Wall clock time and date at job start Wed Apr 1 2020 04:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47374 * 2 1 4 4 O 1.21292 * 119.99846 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00226 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63107 * 359.96993 * 5 3 2 7 7 C 1.53191 * 108.77652 * 126.41481 * 6 5 3 8 8 C 1.53045 * 109.30984 * 54.63725 * 7 6 5 9 9 C 1.53036 * 109.53906 * 298.63571 * 8 7 6 10 10 H 1.09004 * 109.52519 * 301.39694 * 9 8 7 11 11 C 1.50700 * 109.49887 * 181.31772 * 9 8 7 12 12 O 1.20826 * 119.99922 * 0.16302 * 11 9 8 13 13 O 1.34234 * 120.00009 * 180.15918 * 11 9 8 14 14 C 1.45199 * 116.99966 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.46998 * 180.02562 * 14 13 11 16 16 C 1.38627 * 119.75246 * 90.00033 * 15 14 13 17 17 C 1.37616 * 120.25120 * 179.97438 * 16 15 14 18 18 C 1.40718 * 119.74473 * 0.02562 * 17 16 15 19 19 C 1.41393 * 120.24653 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00091 * 25.14524 * 19 18 17 21 21 C 1.39946 * 119.99909 * 205.14205 * 19 18 17 22 22 N 1.30818 * 120.00039 * 17.43021 * 21 19 18 23 23 Si 1.86804 * 119.99709 * 197.43015 * 21 19 18 24 24 H 1.48494 * 109.47232 * 265.18165 * 23 21 19 25 25 H 1.48500 * 109.47151 * 25.18659 * 23 21 19 26 26 H 1.48500 * 109.46807 * 145.18298 * 23 21 19 27 27 C 1.40717 * 119.50817 * 0.27753 * 18 17 16 28 28 C 1.37624 * 119.74544 * 359.39861 * 27 18 17 29 29 C 1.46923 * 120.63106 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.46618 * 60.00514 * 1 2 3 31 31 H 1.09000 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47142 * 300.00257 * 1 2 3 33 33 H 1.08997 * 109.47411 * 239.99339 * 2 1 3 34 34 H 1.09007 * 109.46619 * 119.99396 * 2 1 3 35 35 H 1.08997 * 109.59042 * 246.20721 * 6 5 3 36 36 H 1.09009 * 109.58646 * 6.62807 * 6 5 3 37 37 H 1.08998 * 109.49930 * 174.59075 * 7 6 5 38 38 H 1.09003 * 109.49864 * 294.65575 * 7 6 5 39 39 H 1.09000 * 109.45763 * 178.61760 * 8 7 6 40 40 H 1.08998 * 109.45986 * 58.65222 * 8 7 6 41 41 H 1.08995 * 109.46983 * 60.00110 * 14 13 11 42 42 H 1.09006 * 109.47070 * 300.00075 * 14 13 11 43 43 H 1.08003 * 119.87752 * 0.02562 * 16 15 14 44 44 H 1.08005 * 120.13043 * 180.02562 * 17 16 15 45 45 H 0.97004 * 119.99723 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.12574 * 179.72371 * 27 18 17 47 47 H 1.08001 * 119.87651 * 180.32506 * 28 27 18 48 48 H 1.09001 * 109.58839 * 113.79466 * 29 5 3 49 49 H 1.09004 * 109.58624 * 353.37048 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3245 0.5609 -0.0004 7 6 5.2969 0.7559 -1.1680 8 6 5.9312 2.1453 -1.0716 9 6 4.8401 3.2140 -1.1681 10 1 4.3037 3.1029 -2.1105 11 6 5.4690 4.5821 -1.1056 12 8 6.6674 4.6917 -0.9982 13 8 4.6977 5.6788 -1.1694 14 6 5.3715 6.9633 -1.1027 15 6 4.3523 8.0701 -1.1880 16 6 3.7801 8.5693 -0.0281 17 6 2.8488 9.5803 -0.0941 18 6 2.4775 10.1071 -1.3450 19 6 1.5213 11.1455 -1.4251 20 1 1.3715 11.8076 -0.5851 21 6 0.7691 11.3156 -2.5929 22 7 0.6888 10.3449 -3.4663 23 14 -0.1201 12.9286 -2.9045 24 1 -1.5244 12.8184 -2.4347 25 1 0.5642 14.0214 -2.1679 26 1 -0.1068 13.2281 -4.3590 27 6 3.0602 9.5882 -2.5161 28 6 3.9944 8.5817 -2.4258 29 6 3.8625 3.0468 -0.0011 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.8772 0.5587 0.9390 36 1 3.7969 -0.3857 -0.1185 37 1 6.0768 -0.0042 -1.1227 38 1 4.7563 0.6668 -2.1104 39 1 6.6420 2.2773 -1.8874 40 1 6.4508 2.2419 -0.1183 41 1 6.0723 7.0494 -1.9329 42 1 5.9135 7.0408 -0.1601 43 1 4.0669 8.1638 0.9309 44 1 2.4045 9.9680 0.8108 45 1 0.1671 10.4627 -4.2756 46 1 2.7793 9.9820 -3.4817 47 1 4.4468 8.1855 -3.3229 48 1 4.3775 3.2478 0.9383 49 1 3.0300 3.7405 -0.1196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776113520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:11 Heat of formation + Delta-G solvation = -137.180689 kcal Electronic energy + Delta-G solvation = -29686.636970 eV Core-core repulsion = 25576.860317 eV Total energy + Delta-G solvation = -4109.776654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.92660 -40.99210 -39.56464 -38.50409 -37.47338 -35.71855 -34.45521 -33.42741 -32.79819 -32.19390 -31.27068 -29.02887 -27.08128 -26.32598 -25.23063 -24.20223 -23.00815 -22.82129 -21.87608 -21.17145 -19.91570 -19.30593 -18.74321 -18.32145 -17.67805 -17.58032 -17.11515 -16.74454 -16.61868 -15.97905 -15.78190 -15.64162 -15.27263 -15.15115 -14.78733 -14.51114 -14.46489 -14.07803 -13.95570 -13.87064 -13.76588 -13.58348 -13.55516 -13.06875 -12.87961 -12.73314 -12.69551 -12.65843 -12.53345 -12.13462 -12.04151 -12.01691 -11.94154 -11.76463 -11.71433 -11.65252 -11.43460 -11.32585 -11.06966 -10.82035 -9.76251 -9.47681 -9.36497 -8.71134 -6.43057 0.69581 1.03412 1.07059 1.35960 1.40475 1.52169 1.61291 1.78848 2.05225 2.17763 2.69179 3.43886 3.52200 3.64423 3.70028 3.76007 3.98643 4.03987 4.06764 4.09033 4.11525 4.18961 4.27727 4.43010 4.45358 4.48476 4.50479 4.56321 4.64121 4.72459 4.78588 4.87081 4.96186 4.98325 5.06254 5.06885 5.08729 5.11080 5.26309 5.33934 5.34729 5.35872 5.42392 5.50292 5.61386 5.84417 6.01881 6.09914 6.28418 6.37435 6.60631 6.66957 6.85159 6.93509 7.16176 8.25795 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.002398 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.042244 B =11674.898441 C =13363.858897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.499 3.501 4 O -0.594 6.594 5 N -0.611 5.611 6 C 0.097 3.903 7 C -0.127 4.127 8 C -0.101 4.101 9 C -0.087 4.087 10 H 0.111 0.889 11 C 0.463 3.537 12 O -0.530 6.530 13 O -0.364 6.364 14 C 0.140 3.860 15 C -0.232 4.232 16 C -0.066 4.066 17 C -0.246 4.246 18 C 0.087 3.913 19 C -0.493 4.493 20 H 0.080 0.920 21 C 0.033 3.967 22 N -0.820 5.820 23 Si 0.987 3.013 24 H -0.262 1.262 25 H -0.256 1.256 26 H -0.264 1.264 27 C -0.194 4.194 28 C -0.081 4.081 29 C 0.124 3.876 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.291 0.709 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -24.733 3.872 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.290 3.710 4 O -0.474 6.474 5 N -0.344 5.344 6 C -0.024 4.024 7 C -0.165 4.165 8 C -0.138 4.138 9 C -0.107 4.107 10 H 0.128 0.872 11 C 0.306 3.694 12 O -0.420 6.420 13 O -0.281 6.281 14 C 0.068 3.932 15 C -0.233 4.233 16 C -0.084 4.084 17 C -0.265 4.265 18 C 0.085 3.915 19 C -0.522 4.522 20 H 0.099 0.901 21 C -0.183 4.183 22 N -0.445 5.445 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.180 1.180 26 H -0.188 1.188 27 C -0.213 4.213 28 C -0.100 4.100 29 C 0.000 4.000 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.688 -24.263 3.692 25.438 hybrid contribution -0.435 1.474 -0.348 1.576 sum 6.254 -22.790 3.344 23.867 Atomic orbital electron populations 1.21576 0.94085 1.02714 1.01512 1.21745 0.97625 0.90715 1.06994 1.21828 0.81369 0.93430 0.74344 1.90751 1.56250 1.48735 1.51664 1.48273 1.06254 1.06758 1.73125 1.22225 0.90737 0.89471 0.99958 1.21960 0.99638 0.95833 0.99024 1.21475 0.95369 0.93010 1.03968 1.21508 0.98943 0.87921 1.02356 0.87150 1.24082 0.85771 0.87848 0.71671 1.90607 1.16880 1.88100 1.46447 1.86727 1.42947 1.16024 1.82412 1.21592 0.92449 0.77187 1.01936 1.19013 1.07964 1.02730 0.93582 1.20709 0.95123 0.95575 0.97027 1.21187 1.05441 1.02922 0.96961 1.18053 0.90519 0.91074 0.91884 1.19934 1.18003 1.13313 1.00929 0.90141 1.26873 0.96182 1.00951 0.94264 1.69884 1.32302 1.32775 1.09535 0.85130 0.78423 0.77095 0.78703 1.18664 1.17993 1.18837 1.21276 0.99715 1.01649 0.98664 1.20785 0.96663 0.96361 0.96177 1.21216 0.96783 0.85123 0.96839 0.94175 0.89081 0.93990 0.85763 0.85680 0.89469 0.85842 0.86714 0.90906 0.90775 0.90702 0.91142 0.90673 0.86524 0.87942 0.89865 0.87705 0.87558 0.90434 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.20 71.98 0.66 -1.46 16 2 C -0.13 -1.47 4.77 29.85 0.14 -1.33 16 3 C 0.50 11.13 7.70 87.66 0.67 11.80 16 4 O -0.59 -20.71 15.40 -3.07 -0.05 -20.76 16 5 N -0.61 -11.12 2.97 -818.97 -2.43 -13.56 16 6 C 0.10 0.74 6.34 86.36 0.55 1.29 16 7 C -0.13 -1.00 6.08 30.67 0.19 -0.81 16 8 C -0.10 -1.58 4.46 30.62 0.14 -1.44 16 9 C -0.09 -2.01 2.78 -11.48 -0.03 -2.04 16 10 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 11 C 0.46 14.46 7.26 71.24 0.52 14.97 16 12 O -0.53 -17.94 15.73 21.97 0.35 -17.59 16 13 O -0.36 -13.72 10.13 -51.46 -0.52 -14.24 16 14 C 0.14 5.35 5.58 71.24 0.40 5.75 16 15 C -0.23 -10.51 5.54 -19.68 -0.11 -10.62 16 16 C -0.07 -3.06 9.67 22.22 0.21 -2.84 16 17 C -0.25 -12.58 9.80 22.73 0.22 -12.36 16 18 C 0.09 4.88 5.57 -21.29 -0.12 4.76 16 19 C -0.49 -27.15 9.05 23.46 0.21 -26.94 16 20 H 0.08 4.24 7.90 -2.91 -0.02 4.21 16 21 C 0.03 1.69 5.15 85.26 0.44 2.13 16 22 N -0.82 -43.88 10.96 21.83 0.24 -43.64 16 23 Si 0.99 38.55 29.59 68.60 2.03 40.58 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 27 C -0.19 -10.59 8.69 22.73 0.20 -10.39 16 28 C -0.08 -3.97 9.67 22.22 0.21 -3.76 16 29 C 0.12 3.03 5.64 86.35 0.49 3.52 16 30 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.12 0.66 7.69 -2.39 -0.02 0.64 16 34 H 0.13 0.63 7.94 -2.38 -0.02 0.61 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 0.15 5.93 -2.38 -0.01 0.14 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 41 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 42 H 0.08 2.64 8.07 -2.38 -0.02 2.62 16 43 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 45 H 0.29 13.97 8.30 -92.71 -0.77 13.21 16 46 H 0.11 5.93 6.17 -2.91 -0.02 5.91 16 47 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 48 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 2.32 7.01 -2.38 -0.02 2.30 16 Total: -1.00 -75.14 401.56 5.54 -69.59 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.94 Total: 29.38 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 4.99 Total: -29.77 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -2.20 Total: -57.19 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.22 Total: -52.59 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -75.14 5.54 -69.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.589 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds