Wall clock time and date at job start Wed Apr 1 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47394 * 239.99711 * 2 1 3 5 5 O 1.45199 * 109.46977 * 119.99648 * 2 1 3 6 6 C 1.34644 * 117.00135 * 60.00222 * 5 2 1 7 7 O 1.21516 * 119.99604 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00016 * 179.72609 * 6 5 2 9 9 C 1.47067 * 136.05728 * 359.62528 * 8 6 5 10 10 C 1.53237 * 88.08165 * 207.20771 * 9 8 6 11 11 C 1.53003 * 114.50785 * 220.45905 * 10 9 8 12 12 H 1.08992 * 109.47546 * 153.84713 * 11 10 9 13 13 F 1.39903 * 109.46898 * 33.84517 * 11 10 9 14 14 C 1.50702 * 109.46833 * 273.84808 * 11 10 9 15 15 O 1.20817 * 120.00376 * 45.00051 * 14 11 10 16 16 O 1.34238 * 119.99462 * 224.99221 * 14 11 10 17 17 C 1.45203 * 116.99622 * 179.97438 * 16 14 11 18 18 C 1.52999 * 109.46971 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47018 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47094 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99940 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00118 * 180.02562 * 20 19 18 23 23 N 1.31506 * 119.99935 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99628 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47402 * 90.00478 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99908 * 24 22 20 27 27 H 1.48499 * 109.47365 * 330.00066 * 24 22 20 28 28 C 1.47065 * 136.05555 * 180.02562 * 8 6 5 29 29 H 1.08994 * 109.46868 * 300.00107 * 1 2 3 30 30 H 1.09004 * 109.46642 * 60.00445 * 1 2 3 31 31 H 1.08996 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46600 * 299.99846 * 3 2 1 34 34 H 1.09002 * 109.47255 * 59.99951 * 3 2 1 35 35 H 1.09007 * 109.47187 * 300.00347 * 4 2 1 36 36 H 1.08999 * 109.47137 * 59.99569 * 4 2 1 37 37 H 1.08991 * 109.47351 * 180.02562 * 4 2 1 38 38 H 1.08994 * 113.46972 * 321.93725 * 9 8 6 39 39 H 1.08998 * 113.46779 * 92.38418 * 9 8 6 40 40 H 1.08996 * 114.01898 * 87.71945 * 10 9 8 41 41 H 1.09000 * 109.47224 * 300.01013 * 17 16 14 42 42 H 1.09003 * 109.46848 * 60.00540 * 17 16 14 43 43 H 1.08996 * 109.47567 * 300.00912 * 18 17 16 44 44 H 1.09008 * 109.46589 * 60.00336 * 18 17 16 45 45 H 1.08996 * 109.47720 * 300.00848 * 19 18 17 46 46 H 1.09003 * 109.46800 * 60.00384 * 19 18 17 47 47 H 0.97006 * 120.00198 * 179.97438 * 23 22 20 48 48 H 1.09006 * 113.46302 * 267.61497 * 28 8 6 49 49 H 1.08999 * 113.47115 * 37.99952 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5041 8 7 2.0722 -2.6671 2.4143 9 6 2.9077 -2.3914 3.5927 10 6 3.2550 -3.8835 3.6315 11 6 3.2995 -4.4885 5.0361 12 1 3.0876 -5.5561 4.9788 13 9 2.3411 -3.8654 5.8427 14 6 4.6687 -4.2793 5.6299 15 8 5.2101 -3.2033 5.5358 16 8 5.2867 -5.2885 6.2637 17 6 6.6038 -5.0153 6.8104 18 6 7.1453 -6.2749 7.4895 19 6 8.5334 -5.9873 8.0650 20 6 9.0671 -7.2281 8.7334 21 1 8.4755 -8.1316 8.7459 22 6 10.3105 -7.2099 9.3288 23 7 10.7764 -8.2929 9.9115 24 14 11.3339 -5.6474 9.3064 25 1 11.0210 -4.8334 10.5084 26 1 12.7764 -6.0004 9.3095 27 1 11.0181 -4.8662 8.0836 28 6 1.9023 -4.0365 2.9227 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 3.7648 -1.7533 3.3776 39 1 2.3385 -2.0556 4.4595 40 1 4.1140 -4.1551 3.0180 41 1 7.2768 -4.7186 6.0060 42 1 6.5338 -4.2096 7.5413 43 1 6.4724 -6.5720 8.2938 44 1 7.2153 -7.0803 6.7582 45 1 9.2061 -5.6904 7.2604 46 1 8.4638 -5.1817 8.7961 47 1 11.6514 -8.2802 10.3301 48 1 1.0623 -4.1435 3.6091 49 1 1.9052 -4.7941 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497114006.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:35 Heat of formation + Delta-G solvation = -202.423142 kcal Electronic energy + Delta-G solvation = -30024.146069 eV Core-core repulsion = 25480.771066 eV Total energy + Delta-G solvation = -4543.375003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.20077 -42.02876 -41.51491 -40.38977 -37.97688 -37.65963 -35.94069 -35.11651 -33.89940 -32.63453 -29.82924 -28.57505 -28.39539 -28.33517 -27.23963 -25.13279 -23.76144 -22.33250 -22.04703 -21.36095 -20.33336 -19.28523 -19.00185 -18.96931 -18.21863 -18.02723 -17.78003 -17.44753 -17.02593 -16.68386 -16.29342 -16.16507 -15.60242 -15.37282 -15.20292 -15.08986 -14.80133 -14.67104 -14.30998 -14.01271 -13.93821 -13.73107 -13.71434 -13.40011 -13.37797 -13.09633 -12.94469 -12.90864 -12.86133 -12.61417 -12.56086 -12.46938 -12.22195 -12.17177 -12.04426 -11.86954 -11.75687 -11.44481 -11.40307 -11.35362 -11.28375 -11.16329 -10.76727 -9.98174 -8.29305 -6.34274 0.77552 0.90608 1.33451 1.37774 1.39341 1.50515 1.65528 2.36257 2.58657 2.92711 3.06176 3.15972 3.41163 3.53388 3.70070 3.73870 3.76435 3.90983 4.00243 4.01595 4.02192 4.13704 4.34476 4.39794 4.41465 4.47689 4.56225 4.58879 4.61515 4.71839 4.73243 4.75940 4.78407 4.84222 4.84492 4.97284 4.98191 5.09254 5.24513 5.25773 5.28594 5.41797 5.49137 5.50824 5.63321 6.26526 6.46375 6.47923 6.74093 7.13855 7.30407 8.87119 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.001649 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.059165 B =16978.172143 C =17667.721777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.370 6.370 6 C 0.676 3.324 7 O -0.589 6.589 8 N -0.643 5.643 9 C 0.112 3.888 10 C -0.137 4.137 11 C 0.134 3.866 12 H 0.168 0.832 13 F -0.183 7.183 14 C 0.438 3.562 15 O -0.511 6.511 16 O -0.349 6.349 17 C 0.073 3.927 18 C -0.094 4.094 19 C -0.011 4.011 20 C -0.535 4.535 21 H 0.036 0.964 22 C 0.005 3.995 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.244 1.244 28 C 0.143 3.857 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.024 0.976 47 H 0.267 0.733 48 H 0.114 0.886 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.459 17.583 -21.128 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.433 3.567 7 O -0.480 6.480 8 N -0.385 5.385 9 C -0.011 4.011 10 C -0.157 4.157 11 C 0.096 3.904 12 H 0.185 0.815 13 F -0.163 7.163 14 C 0.279 3.721 15 O -0.398 6.398 16 O -0.265 6.265 17 C 0.000 4.000 18 C -0.132 4.132 19 C -0.048 4.048 20 C -0.573 4.573 21 H 0.055 0.945 22 C -0.192 4.192 23 N -0.590 5.590 24 Si 0.772 3.228 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.167 1.167 28 C 0.022 3.978 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.131 0.869 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.450 17.895 -21.537 35.890 hybrid contribution 0.834 0.316 0.563 1.055 sum -21.616 18.211 -20.975 35.197 Atomic orbital electron populations 1.22463 0.93701 1.03673 1.03679 1.22482 0.94812 0.92675 0.81432 1.21892 1.02321 0.90742 1.04378 1.22468 1.01526 1.02227 0.97361 1.86341 1.71731 1.22887 1.47536 1.17417 0.77821 0.80491 0.80970 1.90896 1.42367 1.71042 1.43733 1.48161 1.53715 1.15837 1.20801 1.23046 0.94140 0.96738 0.87139 1.23432 1.01340 0.96775 0.94136 1.21043 0.79520 1.02598 0.87243 0.81466 1.92913 1.63229 1.85103 1.75079 1.24526 0.89404 0.82286 0.75905 1.90698 1.66846 1.27154 1.55138 1.86504 1.33458 1.41238 1.65287 1.23266 0.79472 0.99234 0.97998 1.21335 0.96514 0.95722 0.99617 1.19458 0.93459 0.95793 0.96088 1.21430 1.02411 0.97970 1.35447 0.94547 1.25996 0.99076 0.99833 0.94272 1.70058 1.19709 1.30630 1.38591 0.85684 0.77426 0.79537 0.80171 1.19210 1.21072 1.16748 1.23144 0.96049 0.81584 0.96985 0.92086 0.88824 0.91922 0.91487 0.87668 0.91357 0.91882 0.88844 0.92197 0.89879 0.88083 0.84213 0.90486 0.90975 0.91811 0.91487 0.95506 0.95807 0.92456 0.86856 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.37 71.98 0.60 -2.10 16 2 C 0.12 1.96 1.13 -10.79 -0.01 1.95 16 3 C -0.14 -1.41 8.85 71.98 0.64 -0.78 16 4 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 5 O -0.37 -7.92 9.91 -55.54 -0.55 -8.47 16 6 C 0.68 15.53 8.26 129.79 1.07 16.61 16 7 O -0.59 -15.69 12.66 19.79 0.25 -15.44 16 8 N -0.64 -11.65 3.69 -989.39 -3.65 -15.30 16 9 C 0.11 1.75 7.82 83.09 0.65 2.40 16 10 C -0.14 -1.57 3.65 -10.55 -0.04 -1.61 16 11 C 0.13 1.68 3.89 29.85 0.12 1.80 16 12 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 13 F -0.18 -2.82 15.49 44.97 0.70 -2.13 16 14 C 0.44 9.44 7.30 71.24 0.52 9.96 16 15 O -0.51 -13.77 16.18 21.99 0.36 -13.42 16 16 O -0.35 -8.79 10.22 -51.49 -0.53 -9.32 16 17 C 0.07 2.16 5.47 71.98 0.39 2.55 16 18 C -0.09 -3.39 5.53 30.59 0.17 -3.22 16 19 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 20 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 21 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 22 C 0.01 0.30 5.47 84.66 0.46 0.76 16 23 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 24 Si 0.95 43.08 27.47 68.60 1.88 44.97 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 28 C 0.14 1.58 8.13 83.18 0.68 2.26 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.29 5.88 -2.39 -0.01 1.27 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.31 5.88 -2.38 -0.01 1.30 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.55 7.10 -2.39 -0.02 1.53 16 40 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 42 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 45 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 46 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 47 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 48 H 0.11 0.94 7.91 -2.38 -0.02 0.92 16 49 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -74.39 406.22 5.86 -68.53 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.88 Total: 10.60 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.22 Total: -1.65 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -3.35 Total: -73.67 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.47 Total: -46.65 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.70 Total: -2.13 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.97 kcal Total: -74.39 5.86 -68.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497114006.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.889 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds