Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.70387 * 2 1 4 4 C 1.53630 * 109.66589 * 120.59395 * 2 1 3 5 5 C 1.53035 * 109.24594 * 174.55093 * 4 2 1 6 6 C 1.53049 * 109.53521 * 298.51171 * 5 4 2 7 7 C 1.53190 * 109.31450 * 61.36108 * 6 5 4 8 8 N 1.46923 * 108.77602 * 305.36714 * 7 6 5 9 9 C 1.34776 * 120.63234 * 233.58422 * 8 7 6 10 10 O 1.21282 * 120.00239 * 185.84423 * 9 8 7 11 11 C 1.50704 * 119.99775 * 5.83918 * 9 8 7 12 12 O 1.45200 * 109.47061 * 179.97438 * 11 9 8 13 13 C 1.34230 * 117.00166 * 180.02562 * 12 11 9 14 14 O 1.20829 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00193 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47291 * 180.02562 * 15 13 12 17 17 C 1.37638 * 120.12532 * 265.00511 * 16 15 13 18 18 C 1.38616 * 120.24759 * 179.97438 * 17 16 15 19 19 C 1.38661 * 120.50202 * 0.02562 * 18 17 16 20 20 C 1.37601 * 120.24565 * 0.02790 * 19 18 17 21 21 C 1.40693 * 120.12869 * 84.72143 * 16 15 13 22 22 C 1.41399 * 120.24325 * 0.02562 * 21 16 15 23 23 H 1.08004 * 119.99404 * 325.10872 * 22 21 16 24 24 C 1.39940 * 120.00108 * 145.11692 * 22 21 16 25 25 N 1.30828 * 120.00338 * 4.60641 * 24 22 21 26 26 Si 1.86810 * 119.99868 * 184.60702 * 24 22 21 27 27 H 1.48493 * 109.46995 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.46880 * 120.00126 * 26 24 22 29 29 H 1.48501 * 109.46953 * 239.99798 * 26 24 22 30 30 H 1.08999 * 109.47266 * 174.50837 * 1 2 3 31 31 H 1.09000 * 109.47153 * 294.50553 * 1 2 3 32 32 H 1.09001 * 109.47548 * 54.50755 * 1 2 3 33 33 H 1.09001 * 109.63176 * 54.55083 * 4 2 1 34 34 H 1.09009 * 109.42536 * 294.41729 * 4 2 1 35 35 H 1.08994 * 109.46362 * 178.48972 * 5 4 2 36 36 H 1.09010 * 109.44990 * 58.51815 * 5 4 2 37 37 H 1.09001 * 109.49129 * 301.41246 * 6 5 4 38 38 H 1.09003 * 109.52296 * 181.33437 * 6 5 4 39 39 H 1.08995 * 109.58392 * 185.57798 * 7 6 5 40 40 H 1.09004 * 109.58469 * 65.15544 * 7 6 5 41 41 H 1.09004 * 109.46799 * 60.00138 * 11 9 8 42 42 H 1.09001 * 109.47379 * 300.00028 * 11 9 8 43 43 H 1.09006 * 109.47006 * 60.00380 * 15 13 12 44 44 H 1.08998 * 109.47540 * 300.00011 * 15 13 12 45 45 H 1.08001 * 119.88042 * 359.97438 * 17 16 15 46 46 H 1.08001 * 119.75284 * 180.02562 * 18 17 16 47 47 H 1.07991 * 119.87831 * 180.02562 * 19 18 17 48 48 H 1.07997 * 120.12388 * 179.97438 * 20 19 18 49 49 H 0.96996 * 119.99850 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0469 -0.7363 1.2453 5 6 3.5711 -0.8498 1.1677 6 6 3.9615 -1.6628 -0.0689 7 6 3.4656 -0.9421 -1.3264 8 7 2.0225 -0.6996 -1.1944 9 6 1.1673 -1.1062 -2.1535 10 8 -0.0063 -0.8082 -2.0856 11 6 1.6696 -1.9311 -3.3105 12 8 0.5644 -2.2408 -4.1999 13 6 0.8451 -2.9754 -5.2877 14 8 1.9767 -3.3477 -5.4898 15 6 -0.2511 -3.3357 -6.2569 16 6 0.3231 -4.1581 -7.3817 17 6 0.7093 -3.5501 -8.5546 18 6 1.2383 -4.3040 -9.5906 19 6 1.3841 -5.6766 -9.4590 20 6 1.0037 -6.3057 -8.2958 21 6 0.4720 -5.5494 -7.2347 22 6 0.0837 -6.1841 -6.0323 23 1 0.2104 -5.6755 -5.0880 24 6 -0.4645 -7.4712 -6.0659 25 7 -0.5349 -8.1229 -7.1981 26 14 -1.0959 -8.2587 -4.4940 27 1 -0.9026 -7.3215 -3.3585 28 1 -2.5409 -8.5676 -4.6410 29 1 -0.3456 -9.5134 -4.2330 30 1 -0.3634 -1.0229 -0.0983 31 1 -0.3633 0.4263 0.9351 32 1 -0.3634 0.5966 -0.8367 33 1 1.6095 -1.7337 1.2890 34 1 1.7688 -0.1771 2.1387 35 1 3.9442 -1.3480 2.0625 36 1 4.0063 0.1473 1.0989 37 1 3.5060 -2.6515 -0.0127 38 1 5.0460 -1.7636 -0.1110 39 1 3.6532 -1.5638 -2.2017 40 1 3.9877 0.0089 -1.4323 41 1 2.1037 -2.8576 -2.9346 42 1 2.4283 -1.3691 -3.8551 43 1 -0.6927 -2.4248 -6.6611 44 1 -1.0178 -3.9129 -5.7401 45 1 0.5999 -2.4817 -8.6682 46 1 1.5391 -3.8186 -10.5073 47 1 1.7978 -6.2541 -10.2724 48 1 1.1178 -7.3749 -8.1956 49 1 -0.9152 -9.0149 -7.2213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777158795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = -111.860130 kcal Electronic energy + Delta-G solvation = -30387.590922 eV Core-core repulsion = 26278.912250 eV Total energy + Delta-G solvation = -4108.678672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92915 -41.20922 -39.45110 -38.46283 -37.30346 -35.47296 -34.29758 -33.70056 -33.58024 -31.35496 -30.18262 -28.71067 -28.10380 -26.90875 -25.55283 -23.54704 -22.81483 -22.63150 -21.91891 -21.13586 -20.16074 -19.08688 -18.78097 -18.05913 -17.84801 -17.32981 -17.14216 -16.77057 -16.28093 -16.15885 -15.53891 -15.45869 -15.34526 -15.20330 -14.88221 -14.69487 -14.41894 -14.34240 -13.83234 -13.74514 -13.64796 -13.40633 -13.30012 -13.21628 -12.88678 -12.81506 -12.77078 -12.70050 -12.50903 -12.09287 -12.08346 -11.95684 -11.86739 -11.62911 -11.53268 -11.49706 -11.40263 -11.35130 -11.02169 -10.22972 -9.67335 -9.23990 -9.12710 -8.50318 -6.39313 0.83862 1.07982 1.26590 1.35043 1.35897 1.40097 1.47217 1.50943 2.20114 2.21211 2.80643 3.26941 3.66878 3.74888 3.82453 3.90292 3.92976 3.98139 4.04300 4.05138 4.26112 4.29550 4.33480 4.35702 4.47923 4.56085 4.64043 4.69789 4.72104 4.76151 4.79524 4.91633 4.98168 5.02503 5.05737 5.15761 5.19405 5.22015 5.27315 5.34213 5.38881 5.43700 5.52647 5.63467 5.76229 5.99852 6.15249 6.19330 6.20118 6.39795 6.71173 6.82109 6.98231 7.00807 7.06902 8.41833 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.002811 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.303681 B = 9959.033966 C =11016.736615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.142 3.858 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.136 4.136 7 C 0.094 3.906 8 N -0.603 5.603 9 C 0.518 3.482 10 O -0.546 6.546 11 C 0.040 3.960 12 O -0.349 6.349 13 C 0.470 3.530 14 O -0.523 6.523 15 C -0.043 4.043 16 C -0.189 4.189 17 C -0.092 4.092 18 C -0.227 4.227 19 C -0.118 4.118 20 C -0.179 4.179 21 C 0.091 3.909 22 C -0.487 4.487 23 H 0.064 0.936 24 C 0.033 3.967 25 N -0.838 5.838 26 Si 0.974 3.026 27 H -0.265 1.265 28 H -0.263 1.263 29 H -0.266 1.266 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 14.763 15.944 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.167 4.167 5 C -0.154 4.154 6 C -0.174 4.174 7 C -0.027 4.027 8 N -0.338 5.338 9 C 0.305 3.695 10 O -0.424 6.424 11 C -0.036 4.036 12 O -0.266 6.266 13 C 0.314 3.686 14 O -0.411 6.411 15 C -0.080 4.080 16 C -0.190 4.190 17 C -0.110 4.110 18 C -0.246 4.246 19 C -0.136 4.136 20 C -0.199 4.199 21 C 0.089 3.911 22 C -0.518 4.518 23 H 0.082 0.918 24 C -0.179 4.179 25 N -0.466 5.466 26 Si 0.796 3.204 27 H -0.189 1.189 28 H -0.188 1.188 29 H -0.191 1.191 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.062 14.598 15.857 22.681 hybrid contribution -0.162 -0.992 0.291 1.047 sum 6.900 13.605 16.148 22.215 Atomic orbital electron populations 1.22081 0.94001 1.01878 1.01290 1.21583 0.94757 0.96083 0.83562 0.88936 1.22088 0.96947 1.00586 0.97035 1.21527 0.94520 1.01318 0.98035 1.21951 1.02497 0.98822 0.94173 1.22130 0.78329 1.02369 0.99876 1.48180 1.08072 1.57662 1.19899 1.20120 0.86124 0.79966 0.83307 1.90781 1.18274 1.56589 1.76707 1.22916 0.89054 1.01175 0.90503 1.86577 1.39865 1.66061 1.34052 1.24413 0.90710 0.73522 0.79925 1.90623 1.24501 1.51215 1.74724 1.20017 0.94562 1.01256 0.92155 1.19553 1.10113 0.93944 0.95400 1.20787 0.98193 0.98751 0.93273 1.20830 1.09924 0.93828 1.00018 1.21071 1.00184 0.95226 0.97158 1.21593 1.02984 1.00109 0.95212 1.17769 0.88399 0.91310 0.93599 1.19576 1.38200 1.00258 0.93732 0.91823 1.26607 0.94273 0.96675 1.00350 1.69836 1.36260 1.12561 1.27932 0.85266 0.78782 0.78400 0.77959 1.18898 1.18781 1.19071 0.94366 0.91499 0.92451 0.93048 0.88861 0.90514 0.90162 0.92784 0.88404 0.89562 0.88444 0.88144 0.86805 0.85708 0.87648 0.86019 0.86087 0.87239 0.87323 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.62 71.98 0.55 -2.40 16 2 C 0.14 2.38 3.51 45.12 0.16 2.53 16 3 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.13 -1.62 5.40 30.82 0.17 -1.45 16 5 C -0.12 -1.07 5.88 30.62 0.18 -0.89 16 6 C -0.14 -1.49 6.08 30.67 0.19 -1.30 16 7 C 0.09 1.24 6.35 86.36 0.55 1.79 16 8 N -0.60 -11.86 2.97 -794.23 -2.36 -14.21 16 9 C 0.52 14.34 7.58 87.66 0.66 15.00 16 10 O -0.55 -18.91 12.07 15.76 0.19 -18.72 16 11 C 0.04 1.16 4.30 71.24 0.31 1.47 16 12 O -0.35 -12.81 9.75 -45.06 -0.44 -13.25 16 13 C 0.47 19.15 7.55 71.23 0.54 19.69 16 14 O -0.52 -23.92 15.78 21.96 0.35 -23.57 16 15 C -0.04 -1.73 5.32 29.10 0.15 -1.57 16 16 C -0.19 -8.98 4.43 -19.41 -0.09 -9.06 16 17 C -0.09 -3.99 9.66 22.22 0.21 -3.78 16 18 C -0.23 -9.85 10.05 22.46 0.23 -9.63 16 19 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 20 C -0.18 -9.73 8.68 22.73 0.20 -9.53 16 21 C 0.09 4.96 5.56 -21.29 -0.12 4.84 16 22 C -0.49 -26.53 7.92 23.46 0.19 -26.35 16 23 H 0.06 3.45 6.98 -2.91 -0.02 3.43 16 24 C 0.03 1.72 5.42 85.25 0.46 2.18 16 25 N -0.84 -44.68 10.59 21.83 0.23 -44.45 16 26 Si 0.97 39.99 29.56 68.60 2.03 42.02 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 29 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 30 H 0.04 1.04 6.95 -2.39 -0.02 1.02 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.52 6.55 -2.39 -0.02 1.51 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.17 5.93 -2.39 -0.01 1.16 16 40 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.10 2.79 7.92 -2.39 -0.02 2.77 16 42 H 0.11 2.78 7.70 -2.39 -0.02 2.76 16 43 H 0.13 4.10 8.05 -2.38 -0.02 4.08 16 44 H 0.11 4.38 7.22 -2.39 -0.02 4.36 16 45 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 46 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 47 H 0.11 4.58 8.06 -2.92 -0.02 4.55 16 48 H 0.11 6.22 6.12 -2.91 -0.02 6.20 16 49 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -70.32 392.53 5.70 -64.61 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.95 Total: 31.42 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.76 Total: -23.84 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -2.12 Total: -58.66 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: 0.10 Total: -55.54 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -70.32 5.70 -64.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777158795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.247 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds