Wall clock time and date at job start Wed Apr 1 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09004 * 109.99813 * 306.34460 * 3 2 1 5 5 C 1.54322 * 109.98708 * 185.32061 * 3 2 1 6 6 H 1.08999 * 111.07667 * 144.56111 * 5 3 2 7 7 C 1.53001 * 110.58594 * 21.30407 * 5 3 2 8 8 O 1.42903 * 109.46899 * 180.19566 * 7 5 3 9 9 C 1.55160 * 102.86024 * 263.04808 * 5 3 2 10 10 C 1.54903 * 101.58254 * 324.30047 * 9 5 3 11 11 N 1.47026 * 109.88538 * 67.44384 * 3 2 1 12 12 C 1.34775 * 125.64667 * 300.51636 * 11 3 2 13 13 O 1.21720 * 120.00033 * 359.75770 * 12 11 3 14 14 C 1.46247 * 119.99834 * 179.75721 * 12 11 3 15 15 C 1.35024 * 119.99843 * 171.43138 * 14 12 11 16 16 C 1.46960 * 120.00325 * 354.07679 * 15 14 12 17 17 C 1.40017 * 120.10350 * 276.46200 * 16 15 14 18 18 C 1.37593 * 119.89784 * 179.73894 * 17 16 15 19 19 C 1.39179 * 120.10240 * 0.50836 * 18 17 16 20 20 O 1.35568 * 119.90159 * 179.74483 * 19 18 17 21 21 C 1.34778 * 117.00418 * 174.65774 * 20 19 18 22 22 H 1.08005 * 119.99625 * 5.10697 * 21 20 19 23 23 C 1.38717 * 120.00418 * 185.10338 * 21 20 19 24 24 N 1.31506 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99982 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47271 * 59.99824 * 25 23 21 27 27 H 1.48502 * 109.46707 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46873 * 299.99632 * 25 23 21 29 29 C 1.39174 * 120.20042 * 359.75862 * 19 18 17 30 30 C 1.37596 * 120.10440 * 359.97438 * 29 19 18 31 31 H 1.09002 * 109.46939 * 148.59203 * 1 2 3 32 32 H 1.08999 * 109.47043 * 268.59279 * 1 2 3 33 33 H 1.09005 * 109.46961 * 28.59054 * 1 2 3 34 34 H 1.09001 * 109.47228 * 240.00152 * 2 1 3 35 35 H 1.09003 * 109.47355 * 119.99978 * 2 1 3 36 36 H 1.08995 * 109.47635 * 300.19442 * 7 5 3 37 37 H 1.08996 * 109.46978 * 60.19984 * 7 5 3 38 38 H 0.96701 * 114.00452 * 180.02562 * 8 7 5 39 39 H 1.09004 * 110.99958 * 206.22619 * 9 5 3 40 40 H 1.08995 * 111.03789 * 82.39217 * 9 5 3 41 41 H 1.09001 * 110.36634 * 278.17310 * 10 9 5 42 42 H 1.08997 * 110.45992 * 155.89991 * 10 9 5 43 43 H 1.08005 * 120.00257 * 351.71213 * 14 12 11 44 44 H 1.08008 * 120.00128 * 174.08120 * 15 14 12 45 45 H 1.08003 * 120.05069 * 359.97438 * 17 16 15 46 46 H 1.07999 * 119.95285 * 180.27077 * 18 17 16 47 47 H 0.96997 * 120.00436 * 180.02562 * 24 23 21 48 48 H 1.07998 * 119.94683 * 179.97438 * 29 19 18 49 49 H 1.08000 * 120.05634 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5919 1.9963 -0.8251 5 6 3.5772 1.4585 -0.1345 6 1 3.9098 2.3090 -0.7296 7 6 4.0778 0.1464 -0.7418 8 8 5.5021 0.1850 -0.8512 9 6 4.0511 1.5986 1.3363 10 6 2.9568 2.5209 1.9291 11 7 1.7067 2.0908 1.2768 12 6 0.4643 2.2586 1.7717 13 8 -0.4997 1.8606 1.1442 14 6 0.2746 2.9191 3.0627 15 6 -0.9683 3.2429 3.4792 16 6 -2.1169 3.0515 2.5826 17 6 -2.4348 4.0276 1.6304 18 6 -3.5079 3.8416 0.7895 19 6 -4.2832 2.6903 0.8913 20 8 -5.3427 2.5136 0.0642 21 6 -5.9856 1.3313 0.1372 22 1 -5.7031 0.6085 0.8885 23 6 -7.0101 1.0427 -0.7524 24 7 -7.3544 1.9228 -1.6667 25 14 -7.9016 -0.5958 -0.6506 26 1 -8.5370 -0.7315 0.6846 27 1 -8.9464 -0.6570 -1.7041 28 1 -6.9303 -1.7011 -0.8512 29 6 -3.9743 1.7199 1.8400 30 6 -2.8998 1.8948 2.6815 31 1 -0.3633 -0.8771 -0.5356 32 1 -0.3633 -0.0252 1.0273 33 1 -0.3633 0.9024 -0.4918 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.7851 -0.6855 -0.1013 37 1 3.6409 0.0142 -1.7316 38 1 5.8895 -0.6161 -1.2297 39 1 5.0314 2.0727 1.3874 40 1 4.0607 0.6312 1.8382 41 1 3.1695 3.5632 1.6915 42 1 2.8877 2.3851 3.0084 43 1 1.1290 3.1519 3.6810 44 1 -1.1185 3.6427 4.4712 45 1 -1.8364 4.9234 1.5536 46 1 -3.7513 4.5919 0.0518 47 1 -8.0710 1.7212 -2.2885 48 1 -4.5790 0.8282 1.9157 49 1 -2.6611 1.1414 3.4176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492994464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:44 Heat of formation + Delta-G solvation = -42.617422 kcal Electronic energy + Delta-G solvation = -30745.139799 eV Core-core repulsion = 26639.463717 eV Total energy + Delta-G solvation = -4105.676083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59983 -38.93570 -38.13594 -36.70475 -36.13507 -33.84065 -32.74441 -32.00374 -31.90301 -30.04996 -28.76813 -28.12684 -25.91106 -25.20479 -23.60193 -23.18371 -22.11792 -21.71067 -20.75583 -19.21528 -18.52502 -17.86735 -17.74396 -17.39132 -16.71801 -16.17121 -15.61733 -15.20829 -14.72876 -14.46563 -14.41884 -14.25997 -13.77685 -13.58898 -13.50433 -13.40566 -13.36970 -13.24141 -13.13752 -12.66159 -12.56120 -12.31134 -12.24313 -11.94138 -11.62477 -11.42924 -11.26144 -11.14299 -10.89941 -10.81110 -10.66817 -10.59231 -10.55529 -10.51813 -10.37612 -10.19474 -9.37318 -9.13981 -8.99318 -8.67015 -8.38739 -8.00878 -6.88403 -6.36422 -3.93625 1.52568 2.42728 2.45113 3.02307 3.17881 3.19573 3.21830 3.58170 3.76011 4.04131 4.28082 4.32637 4.63708 4.69546 4.83346 4.95782 4.96543 5.08637 5.12466 5.15048 5.19828 5.21788 5.33336 5.36560 5.42721 5.46566 5.55149 5.59793 5.69749 5.79436 5.86960 5.89036 5.90463 6.03869 6.17647 6.27207 6.38463 6.40449 6.49965 6.51994 6.63833 6.83518 6.99713 7.08318 7.17532 7.24848 7.36492 7.48288 7.57154 7.67664 7.97618 8.09696 8.56789 9.09720 9.83077 10.82075 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002768 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.051070 B =10112.001431 C =11425.053577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.148 3.852 4 H 0.077 0.923 5 C -0.098 4.098 6 H 0.090 0.910 7 C 0.085 3.915 8 O -0.575 6.575 9 C -0.120 4.120 10 C 0.100 3.900 11 N -0.618 5.618 12 C 0.543 3.457 13 O -0.481 6.481 14 C -0.228 4.228 15 C 0.011 3.989 16 C -0.155 4.155 17 C -0.053 4.053 18 C -0.189 4.189 19 C 0.159 3.841 20 O -0.180 6.180 21 C -0.388 4.388 22 H 0.090 0.910 23 C 0.039 3.961 24 N -0.865 5.865 25 Si 0.939 3.061 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.228 4.228 30 C -0.040 4.040 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.380 0.620 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.269 0.731 48 H 0.123 0.877 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.311 -1.889 7.112 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.044 3.956 4 H 0.095 0.905 5 C -0.117 4.117 6 H 0.108 0.892 7 C 0.007 3.993 8 O -0.381 6.381 9 C -0.158 4.158 10 C -0.023 4.023 11 N -0.355 5.355 12 C 0.335 3.665 13 O -0.356 6.356 14 C -0.249 4.249 15 C -0.008 4.008 16 C -0.156 4.156 17 C -0.072 4.072 18 C -0.208 4.208 19 C 0.105 3.895 20 O -0.084 6.084 21 C -0.465 4.465 22 H 0.108 0.892 23 C -0.165 4.165 24 N -0.501 5.501 25 Si 0.763 3.237 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.247 4.247 30 C -0.059 4.059 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.079 0.921 48 H 0.141 0.859 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 23.284 -1.334 6.693 24.264 hybrid contribution -0.121 -1.426 -0.110 1.435 sum 23.163 -2.761 6.582 24.238 Atomic orbital electron populations 1.22181 0.92835 1.01371 1.03149 1.22069 0.98589 0.95199 1.01232 1.21551 0.92668 0.94123 0.87238 0.90497 1.22201 0.94021 0.98244 0.97224 0.89163 1.22297 0.80687 0.96960 0.99371 1.86441 1.20587 1.44235 1.86805 1.22751 0.98254 1.00267 0.94521 1.22293 0.83899 0.98287 0.97808 1.48451 1.05634 1.60257 1.21198 1.18078 0.81605 0.80442 0.86388 1.91105 1.38746 1.46472 1.59234 1.22922 0.97793 1.06698 0.97454 1.22380 0.91888 0.89646 0.96885 1.18217 0.98475 0.97672 1.01256 1.20401 0.95825 0.96988 0.93952 1.19981 0.98451 0.98546 1.03861 1.19449 0.87218 0.93202 0.89589 1.83909 1.35746 1.36131 1.52565 1.21269 1.15370 0.92387 1.17469 0.89223 1.25259 0.96936 0.99299 0.95010 1.70008 1.28473 1.34430 1.17157 0.85820 0.78955 0.80557 0.78324 1.19567 1.20343 1.19551 1.20953 1.01653 1.01750 1.00386 1.20496 0.93517 0.94709 0.97129 0.95261 0.91619 0.90231 0.91615 0.92335 0.92806 0.93147 0.77338 0.89784 0.90732 0.91605 0.90683 0.86269 0.85967 0.87801 0.86900 0.92099 0.85895 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.04 37.16 0.30 -1.88 16 2 C -0.13 -1.54 4.35 -26.73 -0.12 -1.65 16 3 C 0.15 1.65 2.97 -66.95 -0.20 1.45 16 4 H 0.08 0.98 7.99 -51.93 -0.41 0.56 16 5 C -0.10 -0.84 3.17 -88.78 -0.28 -1.12 16 6 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 7 C 0.08 0.63 5.12 37.16 0.19 0.82 16 8 O -0.58 -4.29 13.51 -35.23 -0.48 -4.77 16 9 C -0.12 -0.91 6.38 -24.58 -0.16 -1.06 16 10 C 0.10 0.84 6.58 -2.53 -0.02 0.82 16 11 N -0.62 -7.28 3.08 -164.70 -0.51 -7.78 16 12 C 0.54 7.95 7.24 -13.04 -0.09 7.86 16 13 O -0.48 -8.82 8.01 5.17 0.04 -8.78 16 14 C -0.23 -2.83 9.52 -37.51 -0.36 -3.18 16 15 C 0.01 0.16 9.66 -37.19 -0.36 -0.20 16 16 C -0.16 -2.78 3.28 -105.03 -0.34 -3.13 16 17 C -0.05 -1.02 9.41 -39.15 -0.37 -1.39 16 18 C -0.19 -4.28 9.97 -39.47 -0.39 -4.67 16 19 C 0.16 4.06 6.66 -38.88 -0.26 3.80 16 20 O -0.18 -5.36 9.74 0.76 0.01 -5.35 16 21 C -0.39 -11.28 9.48 30.91 0.29 -10.99 16 22 H 0.09 2.43 5.18 -52.48 -0.27 2.15 16 23 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 24 N -0.87 -26.14 13.67 55.48 0.76 -25.38 16 25 Si 0.94 21.23 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 C -0.23 -5.27 9.14 -39.47 -0.36 -5.63 16 30 C -0.04 -0.79 9.07 -39.14 -0.35 -1.14 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.16 6.35 -51.93 -0.33 0.83 16 33 H 0.08 1.46 6.07 -51.93 -0.32 1.15 16 34 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 35 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 36 H 0.05 0.39 6.71 -51.93 -0.35 0.04 16 37 H 0.05 0.36 7.57 -51.93 -0.39 -0.03 16 38 H 0.38 1.22 9.12 45.56 0.42 1.64 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.57 8.02 -51.93 -0.42 0.16 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.53 7.04 -51.93 -0.37 0.17 16 43 H 0.12 1.09 6.80 -52.48 -0.36 0.73 16 44 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 46 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.12 2.86 5.61 -52.49 -0.29 2.56 16 49 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -34.60 388.14 -8.67 -43.27 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.34 Total: 7.05 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.98 Total: -20.31 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.25 Total: -33.17 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.43 Total: -18.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.60 -8.67 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492994464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.654 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds