Wall clock time and date at job start Wed Apr 1 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50697 * 119.99969 * 2 1 4 4 C 1.30996 * 120.00326 * 180.02562 * 2 1 3 5 5 C 1.50701 * 120.00141 * 5.43946 * 4 2 1 6 6 O 1.42900 * 109.47401 * 135.23751 * 5 4 2 7 7 C 1.35904 * 117.00074 * 180.02562 * 6 5 4 8 8 C 1.38753 * 120.05161 * 359.97438 * 7 6 5 9 9 C 1.38121 * 119.94160 * 180.02562 * 8 7 6 10 10 C 1.38294 * 120.05441 * 0.02562 * 9 8 7 11 11 C 1.38237 * 120.11308 * 359.95690 * 10 9 8 12 12 C 1.50703 * 119.97412 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46735 * 90.00021 * 12 11 10 14 14 O 1.21279 * 120.00548 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99590 * 179.97438 * 13 12 11 16 16 C 1.47075 * 136.05647 * 179.97438 * 15 13 12 17 17 C 1.53490 * 87.98145 * 152.85044 * 16 15 13 18 18 O 1.42905 * 114.20950 * 272.47916 * 17 16 15 19 19 C 1.50703 * 114.20384 * 139.65662 * 17 16 15 20 20 H 1.08001 * 120.00193 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99964 * 179.97438 * 19 17 16 22 22 N 1.31513 * 120.00215 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99940 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47501 * 90.00223 * 23 21 19 25 25 H 1.48503 * 109.47393 * 210.00240 * 23 21 19 26 26 H 1.48503 * 109.47463 * 330.00162 * 23 21 19 27 27 C 1.47060 * 136.05879 * 359.95756 * 15 13 12 28 28 C 1.38165 * 120.05302 * 0.27602 * 11 10 9 29 29 H 1.09004 * 109.46607 * 234.83534 * 1 2 3 30 30 H 1.08996 * 109.47125 * 354.83838 * 1 2 3 31 31 H 1.08996 * 109.46889 * 114.84530 * 1 2 3 32 32 H 1.09002 * 109.47495 * 270.00640 * 3 2 1 33 33 H 1.09001 * 109.46947 * 30.00441 * 3 2 1 34 34 H 1.09000 * 109.47679 * 150.00118 * 3 2 1 35 35 H 1.07999 * 120.00482 * 185.44316 * 4 2 1 36 36 H 1.08999 * 109.47098 * 15.23725 * 5 4 2 37 37 H 1.09006 * 109.47116 * 255.24043 * 5 4 2 38 38 H 1.08001 * 120.03692 * 0.04979 * 8 7 6 39 39 H 1.08002 * 119.97884 * 180.02562 * 9 8 7 40 40 H 1.08004 * 119.93989 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.46886 * 330.00387 * 12 11 10 42 42 H 1.08995 * 109.47013 * 210.00225 * 12 11 10 43 43 H 1.08997 * 113.46735 * 267.63543 * 16 15 13 44 44 H 1.09001 * 113.46304 * 38.06846 * 16 15 13 45 45 H 0.96690 * 114.00104 * 180.02562 * 18 17 16 46 46 H 0.96994 * 120.00339 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.47149 * 321.92956 * 27 15 13 48 48 H 1.08999 * 113.47323 * 92.37229 * 27 15 13 49 49 H 1.08007 * 120.02559 * 179.74179 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4137 -2.4366 -0.1248 6 8 2.0817 -3.2822 -1.0634 7 6 1.5319 -4.5035 -1.2937 8 6 0.3734 -4.8805 -0.6295 9 6 -0.1831 -6.1225 -0.8649 10 6 0.4136 -6.9902 -1.7614 11 6 1.5675 -6.6168 -2.4247 12 6 2.2155 -7.5650 -3.4005 13 6 1.6494 -7.3328 -4.7776 14 8 0.8035 -6.4809 -4.9499 15 7 2.0839 -8.0712 -5.8181 16 6 1.7923 -8.1473 -7.2576 17 6 3.2185 -8.6761 -7.4633 18 8 4.2027 -7.6548 -7.6380 19 6 3.3250 -9.7893 -8.4735 20 1 2.4401 -10.1453 -8.9802 21 6 4.5523 -10.3528 -8.7516 22 7 5.6299 -9.9191 -8.1350 23 14 4.6844 -11.7322 -10.0042 24 1 4.9217 -11.1559 -11.3521 25 1 5.8150 -12.6240 -9.6412 26 1 3.4216 -12.5135 -10.0153 27 6 3.0584 -9.1550 -6.0136 28 6 2.1308 -5.3774 -2.1890 29 1 -0.3633 -0.5919 0.8402 30 1 -0.3633 1.0235 0.0925 31 1 -0.3633 -0.4318 -0.9325 32 1 2.4421 1.6199 -1.0277 33 1 1.6714 2.0647 0.5139 34 1 3.2129 1.1748 0.5138 35 1 3.2384 -1.1366 0.0882 36 1 0.3987 -2.2408 -0.4704 37 1 1.3780 -2.9293 0.8469 38 1 -0.0930 -4.2033 0.0707 39 1 -1.0850 -6.4164 -0.3486 40 1 -0.0230 -7.9611 -1.9438 41 1 2.0175 -8.5923 -3.0947 42 1 3.2914 -7.3914 -3.4158 43 1 1.0195 -8.8746 -7.5061 44 1 1.6196 -7.1742 -7.7175 45 1 5.0999 -7.9912 -7.7676 46 1 6.4933 -10.3157 -8.3304 47 1 3.9624 -9.0392 -5.4157 48 1 2.6227 -10.1507 -5.9311 49 1 3.0347 -5.0877 -2.7044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416209490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:35 Heat of formation + Delta-G solvation = -49.699503 kcal Electronic energy + Delta-G solvation = -28994.816509 eV Core-core repulsion = 24888.833324 eV Total energy + Delta-G solvation = -4105.983185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30229 -39.53814 -38.17650 -37.16823 -36.40834 -33.99141 -32.50417 -32.19737 -30.83982 -29.24333 -29.02012 -28.13143 -27.17953 -25.20456 -25.05800 -24.47767 -22.53448 -21.34236 -20.06925 -18.53457 -18.26928 -17.63672 -17.39042 -16.41090 -16.23605 -16.07599 -15.97973 -15.39601 -14.94811 -14.89973 -14.54436 -14.36394 -14.31302 -14.20448 -13.89863 -13.28133 -13.11278 -13.05056 -12.86400 -12.62918 -12.54356 -12.29762 -12.25279 -12.05669 -11.98792 -11.64145 -11.56115 -11.43937 -11.32919 -11.08534 -11.07756 -10.96912 -10.75811 -10.48691 -10.26459 -9.64847 -9.21785 -9.17651 -8.81239 -8.71155 -8.38296 -8.13982 -7.82611 -6.41169 -4.51460 1.34682 1.51892 1.61527 3.14144 3.21110 3.22134 3.23842 3.26383 3.52781 3.92575 4.17652 4.39982 4.51235 4.74407 4.77836 4.81819 4.86559 4.92099 4.98368 5.08132 5.13703 5.16894 5.25056 5.28377 5.36181 5.37952 5.44038 5.52895 5.55735 5.59781 5.64448 5.69705 5.82004 5.94250 6.07016 6.19984 6.21867 6.31737 6.41489 6.42235 6.45440 6.50948 6.62760 6.67855 6.69689 6.80911 7.10946 7.41606 7.62145 7.80017 8.50831 8.55433 8.79619 9.19993 9.49081 10.65495 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.001856 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.516665 B =15079.536964 C =15863.490357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.169 4.169 5 C 0.090 3.910 6 O -0.311 6.311 7 C 0.129 3.871 8 C -0.214 4.214 9 C -0.081 4.081 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.098 4.098 13 C 0.538 3.462 14 O -0.556 6.556 15 N -0.637 5.637 16 C 0.107 3.893 17 C 0.239 3.761 18 O -0.571 6.571 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.071 3.929 28 C -0.135 4.135 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.394 0.606 46 H 0.274 0.726 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 11.363 18.248 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.114 4.114 3 C -0.174 4.174 4 C -0.187 4.187 5 C 0.016 3.984 6 O -0.225 6.225 7 C 0.084 3.916 8 C -0.233 4.233 9 C -0.099 4.099 10 C -0.161 4.161 11 C -0.016 4.016 12 C -0.138 4.138 13 C 0.327 3.673 14 O -0.435 6.435 15 N -0.371 5.371 16 C -0.015 4.015 17 C 0.197 3.803 18 O -0.384 6.384 19 C -0.571 4.571 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.052 4.052 28 C -0.154 4.154 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.250 0.750 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.389 12.391 18.344 23.337 hybrid contribution 0.504 -1.216 -0.443 1.389 sum -6.885 11.175 17.901 22.197 Atomic orbital electron populations 1.20952 0.92231 1.02825 1.02366 1.21646 0.95957 0.95004 0.98746 1.20875 0.99694 0.94315 1.02528 1.22321 1.00391 0.91881 1.04074 1.21701 0.95664 0.88926 0.92140 1.86082 1.51833 1.24477 1.60145 1.18862 0.92543 0.84778 0.95375 1.21131 0.98146 0.99098 1.04911 1.20824 0.98853 0.93030 0.97186 1.20888 0.96133 1.00573 0.98493 1.19120 0.94508 0.93478 0.94516 1.20612 1.01821 0.99971 0.91413 1.19785 0.81676 0.81256 0.84565 1.90666 1.33488 1.34548 1.84799 1.49733 1.42076 1.36414 1.08830 1.23309 0.99216 1.00706 0.78268 1.19547 0.84988 0.85915 0.89832 1.86051 1.22548 1.35200 1.94629 1.21438 0.94638 1.17289 1.23757 0.90934 1.25081 0.95335 0.97039 0.95625 1.69258 0.99406 1.43071 1.42150 0.86311 0.78011 0.81018 0.81058 1.20243 1.20911 1.19542 1.24220 0.90158 0.89579 1.01265 1.20250 1.02357 0.92923 0.99868 0.91399 0.91601 0.91002 0.90879 0.91767 0.91627 0.86232 0.91310 0.91465 0.85916 0.85926 0.86050 0.88079 0.87922 0.89777 0.91633 0.74989 0.91567 0.91709 0.90057 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.60 36.01 0.31 -0.53 16 2 C -0.11 -0.89 6.05 -101.07 -0.61 -1.50 16 3 C -0.12 -0.73 9.98 36.00 0.36 -0.38 16 4 C -0.17 -1.55 9.48 -36.02 -0.34 -1.89 16 5 C 0.09 0.91 4.79 36.01 0.17 1.08 16 6 O -0.31 -4.29 10.12 -19.44 -0.20 -4.49 16 7 C 0.13 1.87 6.69 -39.22 -0.26 1.61 16 8 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 9 C -0.08 -0.99 10.04 -39.60 -0.40 -1.39 16 10 C -0.14 -1.98 9.70 -39.56 -0.38 -2.37 16 11 C -0.02 -0.24 4.37 -104.65 -0.46 -0.70 16 12 C -0.10 -1.55 5.66 -29.04 -0.16 -1.71 16 13 C 0.54 10.98 8.07 -10.99 -0.09 10.89 16 14 O -0.56 -13.10 16.81 5.56 0.09 -13.00 16 15 N -0.64 -13.48 3.69 -185.21 -0.68 -14.16 16 16 C 0.11 2.36 8.03 -8.51 -0.07 2.29 16 17 C 0.24 5.71 1.58 -91.25 -0.14 5.56 16 18 O -0.57 -14.78 13.54 -35.23 -0.48 -15.25 16 19 C -0.53 -13.20 8.69 -34.44 -0.30 -13.50 16 20 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 21 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 22 N -0.90 -22.48 11.01 55.43 0.61 -21.87 16 23 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 C 0.07 1.49 7.84 -8.50 -0.07 1.42 16 28 C -0.14 -2.14 9.64 -39.44 -0.38 -2.52 16 29 H 0.07 0.39 7.98 -51.93 -0.41 -0.02 16 30 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 31 H 0.07 0.52 7.53 -51.93 -0.39 0.13 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.32 8.01 -51.93 -0.42 -0.09 16 34 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 35 H 0.12 1.08 8.02 -52.49 -0.42 0.66 16 36 H 0.07 0.64 5.63 -51.93 -0.29 0.35 16 37 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 38 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.10 1.35 8.08 -51.93 -0.42 0.93 16 42 H 0.10 1.52 8.08 -51.93 -0.42 1.10 16 43 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.39 10.23 6.33 45.56 0.29 10.52 16 46 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 47 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 49 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -30.08 410.17 -9.74 -39.82 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.97 Total: 13.58 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.28 Total: -4.97 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.07 Total: -36.03 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.58 Total: -32.75 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.08 -9.74 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416209490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.880 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds