Wall clock time and date at job start Wed Apr 1 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 C 1.52993 * 109.47261 * 239.99772 * 2 1 3 5 5 N 1.46506 * 109.47019 * 119.99318 * 2 1 3 6 6 C 1.46762 * 124.34527 * 60.00243 * 5 2 1 7 7 C 1.54480 * 105.47407 * 197.03563 * 6 5 2 8 8 H 1.09003 * 110.96537 * 92.70566 * 7 6 5 9 9 C 1.50696 * 110.97338 * 216.46944 * 7 6 5 10 10 O 1.20827 * 119.99896 * 359.97438 * 9 7 6 11 11 O 1.34228 * 120.00353 * 180.02562 * 9 7 6 12 12 C 1.45198 * 117.00289 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47177 * 179.97438 * 12 11 9 14 14 C 1.38641 * 119.74700 * 269.73005 * 13 12 11 15 15 C 1.37621 * 120.24380 * 179.76419 * 14 13 12 16 16 C 1.40712 * 119.74735 * 0.48476 * 15 14 13 17 17 C 1.41394 * 120.25074 * 179.78804 * 16 15 14 18 18 H 1.07995 * 120.00509 * 204.37197 * 17 16 15 19 19 C 1.39953 * 119.99185 * 24.36989 * 17 16 15 20 20 N 1.30815 * 120.00497 * 17.88289 * 19 17 16 21 21 Si 1.86807 * 119.99491 * 197.87719 * 19 17 16 22 22 H 1.48494 * 109.47417 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46733 * 120.00621 * 21 19 17 24 24 H 1.48500 * 109.47018 * 240.00092 * 21 19 17 25 25 C 1.40720 * 119.51165 * 359.77204 * 16 15 14 26 26 C 1.37619 * 119.74342 * 359.97438 * 25 16 15 27 27 C 1.54623 * 101.76306 * 334.59008 * 7 6 5 28 28 C 1.34415 * 124.35035 * 240.03090 * 5 2 1 29 29 O 1.21280 * 124.94460 * 359.54872 * 28 5 2 30 30 H 1.08995 * 109.47429 * 300.00356 * 1 2 3 31 31 H 1.09007 * 109.46963 * 60.00742 * 1 2 3 32 32 H 1.09003 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46800 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46835 * 300.00057 * 3 2 1 35 35 H 1.09002 * 109.47118 * 59.99266 * 3 2 1 36 36 H 1.08999 * 109.47243 * 299.99306 * 4 2 1 37 37 H 1.08998 * 109.47353 * 60.00046 * 4 2 1 38 38 H 1.09008 * 109.47017 * 180.02562 * 4 2 1 39 39 H 1.08997 * 110.24827 * 316.03950 * 6 5 2 40 40 H 1.09005 * 110.24428 * 78.04020 * 6 5 2 41 41 H 1.08995 * 109.47367 * 300.00247 * 12 11 9 42 42 H 1.09006 * 109.46604 * 60.00204 * 12 11 9 43 43 H 1.07995 * 119.87898 * 359.97438 * 14 13 12 44 44 H 1.08000 * 120.13037 * 180.28024 * 15 14 13 45 45 H 0.96993 * 120.00344 * 179.97438 * 20 19 17 46 46 H 1.08003 * 120.13259 * 179.97438 * 25 16 15 47 47 H 1.08000 * 119.87345 * 180.02562 * 26 25 16 48 48 H 1.09003 * 110.48503 * 266.11554 * 27 7 6 49 49 H 1.09004 * 110.49109 * 143.47516 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.7231 -2.0906 1.5227 7 6 2.0544 -2.2425 3.0239 8 1 1.1702 -2.0706 3.6378 9 6 2.6523 -3.5958 3.3101 10 8 2.8104 -4.3886 2.4120 11 8 3.0083 -3.9211 4.5628 12 6 3.5771 -5.2416 4.7646 13 6 3.9138 -5.4262 6.2219 14 6 5.1705 -5.0716 6.6879 15 6 5.4872 -5.2312 8.0176 16 6 4.5334 -5.7661 8.9031 17 6 4.8490 -5.9389 10.2705 18 1 4.3201 -6.6746 10.8581 19 6 5.8470 -5.1563 10.8625 20 7 6.2414 -4.0515 10.2837 21 14 6.6157 -5.6896 12.4794 22 1 5.9998 -6.9658 12.9233 23 1 8.0761 -5.8838 12.2928 24 1 6.3829 -4.6433 13.5071 25 6 3.2629 -6.1275 8.4179 26 6 2.9663 -5.9541 7.0853 27 6 3.0986 -1.1211 3.2313 28 6 2.7938 -0.1230 2.1362 29 8 3.1915 1.0224 2.1098 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6768 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2489 39 1 0.6693 -2.3052 1.3454 40 1 2.3495 -2.7564 0.9290 41 1 2.8551 -5.9989 4.4594 42 1 4.4834 -5.3420 4.1672 43 1 5.9024 -4.6654 6.0055 44 1 6.4652 -4.9502 8.3794 45 1 6.9327 -3.5090 10.6942 46 1 2.5234 -6.5393 9.0887 47 1 1.9918 -6.2304 6.7107 48 1 4.1087 -1.5149 3.1183 49 1 2.9750 -0.6612 4.2118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:07 Heat of formation + Delta-G solvation = -106.791898 kcal Electronic energy + Delta-G solvation = -29588.473748 eV Core-core repulsion = 25480.014851 eV Total energy + Delta-G solvation = -4108.458897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31409 -40.00096 -37.77408 -36.98973 -36.42416 -35.68911 -33.91292 -31.24834 -30.59828 -29.40954 -28.24316 -27.69883 -27.55979 -27.15631 -24.54765 -23.29359 -21.72987 -21.13475 -20.38167 -20.10048 -18.92681 -17.86997 -17.42837 -16.88140 -16.71544 -16.09043 -15.79120 -15.35944 -15.28352 -14.45109 -14.37800 -14.19332 -14.05596 -13.96945 -13.85592 -13.62388 -13.27710 -12.88399 -12.59900 -12.51500 -12.44237 -12.39428 -12.30196 -12.07281 -11.97723 -11.81389 -11.74755 -11.64669 -11.34883 -11.31828 -11.21846 -11.02461 -10.89661 -10.51550 -10.40830 -10.24119 -9.75041 -9.60817 -9.51411 -9.26057 -8.94750 -7.60660 -7.49611 -6.90207 -4.50090 2.20289 2.29410 2.39361 2.62383 2.90382 2.97100 3.01253 3.06177 3.26273 3.83181 3.96996 4.08381 4.44487 4.46060 4.54695 4.61276 4.68618 4.70627 5.05436 5.09926 5.19416 5.25354 5.32172 5.38125 5.42076 5.49771 5.55475 5.57995 5.59277 5.61402 5.61639 5.64129 5.71451 5.94803 6.00663 6.05492 6.19971 6.26910 6.38707 6.71353 6.83497 6.87624 6.94093 7.14148 7.22496 7.47661 7.69216 7.88557 7.92348 7.96479 7.97419 8.15467 8.50377 8.74969 8.82860 10.03413 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.001954 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.080894 B =14327.680765 C =15150.804858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.611 5.611 6 C 0.114 3.886 7 C -0.099 4.099 8 H 0.128 0.872 9 C 0.469 3.531 10 O -0.515 6.515 11 O -0.343 6.343 12 C 0.136 3.864 13 C -0.239 4.239 14 C -0.075 4.075 15 C -0.171 4.171 16 C 0.118 3.882 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.231 4.231 26 C -0.063 4.063 27 C -0.143 4.143 28 C 0.523 3.477 29 O -0.523 6.523 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.283 0.717 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.110 0.890 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 6.310 -17.133 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.216 4.216 5 N -0.346 5.346 6 C -0.009 4.009 7 C -0.119 4.119 8 H 0.145 0.855 9 C 0.311 3.689 10 O -0.404 6.404 11 O -0.259 6.259 12 C 0.065 3.935 13 C -0.240 4.240 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.483 4.483 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.407 5.407 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.250 4.250 26 C -0.081 4.081 27 C -0.183 4.183 28 C 0.311 3.689 29 O -0.400 6.400 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.128 0.872 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.079 6.895 -17.412 20.396 hybrid contribution 0.320 -0.393 0.745 0.901 sum -7.758 6.502 -16.666 19.500 Atomic orbital electron populations 1.22199 0.94182 1.02499 1.02769 1.20492 0.93879 0.93019 0.83598 1.22106 1.02631 0.93045 1.02048 1.22199 1.01954 1.00821 0.96669 1.48455 1.51269 1.12225 1.22687 1.21966 1.02824 0.82696 0.93381 1.21871 1.00816 0.90949 0.98216 0.85455 1.22950 0.75426 0.88567 0.81920 1.90639 1.51774 1.51474 1.46553 1.86737 1.71846 1.38644 1.28662 1.21790 0.96668 0.79248 0.95841 1.18650 0.96841 1.16132 0.92372 1.20536 0.94837 0.98310 0.95645 1.21300 1.00299 1.06009 0.91402 1.17699 0.89898 0.87675 0.93180 1.19720 1.16035 1.17529 0.95029 0.90094 1.25986 0.95329 0.93443 0.99718 1.69823 1.23402 1.09115 1.38401 0.86233 0.79457 0.80015 0.80922 1.18272 1.19563 1.19845 1.20966 0.97131 1.12327 0.94578 1.20387 0.96211 0.97941 0.93601 1.22347 1.00521 0.94649 1.00779 1.20735 0.77398 0.87617 0.83189 1.90739 1.53861 1.17582 1.77787 0.91995 0.91180 0.92085 0.91185 0.92382 0.91203 0.92024 0.91232 0.92048 0.89487 0.88960 0.91937 0.91919 0.89320 0.86221 0.90610 0.88704 0.89300 0.87172 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.49 37.16 0.32 -0.73 16 2 C 0.17 1.45 1.20 -131.82 -0.16 1.29 16 3 C -0.14 -1.33 7.00 37.16 0.26 -1.07 16 4 C -0.16 -1.14 8.54 37.15 0.32 -0.82 16 5 N -0.61 -6.00 2.76 -157.57 -0.43 -6.43 16 6 C 0.11 1.03 5.96 -3.12 -0.02 1.01 16 7 C -0.10 -1.01 3.66 -90.14 -0.33 -1.34 16 8 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 9 C 0.47 6.53 7.19 36.00 0.26 6.79 16 10 O -0.51 -8.07 15.25 -18.75 -0.29 -8.36 16 11 O -0.34 -5.74 10.20 -39.25 -0.40 -6.14 16 12 C 0.14 2.42 5.58 36.00 0.20 2.62 16 13 C -0.24 -5.04 5.54 -104.33 -0.58 -5.62 16 14 C -0.07 -1.68 9.67 -39.66 -0.38 -2.07 16 15 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 16 C 0.12 3.04 5.58 -106.82 -0.60 2.44 16 17 C -0.45 -11.57 9.05 -37.74 -0.34 -11.92 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.78 -19.50 10.95 55.55 0.61 -18.89 16 21 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 26 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 27 C -0.14 -1.55 6.41 -26.74 -0.17 -1.72 16 28 C 0.52 6.28 7.84 -10.86 -0.09 6.20 16 29 O -0.52 -7.81 13.99 5.56 0.08 -7.73 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 7.21 -51.93 -0.37 -0.01 16 33 H 0.07 0.79 7.06 -51.93 -0.37 0.42 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 36 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.09 0.62 7.12 -51.93 -0.37 0.25 16 40 H 0.09 0.93 6.96 -51.93 -0.36 0.56 16 41 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 42 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 45 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 46 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 47 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 48 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 49 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -29.03 399.97 -9.54 -38.56 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.60 Total: 5.51 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.50 Total: -15.40 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.17 Total: -25.32 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.61 Total: -22.23 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.03 -9.54 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.227 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds