.99959 * 24 22 20 27 27 H 1.48499 * 109.47090 * 330.00058 * 24 22 20 28 28 C 1.39181 * 120.20024 * 359.75989 * 18 17 16 29 29 C 1.37595 * 120.10257 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47748 * 305.23467 * 1 2 3 31 31 H 1.09001 * 109.46861 * 65.23127 * 1 2 3 32 32 H 1.08999 * 109.47384 * 185.22861 * 1 2 3 33 33 H 1.09008 * 109.47269 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47090 * 299.99523 * 3 2 1 35 35 H 1.09006 * 109.47679 * 59.99623 * 3 2 1 36 36 H 0.96701 * 114.00613 * 162.62693 * 4 2 1 37 37 H 1.09007 * 110.84825 * 100.20161 * 7 5 2 38 38 H 1.08994 * 110.51915 * 336.97768 * 7 5 2 39 39 H 1.08994 * 111.00607 * 277.23328 * 8 7 5 40 40 H 1.09002 * 111.03473 * 153.39784 * 8 7 5 41 41 H 1.08994 * 110.36708 * 204.14925 * 9 8 7 42 42 H 1.09009 * 110.36406 * 81.83134 * 9 8 7 43 43 H 1.08000 * 120.00235 * 359.97438 * 13 11 10 44 44 H 1.08000 * 119.99807 * 0.02562 * 14 13 11 45 45 H 1.08000 * 120.05130 * 359.97021 * 16 15 14 46 46 H 1.08005 * 119.95252 * 180.22882 * 17 16 15 47 47 H 0.96990 * 119.99990 * 180.02562 * 23 22 20 48 48 H 1.07997 * 119.94738 * 179.97438 * 28 18 17 49 49 H 1.07993 * 120.05300 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1666 5 6 2.0399 -0.7212 1.2494 6 1 1.7538 -1.7725 1.2158 7 6 1.4547 -0.0608 2.5156 8 6 2.6434 -0.1011 3.5120 9 6 3.8495 0.1246 2.5664 10 7 3.5031 -0.6037 1.3324 11 6 4.3818 -1.0779 0.4271 12 8 3.9896 -1.7562 -0.5044 13 6 5.8073 -0.7827 0.5676 14 6 6.6878 -1.2582 -0.3390 15 6 8.1201 -0.9611 -0.1982 16 6 8.5735 -0.1804 0.8721 17 6 9.9161 0.0911 1.0026 18 6 10.8218 -0.4005 0.0672 19 8 12.1431 -0.1261 0.1969 20 6 12.9536 -0.5344 -0.7997 21 1 12.5328 -0.9738 -1.6922 22 6 14.3279 -0.3905 -0.6791 23 7 14.8402 0.1449 0.4074 24 14 15.4511 -0.9570 -2.0600 25 1 15.6674 0.1615 -3.0125 26 1 16.7557 -1.3837 -1.4933 27 1 14.8232 -2.0991 -2.7717 28 6 10.3751 -1.1725 -1.0012 29 6 9.0349 -1.4528 -1.1374 30 1 -0.3634 0.5929 0.8394 31 1 -0.3633 0.4306 -0.9331 32 1 -0.3634 -1.0234 0.0936 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 2.9324 -0.4901 -1.3763 37 1 0.6112 -0.6354 2.8983 38 1 1.1599 0.9678 2.3084 39 1 2.7085 -1.0717 4.0035 40 1 2.5664 0.7015 4.2455 41 1 4.7585 -0.2856 3.0065 42 1 3.9743 1.1872 2.3577 43 1 6.1558 -0.1843 1.3964 44 1 6.3393 -1.8563 -1.1680 45 1 7.8709 0.2052 1.5960 46 1 10.2672 0.6901 1.8299 47 1 15.8011 0.2460 0.4915 48 1 11.0815 -1.5515 -1.7250 49 1 8.6893 -2.0522 -1.9665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305210329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:00 Heat of formation + Delta-G solvation = -86.155665 kcal Electronic energy + Delta-G solvation = -29740.755509 eV Core-core repulsion = 25633.191466 eV Total energy + Delta-G solvation = -4107.564043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71633 -40.83833 -39.18124 -38.39792 -37.55654 -34.74381 -34.02751 -33.47542 -32.31816 -31.97209 -29.85844 -29.02913 -28.21347 -27.51109 -25.56950 -24.04343 -23.52615 -22.75829 -21.93225 -20.52498 -19.95764 -19.36183 -18.79562 -18.59118 -18.11319 -17.09741 -16.51120 -16.49481 -16.08394 -16.01627 -15.95381 -15.62293 -15.22062 -14.98492 -14.91328 -14.63137 -14.23477 -14.17618 -13.97094 -13.73358 -13.60385 -13.34183 -13.18750 -13.14908 -13.05451 -12.93542 -12.78175 -12.70391 -12.56366 -12.46005 -12.22725 -12.13839 -12.00496 -11.75763 -11.45533 -11.25868 -11.09865 -10.96636 -10.80399 -10.57409 -9.90300 -9.53055 -8.68498 -8.53269 -6.19010 -0.27457 0.57542 1.10552 1.35453 1.45230 1.52335 2.01766 2.14614 2.30071 2.85032 3.17512 3.28993 3.40240 3.53151 3.62390 3.82377 3.88626 3.95061 4.02219 4.07517 4.11102 4.18208 4.29506 4.32854 4.42514 4.47106 4.56999 4.64744 4.68550 4.77397 4.82810 4.86462 4.92353 4.93975 5.00963 5.01975 5.09370 5.12971 5.17697 5.18207 5.21958 5.29025 5.32633 5.39304 5.49282 5.61018 5.63871 5.79732 5.96307 6.09301 6.52439 6.81107 6.91336 7.22794 7.68247 8.68870 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.001870 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.458854 B =14967.191806 C =15594.422222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.106 3.894 3 C -0.173 4.173 4 O -0.578 6.578 5 C 0.112 3.888 6 H 0.052 0.948 7 C -0.121 4.121 8 C -0.126 4.126 9 C 0.087 3.913 10 N -0.610 5.610 11 C 0.556 3.444 12 O -0.573 6.573 13 C -0.245 4.245 14 C 0.019 3.981 15 C -0.171 4.171 16 C -0.036 4.036 17 C -0.206 4.206 18 C 0.130 3.870 19 O -0.218 6.218 20 C -0.416 4.416 21 H 0.105 0.895 22 C -0.019 4.019 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.373 0.627 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.147 0.853 44 H 0.125 0.875 45 H 0.158 0.842 46 H 0.124 0.876 47 H 0.275 0.725 48 H 0.124 0.876 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.433 2.780 5.763 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 C -0.230 4.230 4 O -0.390 6.390 5 C 0.009 3.991 6 H 0.070 0.930 7 C -0.159 4.159 8 C -0.164 4.164 9 C -0.035 4.035 10 N -0.342 5.342 11 C 0.350 3.650 12 O -0.457 6.457 13 C -0.265 4.265 14 C -0.001 4.001 15 C -0.172 4.172 16 C -0.054 4.054 17 C -0.225 4.225 18 C 0.078 3.922 19 O -0.123 6.123 20 C -0.491 4.491 21 H 0.122 0.878 22 C -0.217 4.217 23 N -0.549 5.549 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.268 4.268 29 C -0.058 4.058 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.226 0.774 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.164 0.836 44 H 0.143 0.857 45 H 0.176 0.824 46 H 0.142 0.858 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.839 2.360 5.516 28.478 hybrid contribution 1.722 -0.249 -0.700 1.875 sum -26.117 2.112 4.816 26.641 Atomic orbital electron populations 1.21813 0.91274 1.02769 1.03505 1.21792 0.95755 0.91375 0.84562 1.22488 1.01059 0.95718 1.03730 1.86508 1.33308 1.73115 1.46072 1.22358 0.80057 0.99556 0.97167 0.92964 1.22825 0.98643 1.02549 0.91889 1.22802 0.92510 1.03983 0.97066 1.22687 0.99951 0.97358 0.83479 1.48494 1.06213 1.56198 1.23269 1.18314 0.86886 0.78568 0.81224 1.90730 1.80471 1.40131 1.34334 1.22728 0.90982 1.08711 1.04120 1.22182 0.90257 0.91648 0.96008 1.18761 0.92761 1.06510 0.99148 1.21246 0.93518 0.94300 0.96330 1.20412 0.92834 1.07791 1.01491 1.20199 0.84871 0.92618 0.94501 1.83895 1.13960 1.69713 1.44775 1.21869 0.87942 1.42681 0.96649 0.87819 1.26604 0.97726 0.96365 1.01046 1.70141 1.13653 1.42342 1.28791 0.84591 0.76610 0.79136 0.75961 1.18761 1.19550 1.17659 1.21203 0.97355 1.06567 1.01692 1.21310 0.91274 0.95743 0.97460 0.88136 0.92291 0.92732 0.93398 0.92237 0.88781 0.77358 0.88475 0.88255 0.90849 0.86990 0.89737 0.89648 0.83572 0.85681 0.82444 0.85811 0.91570 0.85831 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.43 71.98 0.61 -1.29 16 2 C 0.11 1.97 0.94 -10.79 -0.01 1.96 16 3 C -0.17 -2.53 8.22 71.98 0.59 -1.94 16 4 O -0.58 -16.29 11.64 -126.39 -1.47 -17.76 16 5 C 0.11 1.91 2.53 45.35 0.11 2.03 16 6 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.12 -0.95 5.27 31.79 0.17 -0.78 16 8 C -0.13 -0.84 7.09 31.99 0.23 -0.61 16 9 C 0.09 0.95 6.41 86.86 0.56 1.51 16 10 N -0.61 -11.26 2.10 -793.16 -1.67 -12.92 16 11 C 0.56 13.97 6.88 86.33 0.59 14.57 16 12 O -0.57 -18.58 12.91 18.19 0.23 -18.34 16 13 C -0.24 -5.65 8.84 23.62 0.21 -5.44 16 14 C 0.02 0.50 9.45 23.82 0.23 0.73 16 15 C -0.17 -5.28 5.87 -20.13 -0.12 -5.40 16 16 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 17 C -0.21 -8.10 9.97 22.34 0.22 -7.88 16 18 C 0.13 6.16 6.66 22.72 0.15 6.31 16 19 O -0.22 -12.57 9.74 -20.29 -0.20 -12.77 16 20 C -0.42 -23.30 9.44 67.93 0.64 -22.66 16 21 H 0.10 5.33 5.27 -2.91 -0.02 5.31 16 22 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 23 N -0.91 -54.07 13.67 21.62 0.30 -53.77 16 24 Si 1.02 41.42 29.55 68.60 2.03 43.45 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 28 C -0.25 -10.43 9.11 22.34 0.20 -10.22 16 29 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 30 H 0.10 0.74 7.00 -2.39 -0.02 0.72 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.82 7.36 -2.38 -0.02 0.81 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.84 6.30 -2.38 -0.02 0.82 16 36 H 0.37 11.06 5.78 -74.06 -0.43 10.63 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.10 0.46 5.47 -2.39 -0.01 0.45 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.08 0.88 7.38 -2.39 -0.02 0.86 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.15 2.65 5.01 -2.91 -0.01 2.64 16 44 H 0.13 3.40 7.52 -2.91 -0.02 3.38 16 45 H 0.16 3.50 6.16 -2.91 -0.02 3.48 16 46 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 47 H 0.28 14.91 8.31 -92.72 -0.77 14.13 16 48 H 0.12 5.26 5.69 -2.91 -0.02 5.24 16 49 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -74.33 389.23 5.06 -69.27 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.55 Total: 34.56 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 5.28 Total: -31.71 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.37 Total: -66.69 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.43 Total: -48.88 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -74.33 5.06 -69.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305210329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.883 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds