Wall clock time and date at job start Wed Apr 1 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09004 * 109.99813 * 306.34460 * 3 2 1 5 5 C 1.54322 * 109.98708 * 185.32061 * 3 2 1 6 6 H 1.08999 * 111.07667 * 144.56111 * 5 3 2 7 7 C 1.53001 * 110.58594 * 21.30407 * 5 3 2 8 8 O 1.42903 * 109.46899 * 180.19566 * 7 5 3 9 9 C 1.55160 * 102.86024 * 263.04808 * 5 3 2 10 10 C 1.54903 * 101.58254 * 324.30047 * 9 5 3 11 11 N 1.47026 * 109.88538 * 67.44384 * 3 2 1 12 12 C 1.34775 * 125.64667 * 300.51636 * 11 3 2 13 13 O 1.21720 * 120.00033 * 359.75770 * 12 11 3 14 14 C 1.46247 * 119.99834 * 179.75721 * 12 11 3 15 15 C 1.35024 * 119.99843 * 171.43138 * 14 12 11 16 16 C 1.46960 * 120.00325 * 354.07679 * 15 14 12 17 17 C 1.40017 * 120.10350 * 276.46200 * 16 15 14 18 18 C 1.37593 * 119.89784 * 179.73894 * 17 16 15 19 19 C 1.39179 * 120.10240 * 0.50836 * 18 17 16 20 20 O 1.35568 * 119.90159 * 179.74483 * 19 18 17 21 21 C 1.34778 * 117.00418 * 174.65774 * 20 19 18 22 22 H 1.08005 * 119.99625 * 5.10697 * 21 20 19 23 23 C 1.38717 * 120.00418 * 185.10338 * 21 20 19 24 24 N 1.31506 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99982 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47271 * 59.99824 * 25 23 21 27 27 H 1.48502 * 109.46707 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46873 * 299.99632 * 25 23 21 29 29 C 1.39174 * 120.20042 * 359.75862 * 19 18 17 30 30 C 1.37596 * 120.10440 * 359.97438 * 29 19 18 31 31 H 1.09002 * 109.46939 * 148.59203 * 1 2 3 32 32 H 1.08999 * 109.47043 * 268.59279 * 1 2 3 33 33 H 1.09005 * 109.46961 * 28.59054 * 1 2 3 34 34 H 1.09001 * 109.47228 * 240.00152 * 2 1 3 35 35 H 1.09003 * 109.47355 * 119.99978 * 2 1 3 36 36 H 1.08995 * 109.47635 * 300.19442 * 7 5 3 37 37 H 1.08996 * 109.46978 * 60.19984 * 7 5 3 38 38 H 0.96701 * 114.00452 * 180.02562 * 8 7 5 39 39 H 1.09004 * 110.99958 * 206.22619 * 9 5 3 40 40 H 1.08995 * 111.03789 * 82.39217 * 9 5 3 41 41 H 1.09001 * 110.36634 * 278.17310 * 10 9 5 42 42 H 1.08997 * 110.45992 * 155.89991 * 10 9 5 43 43 H 1.08005 * 120.00257 * 351.71213 * 14 12 11 44 44 H 1.08008 * 120.00128 * 174.08120 * 15 14 12 45 45 H 1.08003 * 120.05069 * 359.97438 * 17 16 15 46 46 H 1.07999 * 119.95285 * 180.27077 * 18 17 16 47 47 H 0.96997 * 120.00436 * 180.02562 * 24 23 21 48 48 H 1.07998 * 119.94683 * 179.97438 * 29 19 18 49 49 H 1.08000 * 120.05634 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5919 1.9963 -0.8251 5 6 3.5772 1.4585 -0.1345 6 1 3.9098 2.3090 -0.7296 7 6 4.0778 0.1464 -0.7418 8 8 5.5021 0.1850 -0.8512 9 6 4.0511 1.5986 1.3363 10 6 2.9568 2.5209 1.9291 11 7 1.7067 2.0908 1.2768 12 6 0.4643 2.2586 1.7717 13 8 -0.4997 1.8606 1.1442 14 6 0.2746 2.9191 3.0627 15 6 -0.9683 3.2429 3.4792 16 6 -2.1169 3.0515 2.5826 17 6 -2.4348 4.0276 1.6304 18 6 -3.5079 3.8416 0.7895 19 6 -4.2832 2.6903 0.8913 20 8 -5.3427 2.5136 0.0642 21 6 -5.9856 1.3313 0.1372 22 1 -5.7031 0.6085 0.8885 23 6 -7.0101 1.0427 -0.7524 24 7 -7.3544 1.9228 -1.6667 25 14 -7.9016 -0.5958 -0.6506 26 1 -8.5370 -0.7315 0.6846 27 1 -8.9464 -0.6570 -1.7041 28 1 -6.9303 -1.7011 -0.8512 29 6 -3.9743 1.7199 1.8400 30 6 -2.8998 1.8948 2.6815 31 1 -0.3633 -0.8771 -0.5356 32 1 -0.3633 -0.0252 1.0273 33 1 -0.3633 0.9024 -0.4918 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.7851 -0.6855 -0.1013 37 1 3.6409 0.0142 -1.7316 38 1 5.8895 -0.6161 -1.2297 39 1 5.0314 2.0727 1.3874 40 1 4.0607 0.6312 1.8382 41 1 3.1695 3.5632 1.6915 42 1 2.8877 2.3851 3.0084 43 1 1.1290 3.1519 3.6810 44 1 -1.1185 3.6427 4.4712 45 1 -1.8364 4.9234 1.5536 46 1 -3.7513 4.5919 0.0518 47 1 -8.0710 1.7212 -2.2885 48 1 -4.5790 0.8282 1.9157 49 1 -2.6611 1.1414 3.4176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492994464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:43 Heat of formation + Delta-G solvation = -66.548319 kcal Electronic energy + Delta-G solvation = -30746.177521 eV Core-core repulsion = 26639.463717 eV Total energy + Delta-G solvation = -4106.713804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55299 -40.65912 -39.26586 -38.07586 -37.11296 -34.95238 -34.36627 -33.61279 -32.78595 -31.77783 -29.76637 -29.50112 -27.44577 -26.64654 -24.45954 -24.30889 -23.48218 -23.22473 -22.02382 -20.16364 -19.81904 -19.50819 -18.84615 -18.32740 -18.26547 -17.07097 -16.78360 -16.36040 -16.19882 -15.98678 -15.66863 -15.52288 -15.20331 -15.07306 -14.86113 -14.47814 -14.35195 -14.27185 -14.23917 -14.11322 -13.98797 -13.58976 -13.56249 -13.12917 -12.91754 -12.81125 -12.53079 -12.44139 -12.29072 -12.18214 -12.13737 -11.83835 -11.71104 -11.62637 -11.40015 -11.22051 -10.80956 -10.78638 -10.33807 -10.15181 -9.72613 -9.38961 -8.65190 -8.47041 -6.13908 0.44133 0.70825 0.75377 1.31321 1.43133 1.48238 2.12829 2.17176 2.50381 2.84322 3.15521 3.18993 3.57227 3.61436 3.62544 3.86377 3.99396 4.06765 4.13853 4.16230 4.20460 4.24788 4.32231 4.37951 4.49461 4.53286 4.56495 4.59034 4.72790 4.75889 4.77694 4.81922 4.94794 5.00581 5.09020 5.09971 5.12009 5.13051 5.22710 5.28006 5.29987 5.34966 5.41755 5.60877 5.66040 5.72269 5.74037 5.78141 6.04146 6.27997 6.71952 6.91581 6.97522 7.48600 7.81609 8.76625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.002768 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.051070 B =10112.001431 C =11425.053577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.145 3.855 4 H 0.052 0.948 5 C -0.093 4.093 6 H 0.088 0.912 7 C 0.087 3.913 8 O -0.588 6.588 9 C -0.112 4.112 10 C 0.095 3.905 11 N -0.616 5.616 12 C 0.526 3.474 13 O -0.532 6.532 14 C -0.203 4.203 15 C -0.009 4.009 16 C -0.116 4.116 17 C -0.054 4.054 18 C -0.202 4.202 19 C 0.113 3.887 20 O -0.235 6.235 21 C -0.413 4.413 22 H 0.097 0.903 23 C -0.024 4.024 24 N -0.923 5.923 25 Si 1.018 2.982 26 H -0.255 1.255 27 H -0.268 1.268 28 H -0.261 1.261 29 C -0.236 4.236 30 C -0.046 4.046 31 H 0.022 0.978 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.398 0.602 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.272 0.728 48 H 0.111 0.889 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.534 -2.550 10.117 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.041 3.959 4 H 0.070 0.930 5 C -0.112 4.112 6 H 0.107 0.893 7 C 0.009 3.991 8 O -0.396 6.396 9 C -0.149 4.149 10 C -0.027 4.027 11 N -0.351 5.351 12 C 0.319 3.681 13 O -0.411 6.411 14 C -0.223 4.223 15 C -0.028 4.028 16 C -0.117 4.117 17 C -0.072 4.072 18 C -0.221 4.221 19 C 0.063 3.937 20 O -0.142 6.142 21 C -0.489 4.489 22 H 0.114 0.886 23 C -0.221 4.221 24 N -0.561 5.561 25 Si 0.836 3.164 26 H -0.179 1.179 27 H -0.193 1.193 28 H -0.185 1.185 29 C -0.255 4.255 30 C -0.064 4.064 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.248 0.752 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.184 0.816 44 H 0.186 0.814 45 H 0.155 0.845 46 H 0.123 0.877 47 H 0.081 0.919 48 H 0.129 0.871 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 27.610 -1.982 9.740 29.345 hybrid contribution -1.017 -1.110 -0.928 1.769 sum 26.593 -3.093 8.811 28.185 Atomic orbital electron populations 1.21998 0.96059 0.99262 1.01122 1.21985 0.95242 0.96095 1.02635 1.21532 0.94613 0.93252 0.86546 0.93019 1.22125 0.91621 0.98973 0.98450 0.89341 1.22216 0.81023 0.96359 0.99490 1.86384 1.20263 1.45844 1.87113 1.22737 0.98576 1.00450 0.93176 1.22583 0.82148 0.99035 0.98902 1.48525 1.06147 1.59139 1.21272 1.18696 0.81896 0.80332 0.87208 1.91125 1.40501 1.48756 1.60693 1.23216 0.98798 1.04078 0.96192 1.22538 0.90144 0.92099 0.97991 1.18741 0.98123 0.95320 0.99523 1.20789 0.94650 0.98600 0.93196 1.20222 0.99428 0.97727 1.04764 1.19949 0.87854 0.95230 0.90671 1.83866 1.38181 1.36999 1.55190 1.21751 1.16054 0.92849 1.18233 0.88585 1.26593 0.97523 1.03742 0.94218 1.70161 1.29939 1.37219 1.18811 0.84676 0.77639 0.74897 0.79145 1.17930 1.19274 1.18508 1.21026 1.02826 1.00884 1.00796 1.20837 0.92516 0.96169 0.96874 0.95886 0.93695 0.93637 0.89735 0.91264 0.92186 0.93091 0.75209 0.88342 0.90393 0.90422 0.88393 0.81564 0.81438 0.84543 0.87669 0.91853 0.87078 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.04 71.98 0.58 -3.57 16 2 C -0.12 -2.69 4.35 30.59 0.13 -2.56 16 3 C 0.14 3.03 2.97 45.34 0.13 3.17 16 4 H 0.05 1.34 7.99 -2.38 -0.02 1.32 16 5 C -0.09 -1.35 3.17 -9.60 -0.03 -1.38 16 6 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 7 C 0.09 1.07 5.12 71.98 0.37 1.44 16 8 O -0.59 -6.98 13.51 -148.98 -2.01 -8.99 16 9 C -0.11 -1.22 6.38 31.99 0.20 -1.02 16 10 C 0.10 1.14 6.58 86.85 0.57 1.71 16 11 N -0.62 -12.82 3.08 -793.21 -2.44 -15.26 16 12 C 0.53 14.14 7.24 86.32 0.62 14.76 16 13 O -0.53 -19.49 8.01 -4.41 -0.04 -19.53 16 14 C -0.20 -4.00 9.52 23.61 0.22 -3.78 16 15 C -0.01 -0.19 9.66 23.82 0.23 0.04 16 16 C -0.12 -3.95 3.28 -20.13 -0.07 -4.02 16 17 C -0.05 -2.06 9.41 22.55 0.21 -1.85 16 18 C -0.20 -9.66 9.97 22.34 0.22 -9.43 16 19 C 0.11 6.20 6.66 22.72 0.15 6.35 16 20 O -0.24 -15.28 9.74 -20.21 -0.20 -15.48 16 21 C -0.41 -25.74 9.48 67.93 0.64 -25.10 16 22 H 0.10 5.58 5.18 -2.91 -0.02 5.56 16 23 C -0.02 -1.43 5.49 84.86 0.47 -0.96 16 24 N -0.92 -59.44 13.67 21.62 0.30 -59.14 16 25 Si 1.02 45.34 29.55 68.60 2.03 47.37 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 29 C -0.24 -11.47 9.14 22.34 0.20 -11.27 16 30 C -0.05 -1.79 9.07 22.55 0.20 -1.58 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 1.63 6.35 -2.39 -0.02 1.61 16 33 H 0.04 1.78 6.07 -2.38 -0.01 1.77 16 34 H 0.08 1.54 6.29 -2.39 -0.02 1.53 16 35 H 0.07 1.40 7.85 -2.39 -0.02 1.39 16 36 H 0.06 0.67 6.71 -2.39 -0.02 0.65 16 37 H 0.05 0.62 7.57 -2.39 -0.02 0.60 16 38 H 0.40 1.40 9.12 -74.06 -0.68 0.73 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.85 8.02 -2.39 -0.02 0.83 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.78 7.04 -2.39 -0.02 0.76 16 43 H 0.17 1.80 6.80 -2.91 -0.02 1.78 16 44 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 46 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 47 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 48 H 0.11 5.52 5.61 -2.91 -0.02 5.50 16 49 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -85.17 388.14 3.01 -82.15 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.30 Total: 27.92 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 5.08 Total: -39.05 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.15 Total: -74.41 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.24 Total: -44.00 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.17 3.01 -82.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492994464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.606 kcal (2) G-P(sol) polarization free energy of solvation -85.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds