Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47466 * 2 1 4 4 C 1.34982 * 119.99821 * 95.00583 * 3 2 1 5 5 C 1.46254 * 120.00348 * 180.02562 * 4 3 2 6 6 O 1.21718 * 119.99832 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00589 * 179.97438 * 5 4 3 8 8 C 1.47433 * 125.64428 * 359.95646 * 7 5 4 9 9 C 1.55393 * 104.87396 * 204.16622 * 8 7 5 10 10 C 1.55158 * 101.36604 * 323.02138 * 9 8 7 11 11 O 1.42905 * 110.71665 * 277.04214 * 10 9 8 12 12 C 1.50698 * 110.72071 * 153.94900 * 10 9 8 13 13 H 1.08000 * 120.00108 * 2.43313 * 12 10 9 14 14 C 1.37875 * 119.99880 * 182.43864 * 12 10 9 15 15 N 1.31516 * 120.00122 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47033 * 59.99945 * 16 14 12 18 18 H 1.48501 * 109.47466 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47176 * 300.00326 * 16 14 12 20 20 C 1.47023 * 125.65372 * 179.97438 * 7 5 4 21 21 C 1.47001 * 120.00474 * 275.00063 * 3 2 1 22 22 C 1.39972 * 120.10632 * 64.72507 * 21 3 2 23 23 C 1.37666 * 119.88035 * 179.67495 * 22 21 3 24 24 C 1.39020 * 120.11366 * 0.62106 * 23 22 21 25 25 O 1.35736 * 119.88729 * 179.69240 * 24 23 22 26 26 C 1.42895 * 117.00083 * 359.97438 * 25 24 23 27 27 C 1.39019 * 120.22864 * 359.67734 * 24 23 22 28 28 C 1.37664 * 120.11550 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 299.99898 * 1 2 3 31 31 H 1.09001 * 109.47522 * 59.99445 * 1 2 3 32 32 H 1.09000 * 109.47083 * 240.00102 * 2 1 3 33 33 H 1.09001 * 109.47522 * 120.00555 * 2 1 3 34 34 H 1.08000 * 119.99754 * 359.97438 * 4 3 2 35 35 H 1.08994 * 110.36621 * 323.00423 * 8 7 5 36 36 H 1.09005 * 110.36538 * 85.21633 * 8 7 5 37 37 H 1.09003 * 111.18887 * 204.98028 * 9 8 7 38 38 H 1.08998 * 111.02037 * 80.98017 * 9 8 7 39 39 H 0.96696 * 114.00036 * 177.55969 * 11 10 9 40 40 H 0.97000 * 119.99972 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.87979 * 59.49193 * 20 7 5 42 42 H 1.09001 * 109.87860 * 298.32082 * 20 7 5 43 43 H 1.07995 * 120.06320 * 359.97438 * 22 21 3 44 44 H 1.08004 * 119.94561 * 180.31828 * 23 22 21 45 45 H 1.08999 * 109.47555 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47242 * 299.99630 * 26 25 24 47 47 H 1.09002 * 109.47368 * 59.99896 * 26 25 24 48 48 H 1.08000 * 119.94509 * 180.02562 * 27 24 23 49 49 H 1.07997 * 120.06481 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3535 2.0230 1.1645 5 6 2.8406 3.4021 1.1647 6 8 2.9568 4.0066 0.1147 7 7 3.1607 4.0036 2.3274 8 6 3.0676 3.3916 3.6655 9 6 2.9276 4.5909 4.6438 10 6 3.8609 5.6376 3.9798 11 8 5.2214 5.4116 4.3546 12 6 3.4356 7.0371 4.3422 13 1 2.6061 7.1919 5.0164 14 6 4.1052 8.1199 3.8130 15 7 5.1154 7.9314 2.9924 16 14 3.5775 9.8547 4.2616 17 1 3.6941 10.0435 5.7300 18 1 4.4507 10.8335 3.5654 19 1 2.1676 10.0665 3.8458 20 6 3.6604 5.3788 2.4717 21 6 2.1728 2.1508 -1.2682 22 6 1.0410 2.4486 -2.0360 23 6 1.1772 3.1383 -3.2195 24 6 2.4374 3.5277 -3.6589 25 8 2.5670 4.2021 -4.8297 26 6 1.3677 4.4763 -5.5566 27 6 3.5653 3.2290 -2.9031 28 6 3.4392 2.5459 -1.7145 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2500 1.4868 2.0963 35 1 2.1906 2.7474 3.7278 36 1 3.9713 2.8235 3.8866 37 1 3.2811 4.3291 5.6411 38 1 1.8991 4.9501 4.6772 39 1 5.8500 6.0160 3.9368 40 1 5.5863 8.6933 2.6198 41 1 2.9316 6.0821 2.0689 42 1 4.6102 5.4849 1.9477 43 1 0.0621 2.1420 -1.6982 44 1 0.3040 3.3731 -3.8103 45 1 1.6122 5.0190 -6.4697 46 1 0.8751 3.5381 -5.8121 47 1 0.7007 5.0813 -4.9424 48 1 4.5420 3.5340 -3.2485 49 1 4.3160 2.3139 -1.1282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015052.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = -75.976689 kcal Electronic energy + Delta-G solvation = -30775.749468 eV Core-core repulsion = 26668.626818 eV Total energy + Delta-G solvation = -4107.122649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.14088 -39.35324 -37.99321 -36.78320 -35.19792 -34.21965 -32.18120 -31.10610 -30.80418 -30.17216 -29.00036 -27.80047 -27.22514 -25.49882 -24.06341 -22.58942 -22.36695 -22.21652 -19.95970 -19.38326 -18.32152 -17.89267 -17.22134 -16.74651 -16.07847 -15.70267 -15.53836 -15.17162 -14.84035 -14.75199 -14.33041 -14.12205 -13.93406 -13.61565 -13.57392 -13.21867 -13.01269 -12.96903 -12.81983 -12.68960 -12.39847 -12.15530 -11.97391 -11.80725 -11.65644 -11.46536 -11.28075 -11.06631 -10.97068 -10.93386 -10.74460 -10.63775 -10.62114 -10.50415 -10.15679 -9.38397 -9.31308 -9.06490 -8.66177 -8.62366 -8.29958 -7.76583 -7.62402 -6.27204 -4.35818 1.18640 1.64737 1.85325 3.23243 3.28951 3.30689 3.33522 3.75365 3.82670 3.98260 4.28269 4.65438 4.77903 4.84131 5.00091 5.00983 5.02353 5.06823 5.15382 5.17456 5.28069 5.35969 5.42155 5.48531 5.53815 5.65997 5.72174 5.74311 5.75870 5.81614 5.88001 6.00154 6.06061 6.10192 6.22125 6.22933 6.47385 6.47731 6.52495 6.63353 6.76924 6.81461 6.89165 6.93821 7.06485 7.29925 7.41769 7.51919 7.74618 8.02691 8.31974 8.66476 8.87305 9.31932 9.41512 10.80550 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.003286 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.189630 B = 8519.809309 C =10357.160650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.008 4.008 4 C -0.195 4.195 5 C 0.542 3.458 6 O -0.537 6.537 7 N -0.607 5.607 8 C 0.101 3.899 9 C -0.118 4.118 10 C 0.248 3.752 11 O -0.586 6.586 12 C -0.539 4.539 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.903 3.097 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.106 3.894 21 C -0.076 4.076 22 C -0.070 4.070 23 C -0.217 4.217 24 C 0.127 3.873 25 O -0.320 6.320 26 C 0.029 3.971 27 C -0.153 4.153 28 C -0.006 4.006 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.384 0.616 40 H 0.271 0.729 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.126 0.874 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 -14.896 -10.008 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.010 4.010 4 C -0.216 4.216 5 C 0.333 3.667 6 O -0.417 6.417 7 N -0.339 5.339 8 C -0.022 4.022 9 C -0.156 4.156 10 C 0.207 3.793 11 O -0.395 6.395 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.015 4.015 21 C -0.076 4.076 22 C -0.088 4.088 23 C -0.236 4.236 24 C 0.083 3.917 25 O -0.234 6.234 26 C -0.066 4.066 27 C -0.172 4.172 28 C -0.025 4.025 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.144 0.856 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.072 -14.881 -10.465 19.902 hybrid contribution -0.282 1.611 0.013 1.635 sum -8.354 -13.270 -10.452 18.845 Atomic orbital electron populations 1.21800 0.94401 1.01887 1.02545 1.20654 0.96442 0.92181 1.03210 1.20963 0.93426 0.94627 0.91952 1.22989 1.05004 0.95592 0.97972 1.17968 0.79000 0.86826 0.82944 1.90868 1.54771 1.66312 1.29757 1.48732 1.63485 1.16227 1.05473 1.22395 1.00107 0.96592 0.83095 1.22832 1.00151 0.94643 0.97947 1.19488 0.80414 0.92216 0.87149 1.86084 1.18309 1.61836 1.73305 1.21482 1.17008 0.90158 1.29087 0.91650 1.25062 0.94465 0.99903 0.93764 1.69633 1.20881 1.32115 1.30713 0.86470 0.78690 0.83073 0.78724 1.19979 1.21055 1.20058 1.22946 0.98809 0.79009 1.00779 1.18502 0.93550 1.01456 0.94129 1.20842 0.97442 0.97195 0.93290 1.20925 0.95857 1.06759 1.00017 1.19094 0.94016 0.92806 0.85825 1.86010 1.33576 1.71429 1.32347 1.22996 0.86945 1.00629 0.96031 1.20185 0.97083 1.04003 0.95889 1.20754 0.96350 0.92693 0.92653 0.92175 0.92262 0.92251 0.90504 0.90535 0.85537 0.92107 0.91795 0.90551 0.90597 0.76519 0.91920 0.91755 0.91804 0.86241 0.86021 0.88583 0.92919 0.92732 0.85640 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.84 37.15 0.37 -0.87 16 2 C -0.09 -0.82 6.08 -27.89 -0.17 -0.99 16 3 C -0.01 -0.10 4.75 -102.23 -0.49 -0.59 16 4 C -0.19 -2.90 9.11 -37.52 -0.34 -3.24 16 5 C 0.54 10.70 7.65 -13.04 -0.10 10.60 16 6 O -0.54 -12.11 12.52 5.17 0.06 -12.05 16 7 N -0.61 -12.54 3.33 -171.90 -0.57 -13.11 16 8 C 0.10 1.78 6.52 -2.26 -0.01 1.76 16 9 C -0.12 -2.34 6.26 -24.32 -0.15 -2.49 16 10 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 11 O -0.59 -14.82 13.07 -35.23 -0.46 -15.28 16 12 C -0.54 -14.20 8.11 -34.44 -0.28 -14.48 16 13 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 14 C 0.07 1.88 5.27 -17.82 -0.09 1.78 16 15 N -0.89 -24.08 10.96 55.43 0.61 -23.48 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.11 2.60 5.38 -3.06 -0.02 2.58 16 21 C -0.08 -1.15 3.85 -105.05 -0.40 -1.55 16 22 C -0.07 -0.97 9.50 -39.14 -0.37 -1.34 16 23 C -0.22 -2.99 9.01 -39.50 -0.36 -3.35 16 24 C 0.13 1.94 6.70 -39.00 -0.26 1.68 16 25 O -0.32 -4.50 10.48 -18.92 -0.20 -4.70 16 26 C 0.03 0.28 9.81 101.05 0.99 1.27 16 27 C -0.15 -2.45 9.97 -39.50 -0.39 -2.84 16 28 C -0.01 -0.10 6.94 -39.14 -0.27 -0.37 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 6.00 -51.93 -0.31 0.19 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 34 H 0.13 1.56 6.83 -52.49 -0.36 1.20 16 35 H 0.06 0.86 7.14 -51.93 -0.37 0.49 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.38 10.01 7.23 45.56 0.33 10.33 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.06 1.73 7.81 -51.93 -0.41 1.33 16 42 H 0.06 1.71 8.00 -51.93 -0.42 1.30 16 43 H 0.12 1.40 6.19 -52.49 -0.32 1.08 16 44 H 0.12 1.35 6.27 -52.48 -0.33 1.02 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 47 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 48 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 49 H 0.12 1.91 8.05 -52.49 -0.42 1.49 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -31.04 394.69 -8.80 -39.84 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.74 Total: 13.67 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.43 Total: -6.49 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.04 Total: -36.58 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.59 Total: -32.03 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.04 -8.80 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015052.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.133 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds