Wall clock time and date at job start Wed Apr 1 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50697 * 119.99969 * 2 1 4 4 C 1.30996 * 120.00326 * 180.02562 * 2 1 3 5 5 C 1.50701 * 120.00141 * 5.43946 * 4 2 1 6 6 O 1.42900 * 109.47401 * 135.23751 * 5 4 2 7 7 C 1.35904 * 117.00074 * 180.02562 * 6 5 4 8 8 C 1.38753 * 120.05161 * 359.97438 * 7 6 5 9 9 C 1.38121 * 119.94160 * 180.02562 * 8 7 6 10 10 C 1.38294 * 120.05441 * 0.02562 * 9 8 7 11 11 C 1.38237 * 120.11308 * 359.95690 * 10 9 8 12 12 C 1.50703 * 119.97412 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46735 * 90.00021 * 12 11 10 14 14 O 1.21279 * 120.00548 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99590 * 179.97438 * 13 12 11 16 16 C 1.47075 * 136.05647 * 179.97438 * 15 13 12 17 17 C 1.53490 * 87.98145 * 152.85044 * 16 15 13 18 18 O 1.42905 * 114.20950 * 272.47916 * 17 16 15 19 19 C 1.50703 * 114.20384 * 139.65662 * 17 16 15 20 20 H 1.08001 * 120.00193 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99964 * 179.97438 * 19 17 16 22 22 N 1.31513 * 120.00215 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99940 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47501 * 90.00223 * 23 21 19 25 25 H 1.48503 * 109.47393 * 210.00240 * 23 21 19 26 26 H 1.48503 * 109.47463 * 330.00162 * 23 21 19 27 27 C 1.47060 * 136.05879 * 359.95756 * 15 13 12 28 28 C 1.38165 * 120.05302 * 0.27602 * 11 10 9 29 29 H 1.09004 * 109.46607 * 234.83534 * 1 2 3 30 30 H 1.08996 * 109.47125 * 354.83838 * 1 2 3 31 31 H 1.08996 * 109.46889 * 114.84530 * 1 2 3 32 32 H 1.09002 * 109.47495 * 270.00640 * 3 2 1 33 33 H 1.09001 * 109.46947 * 30.00441 * 3 2 1 34 34 H 1.09000 * 109.47679 * 150.00118 * 3 2 1 35 35 H 1.07999 * 120.00482 * 185.44316 * 4 2 1 36 36 H 1.08999 * 109.47098 * 15.23725 * 5 4 2 37 37 H 1.09006 * 109.47116 * 255.24043 * 5 4 2 38 38 H 1.08001 * 120.03692 * 0.04979 * 8 7 6 39 39 H 1.08002 * 119.97884 * 180.02562 * 9 8 7 40 40 H 1.08004 * 119.93989 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.46886 * 330.00387 * 12 11 10 42 42 H 1.08995 * 109.47013 * 210.00225 * 12 11 10 43 43 H 1.08997 * 113.46735 * 267.63543 * 16 15 13 44 44 H 1.09001 * 113.46304 * 38.06846 * 16 15 13 45 45 H 0.96690 * 114.00104 * 180.02562 * 18 17 16 46 46 H 0.96994 * 120.00339 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.47149 * 321.92956 * 27 15 13 48 48 H 1.08999 * 113.47323 * 92.37229 * 27 15 13 49 49 H 1.08007 * 120.02559 * 179.74179 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4137 -2.4366 -0.1248 6 8 2.0817 -3.2822 -1.0634 7 6 1.5319 -4.5035 -1.2937 8 6 0.3734 -4.8805 -0.6295 9 6 -0.1831 -6.1225 -0.8649 10 6 0.4136 -6.9902 -1.7614 11 6 1.5675 -6.6168 -2.4247 12 6 2.2155 -7.5650 -3.4005 13 6 1.6494 -7.3328 -4.7776 14 8 0.8035 -6.4809 -4.9499 15 7 2.0839 -8.0712 -5.8181 16 6 1.7923 -8.1473 -7.2576 17 6 3.2185 -8.6761 -7.4633 18 8 4.2027 -7.6548 -7.6380 19 6 3.3250 -9.7893 -8.4735 20 1 2.4401 -10.1453 -8.9802 21 6 4.5523 -10.3528 -8.7516 22 7 5.6299 -9.9191 -8.1350 23 14 4.6844 -11.7322 -10.0042 24 1 4.9217 -11.1559 -11.3521 25 1 5.8150 -12.6240 -9.6412 26 1 3.4216 -12.5135 -10.0153 27 6 3.0584 -9.1550 -6.0136 28 6 2.1308 -5.3774 -2.1890 29 1 -0.3633 -0.5919 0.8402 30 1 -0.3633 1.0235 0.0925 31 1 -0.3633 -0.4318 -0.9325 32 1 2.4421 1.6199 -1.0277 33 1 1.6714 2.0647 0.5139 34 1 3.2129 1.1748 0.5138 35 1 3.2384 -1.1366 0.0882 36 1 0.3987 -2.2408 -0.4704 37 1 1.3780 -2.9293 0.8469 38 1 -0.0930 -4.2033 0.0707 39 1 -1.0850 -6.4164 -0.3486 40 1 -0.0230 -7.9611 -1.9438 41 1 2.0175 -8.5923 -3.0947 42 1 3.2914 -7.3914 -3.4158 43 1 1.0195 -8.8746 -7.5061 44 1 1.6196 -7.1742 -7.7175 45 1 5.0999 -7.9912 -7.7676 46 1 6.4933 -10.3157 -8.3304 47 1 3.9624 -9.0392 -5.4157 48 1 2.6227 -10.1507 -5.9311 49 1 3.0347 -5.0877 -2.7044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416209490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:34 Heat of formation + Delta-G solvation = -67.025215 kcal Electronic energy + Delta-G solvation = -28995.567808 eV Core-core repulsion = 24888.833324 eV Total energy + Delta-G solvation = -4106.734484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50074 -41.02150 -39.47366 -38.48554 -37.18610 -35.87955 -34.12175 -33.68594 -31.75627 -30.75768 -29.88994 -28.67544 -28.58929 -26.90961 -26.69893 -25.31413 -23.57070 -22.57022 -21.63515 -19.98107 -19.30331 -19.17067 -18.58247 -17.92136 -17.30665 -17.19552 -17.04343 -16.95904 -16.53760 -16.34982 -15.96868 -15.41819 -15.22210 -15.03747 -14.92937 -14.75661 -14.52236 -14.24786 -14.10875 -13.79770 -13.73287 -13.42810 -13.40159 -13.24701 -12.92619 -12.80329 -12.78438 -12.75891 -12.60605 -12.48381 -12.21167 -12.16234 -12.10927 -11.98387 -11.62188 -11.40613 -10.95938 -10.64566 -10.24268 -9.85990 -9.78520 -9.57671 -9.16810 -8.26730 -6.43739 0.27737 0.47323 0.94303 1.47933 1.51387 1.60225 1.63615 1.97691 2.37384 2.41675 2.77977 2.95692 3.57462 3.62196 3.75197 3.85455 3.87210 3.94736 4.05924 4.12905 4.17280 4.20653 4.25805 4.33539 4.36304 4.45820 4.49654 4.57510 4.62485 4.64053 4.71696 4.75414 4.80935 4.86067 4.91541 4.93277 4.94304 5.04330 5.05708 5.10854 5.25171 5.29083 5.43042 5.59451 5.61121 5.73640 5.76181 5.85476 5.91636 6.44918 6.62215 6.88978 7.14907 7.30320 7.49557 8.79506 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.001856 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.516665 B =15079.536964 C =15863.490357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.121 4.121 4 C -0.194 4.194 5 C 0.087 3.913 6 O -0.333 6.333 7 C 0.117 3.883 8 C -0.210 4.210 9 C -0.077 4.077 10 C -0.153 4.153 11 C -0.034 4.034 12 C -0.088 4.088 13 C 0.533 3.467 14 O -0.591 6.591 15 N -0.640 5.640 16 C 0.106 3.894 17 C 0.216 3.784 18 O -0.588 6.588 19 C -0.551 4.551 20 H 0.075 0.925 21 C 0.032 3.968 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.280 1.280 26 H -0.264 1.264 27 C 0.087 3.913 28 C -0.164 4.164 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.389 0.611 46 H 0.277 0.723 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 10.811 19.813 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.177 4.177 4 C -0.212 4.212 5 C 0.013 3.987 6 O -0.248 6.248 7 C 0.072 3.928 8 C -0.228 4.228 9 C -0.094 4.094 10 C -0.171 4.171 11 C -0.035 4.035 12 C -0.127 4.127 13 C 0.325 3.675 14 O -0.473 6.473 15 N -0.373 5.373 16 C -0.017 4.017 17 C 0.174 3.826 18 O -0.401 6.401 19 C -0.589 4.589 20 H 0.093 0.907 21 C -0.169 4.169 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.206 1.206 25 H -0.206 1.206 26 H -0.188 1.188 27 C -0.036 4.036 28 C -0.183 4.183 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.066 0.934 45 H 0.245 0.755 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.117 0.883 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.842 11.839 19.926 24.807 hybrid contribution 0.927 -0.906 -0.911 1.584 sum -7.915 10.934 19.015 23.319 Atomic orbital electron populations 1.21025 0.91195 1.03993 1.02464 1.21962 0.96894 0.95151 0.96504 1.20944 1.00022 0.93939 1.02797 1.22323 1.00300 0.92148 1.06474 1.21920 0.95882 0.88814 0.92084 1.86059 1.52862 1.24602 1.61244 1.19021 0.93289 0.84959 0.95514 1.21492 0.97117 0.99701 1.04537 1.21263 0.99514 0.92374 0.96278 1.21185 0.95594 1.01715 0.98634 1.19184 0.95618 0.93428 0.95235 1.20605 1.01810 1.01808 0.88525 1.20616 0.81021 0.80114 0.85799 1.90637 1.35238 1.35878 1.85558 1.49806 1.42151 1.36682 1.08650 1.23326 0.98886 1.00251 0.79198 1.19858 0.85214 0.85874 0.91608 1.86037 1.22734 1.36435 1.94914 1.21656 0.95089 1.17692 1.24461 0.90683 1.25774 0.94990 0.99001 0.97096 1.69320 0.99750 1.43832 1.42948 0.85349 0.78130 0.78425 0.78487 1.20613 1.20580 1.18845 1.24020 0.90257 0.90117 0.99163 1.20332 1.02719 0.94006 1.01245 0.90266 0.90171 0.91639 0.90866 0.90159 0.91336 0.86851 0.90479 0.90006 0.82985 0.82391 0.84481 0.85236 0.87381 0.87780 0.93355 0.75471 0.91341 0.91622 0.88335 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.60 71.24 0.61 -0.87 16 2 C -0.10 -1.53 6.05 -16.48 -0.10 -1.63 16 3 C -0.12 -1.36 9.98 71.23 0.71 -0.64 16 4 C -0.19 -3.51 9.48 25.65 0.24 -3.27 16 5 C 0.09 1.68 4.79 71.24 0.34 2.02 16 6 O -0.33 -9.31 10.12 -92.47 -0.94 -10.24 16 7 C 0.12 3.39 6.69 22.50 0.15 3.54 16 8 C -0.21 -4.81 9.04 22.37 0.20 -4.61 16 9 C -0.08 -1.67 10.04 22.26 0.22 -1.45 16 10 C -0.15 -3.99 9.70 22.28 0.22 -3.78 16 11 C -0.03 -1.05 4.37 -19.88 -0.09 -1.14 16 12 C -0.09 -2.73 5.66 29.10 0.16 -2.57 16 13 C 0.53 21.79 8.07 87.66 0.71 22.49 16 14 O -0.59 -28.27 16.81 -3.03 -0.05 -28.32 16 15 N -0.64 -26.99 3.69 -858.76 -3.17 -30.16 16 16 C 0.11 4.70 8.03 83.18 0.67 5.37 16 17 C 0.22 10.36 1.58 -11.20 -0.02 10.34 16 18 O -0.59 -31.15 13.54 -148.98 -2.02 -33.17 16 19 C -0.55 -27.12 8.69 25.60 0.22 -26.89 16 20 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16 21 C 0.03 1.54 5.40 84.66 0.46 2.00 16 22 N -0.92 -45.85 11.01 21.45 0.24 -45.62 16 23 Si 0.97 38.77 29.54 68.60 2.03 40.79 16 24 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 27 C 0.09 3.61 7.84 83.19 0.65 4.26 16 28 C -0.16 -5.33 9.64 22.36 0.22 -5.12 16 29 H 0.08 0.73 7.98 -2.38 -0.02 0.71 16 30 H 0.08 0.68 7.91 -2.39 -0.02 0.66 16 31 H 0.06 0.85 7.53 -2.39 -0.02 0.84 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.65 8.01 -2.39 -0.02 0.63 16 34 H 0.07 0.73 8.04 -2.39 -0.02 0.71 16 35 H 0.11 2.11 8.02 -2.91 -0.02 2.09 16 36 H 0.08 1.32 5.63 -2.39 -0.01 1.31 16 37 H 0.08 1.29 7.66 -2.38 -0.02 1.27 16 38 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 39 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.13 3.21 8.08 -2.39 -0.02 3.19 16 42 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 43 H 0.10 4.13 8.10 -2.39 -0.02 4.11 16 44 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 45 H 0.39 20.77 6.33 -74.06 -0.47 20.30 16 46 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 47 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.10 3.74 8.10 -2.39 -0.02 3.72 16 49 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -65.26 410.17 2.16 -63.10 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: 0.49 Total: 45.56 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.58 Total: -1.94 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -2.93 Total: -75.78 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -3.00 Total: -71.73 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Total: -65.26 2.16 -63.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416209490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.925 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds